G2265453 (LOC106611878)


Basic Information

Item Value
gene id G2265453
gene name LOC106611878
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 25311128 ~ 25314079 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2591292
AGCTTTTATTATCAAATCGCAATTTTTTCATCACACGACGGCATCAACAATGAAGCATGAGAAATGATTATCAATGTTGTCATCACTGTTAGAAACATCAGTATCCTAATTTCTCAACATCCTCTTCGCAATGTGTTCTATTCTTATTTTGATATGCAGCATAATTATTTAGTTAGAGTACATATGGGGAGATCACCATACTTGGTTACGTCTCCAAAAAAGCCACAGTATAATATTTTCAGCCACTCAGTCTGTTGATTACCTCTGGCTGAGGGGATTCTCGACTGGAAATCATGTGattcaaacaggaaatgcattAGCAACTTTATAAACTGCGAAACCAAAGATGTGGAAACAAATATGTTGATGGTGTGAAAAGATATTGCCATGTACTGTAtttttgaagaagaaaaaattCAACATTAACATGTGATTGCAAAAgctcaaaaataaataatatttgttaaaaaataaaatatactcTTATTTGTTGTTTGTCTATGAGGACTAGCACCATGGCATCCACATatttactgtatgtacatacattTGTGATCATATCTAAGATAGTACATTATACCTTTATACAACACACAGTACCTACAAATCATATATATAGATGGATCCATTTAGGGAGATGGACTACATGCTTTAAAGAACTGACTTAAGGCATTGGAAATGAGTAAGTAGCCTATCATAGCTGATGAATTCCTGTTATGCAATTATTACAAGCCCCTCAGTAATTCTTTAAACAGTTTTGAATGTTAGAGAATAATTCAAGAATGATGTATTCACACAGCAAAAACAGTACAtattttgtgaCATATCACACATCTGAAAGCAAGAAATGATCGCAACACAACCAAGTGTAAAAACAGTTTGGAAAGAAAGAACTGTGGGCAAGAAAAACAGAAGTAATGTCTCCACTTCCTGGAAACAGACACTATGTACTGACACACATCAACATGCAACACACAGCTGTAACTGTAAGTAAGACAACATGATTCAACATGTCTGTCATCTGTGTCAACTCTGGGCCTCTCAGAGGTTGATtcccaataatctctcctttCCCCTGAAGCGTGCACTTGTTCACTACTCTCCACATATATGtcaaagcattggattggtgtaggATTGGTTTCGGCATCCTTTTCAAATCCATGACTACAAGTGAACACTTCAAGAGAACGGAATGATTTGAGCGAAGCACCAGTGATTCAACTCAGACTCCCAGTGATTCAACTCTCAGCCGCCTTCTATTCTACCACATTCTATCTAGACAGTACCTTGCTCACTGTCCTTTCCGTACACTGGCGTACATACAATACTCCTCCTCAGGCATGTCTACCTTCCTCCTGGGACCCTCTAATATTGTAATCTGTCCATACTCCACCTCCACCGGCTGCTGGGGACCACACGCTTCGTTCACTTGCCCATATTCCACCTCCACCGGCgcctccctctccttctgtctcattTCCTGCCTCAGTATCCTGACATCAGCGTATTCCACATCCTGGCTGTCACCCTTA

Function

NR:

description
uncharacterized protein LOC110504833 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2591292 True 1535 lncRNA 0.39 2 25311128 25314079

Neighbor

gene id symbol gene type direction distance location
LOC110504297 LOC106611877 coding upstream 2486 25304278 ~ 25308642 (+)
hmgxb3 hmgxb3 coding upstream 95748 25202079 ~ 25215380 (+)
LOC100136157 LOC100136157 coding upstream 119650 25183222 ~ 25191478 (+)
LOC110504826 LOC106611870 coding upstream 129720 25091632 ~ 25181408 (+)
LOC110504823 LOC106604841 coding upstream 230902 25065488 ~ 25080226 (+)
LOC110504832 LOC106611862 coding downstream 203854 25517933 ~ 25536990 (+)
LOC118946013 NA coding downstream 226897 25540976 ~ 25551549 (+)
LOC110504839 LOC106611885 coding downstream 237498 25551577 ~ 25576248 (+)
si:dkey-74k8.4 aldob coding downstream 265130 25557578 ~ 25586728 (+)
LOC110504411 LOC106611888 coding downstream 274272 25588351 ~ 25607112 (+)
G2265491 NA non-coding upstream 395 25310453 ~ 25310733 (+)
G2265490 NA non-coding upstream 1460 25309430 ~ 25309668 (+)
G2265480 NA non-coding upstream 12037 25298802 ~ 25299091 (+)
G2265476 NA non-coding upstream 18622 25292297 ~ 25292506 (+)
G2265434 NA non-coding upstream 105895 25204924 ~ 25205233 (+)
G2265452 LOC106611878 non-coding downstream 6785 25320864 ~ 25321611 (+)
G2265460 NA non-coding downstream 40447 25354526 ~ 25401997 (+)
G2265513 NA non-coding downstream 48853 25362932 ~ 25368820 (+)
G2265454 NA non-coding downstream 106255 25420334 ~ 25421319 (+)
G2265425 LOC106611874 other upstream 66799 25215651 ~ 25244329 (+)
G2264345 NA other upstream 1120093 24190750 ~ 24191035 (+)
G2264344 NA other upstream 1120776 24190073 ~ 24190352 (+)
G2264210 LOC106582338 other upstream 1430096 23880781 ~ 23881032 (+)
G2264113 LOC100136700 other upstream 1447155 23855609 ~ 23863973 (+)
G2265625 NA other downstream 311066 25625145 ~ 25626856 (+)
LOC110504852 LOC106611898 other downstream 509961 25820435 ~ 25838497 (+)
G2265744 NA other downstream 664056 25978135 ~ 25978638 (+)
LOC118946064 NA other downstream 975646 26289725 ~ 26292004 (+)

Expression


Co-expression Network