G2266848 (LOC106611822)


Basic Information

Item Value
gene id G2266848
gene name LOC106611822
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 26988469 ~ 26989173 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2593043
TAATTCACATCTTGTAAATACTTGGAGGAATCGTCTGGGGCTTTGGAGCACTGCATTACAATCAACACGATGATACTGATTATAAAAAGTGCTGAAACTGACATCAAAGTtatgatcaaataaaatgtaacgCTGTTCTCCTCCTCGTCTTTTACTGCGCTTTTAACATCAGAAGCTGCAAAAGCCTCTTTGGGCTCCACAACGTTGATAAGCACAGTAGCTGTTGCTGAGAGTGAAACGTTCCCATTGTCTTTTACCAGTATGACCAGTTTATGCTCAGCCTCGTCTGTCTCTGTGAATGACCGAAGTGTCCTTATCTGTCCTGTATAACGGTCCAAAGCAAAGAGACTGTGGTCAGTAACTTCCTGCAGTGAAAATAATAACCAGCCGTTATATCCTATATCAGCGTCATAGGCTCTCACTTTAGTCACCAAATGGCCTGCGTTCACATTGCGGGGAATCTCCTCCACACCTTCAGTGGAACCATTAGCGCTGACTGGATACAAGATCACTGGAGCGTTGTCGTTCTGATCCAGAATGAACACATTCACTGTGACGTTGCTGCTTAGTGACGGAGTTCCAGAGTCCTTGGCAATGATGTGAAACTGGAATGTTTTGAGGGTTTCAAAGTCAAAGCTCTTTAGTGCATAAATGTTACCGTTGCCTTCATTTATGTTTAGGAAGGATGTCACGCTTTGTCCAGTG

Function

NR:

description
protocadherin alpha-8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2593043 True 705 lncRNA 0.43 1 26988469 26989173
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110504416 diaph1 coding upstream 504477 26298775 ~ 26483992 (+)
LOC118946064 NA coding upstream 696799 26289725 ~ 26292004 (+)
LOC110504418 LOC106604872 coding upstream 712064 26213009 ~ 26276405 (+)
LOC110504415 dock2 coding upstream 870741 25980922 ~ 26117728 (+)
LOC110504854 LOC106611908 coding upstream 1057865 25880623 ~ 25930604 (+)
LOC110504898 LOC106611819 coding downstream 136447 27125620 ~ 27174120 (+)
LOC110504902 k0141 coding downstream 710516 27699689 ~ 27711246 (+)
LOC110504904 LOC106611814 coding downstream 722579 27711752 ~ 27774452 (+)
trnap-ugg-72 NA coding downstream 903228 27892401 ~ 27892472 (+)
LOC110504908 NA coding downstream 904313 27893486 ~ 27896473 (+)
G2266845 LOC106611823 non-coding upstream 9489 26974312 ~ 26978980 (+)
G2266813 NA non-coding upstream 69673 26915156 ~ 26918796 (+)
G2266789 LOC106611688 non-coding upstream 108834 26873871 ~ 26879635 (+)
G2266786 LOC106611845 non-coding upstream 112162 26863343 ~ 26876307 (+)
G2266784 LOC106611685 non-coding upstream 115707 26858211 ~ 26872762 (+)
G2266850 NA non-coding downstream 3267 26992440 ~ 26992741 (+)
G2267173 NA non-coding downstream 14264 27003437 ~ 27003676 (+)
G2267236 NA non-coding downstream 89875 27079048 ~ 27079268 (+)
G2267249 NA non-coding downstream 99161 27088334 ~ 27088549 (+)
G2267264 LOC107579696 non-coding downstream 120378 27109551 ~ 27109990 (+)
G2266826 NA other upstream 52580 26934720 ~ 26935889 (+)
G2266668 LOC106611853 other upstream 367521 26588592 ~ 26620948 (+)
G2265744 NA other upstream 1009831 25978135 ~ 25978638 (+)
G2268340 NA other downstream 1777704 28766877 ~ 28767729 (+)
G2268400 LOC106611722 other downstream 1907582 28896755 ~ 28898079 (+)
G2271027 NA other downstream 4187717 31176890 ~ 31181107 (+)
G2272912 LOC106611792 other downstream 5874263 32863436 ~ 32866226 (+)
LOC110505056 LOC105028844 other downstream 6426917 33328263 ~ 33421963 (+)

Expression

G2266848(LOC106611822) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.2.
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G2266848(LOC106611822) Expression in each Bioproject

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G2266848(LOC106611822) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 14.
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Co-expression Network