XLOC_004154 (plch2b)


Basic Information

Item Value
gene id XLOC_004154
gene name plch2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 25752198 ~ 25777318 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007935
TATTCCTCAAGTCCATGCACCGACAATTAAAATCCCCCAGTACGAGTAATGCCTTCACCTCATCCTGGATTAGAGATTTACTGACCGCTGACACGTGTGGCTCCTCGGTTCTTCCCGTCCCAGATTCCCCGAAAACCTGCAGCCACAACGACAACTAAAAACCCTGAAGAATATCTGAAGAAAACGCGATATCAATGGACCAGAGAGAGGGTCGGCCGCTAAGAGGATCAGTCCAGAAGAGGTGCCAGCTGGAATTAAAGCATTCGTGTACACTGAGAAGTGTCGGCTCATCATTTCAGTAACACCTGTCCCGCTGGACGGACGAGAGCTGACCTTATGAGTGACCACCGGATGGAGGAACATGCCCACAGGTCCAGGTTATGACCACACAAGTGTCCCGCAGTAATGAACTCATCTCCAGCTATGGCACCGTCTTCTCCGGTCTTGTTTTCACCGTCGCTCGCCCGGAGGCCCCCAAGTCCCGGCCGGAGACCCAACACAAATTTCAGATCGGCCTCTCCGTCCATCATGACTTCACCCAAACTGTGGCAGAAAGCCGCGATTTCGCGTTTGGCGGAGGAGTTTTTCTGGATAGGGGGAAGCATCGTCGCCTCACCAAAGTGGAGAATGGGCCAGATTGTGGAGAGATGCATGTGCAACATGCAGGCCGGCTCTCAAATGATCAAACTGAGAGGAAAATCCAAGGCTCTGGTGCGTCTCTTTTATCTAGATGAGCACAAGTCCTGTATCCGCTGGAGGCCTTCAAGGAAACATGAGAGAGCAAAAATCACCATAGACTCTATCCATGAGGTCTGTGAAGGAATGAGAACCGAGGTCTTTAGGCGATTTGCCAACAATAACTTTGATCCAAACTGCTGCTTCAGTATTTACCACGGAGACCACGTGGAGTCTCTTGACTTGGTTTCCACCAATGGAGAAGAGGCACGGACCTGGATCACTGGCCTTAAATACCTCCTGGCAGGCATCAGTGACGAGGACAGTCTGGCAAAAAGGCAACGCACACGAGATCAATATCCTTTTAATTGAGGGAGAAGGGCTGTCTGTCATAGAGGCAGACTAAATCCACACACAGCCCCCTCATGTGGCCTGGTTTAGTTTTGTGCAAATTGTTCTGTATTGTGGTGCGGAGGTTTCCTTACAGACTGTTGCAAATGGTTGAGACAGACCTTTTCAGAGGCAGACAAAAATGGAGATGGAAATCTGAGCATTGGAGAAGTCCTGCAGCTGCTTCACAAGCTCAACGTGAACCTCCCAAAGCAGAAAGTCAGAGAAATGTTCCAGGAGGCTGACACTGATGAAAACCAGGGGTCATTGACATTTGAGGAATTCTGCACCTTTTACAAACTGATCTCAACACGACGAGATCTTTATTTACTGATGATCAGCTACAGCAACCACAAAGAGCACCTGGACCTGAACGACCTGCAGCGCTTCTTAGAAAGCGAGCAAAAGatGGTAAATGTGACCAAAGAATACTGCAAAATGATCATTAACCAGTTTGAGCCATGTTCTCAAAACCAAAGTCATGTGGTGCTGGGTATTGATGGTTTCACCAACTACATGCGCAGTCCTGCAGGAGACATTTTTAACCCAGAACACTACCAAGTAAATCAGGACATGACCCAGCCGCTTACAAATTACTACATCGCGTCTTCGCACAACACTTACCTGACTGGAGATCAGCTGCTGTCTCAGTCTCGGGTTGACATGTATGCATATGTGCTTCAGATGGGCTGTCGCTGTGTGGAAGTTGACTGCTGGGATGGTCCTGATGGTGAACCTATTGTGCATCATGGATACACGCTTACCTCAAAAATCCTCTTTAAGGATGTTGTTGAGACAATCAACAAATACGCATTTGCCAAAACTCAATTCCCAGTGATACTCTCTATAGAGAACCACTGCACTGTGCCTCAGCAGAAGAAAATGGCTCAATACCTCATGGAAGTGCTACAGGACAAAGTGGACCTGTCAAACATAAACACAAACGAGTCCAGACGTCTGCCATCTCCAGAGGATTTGAAAGGCAAAATACTTGTCAAGGGCAAGAAACTGCCAGCAAACATTGACGCTGATGCTGATGAAGGGGACGTGTCTGATGAAGACAGCGGAGAAGAGGATGAGGAGGAAGAGCTGCAACTTAATGGAGATACCACAGAAGGAGCGCCAGAGTCTGCATCGGCAGATGAATCAAAGAAACGCTCACGGAGGAAGTTCATGGGCAGCTTCAGGCGCAAGaagaaaaaacaggTCAAGGTAAAAAAGAAACCCATCGTGAGTGACTCTGATACTGAACCAGAGATCACAAGCACTAACGATAAACAGGTCATCAACTATGGCAAACGAAGAAAAACCATGCGACTTTCTCGTGCCCTCTCTGATCTGGTCAAATACACCAAGTCAGTGCGTGTTCATGATATCGAAACGCAAGCATATATGTCCAGCTGGCAAGTGTCCTCCTTAAACGAAAGCATAACCAATCAGATTCTCCAGCTGAAGCCTGCGCAGTTAGTTCGATTCAATCAACGGCAACTTTTACGAGTTTATCCCTCCAACTACCGTGTGGATTCAAGTAACTTCAATCCTCAGCCTTTCTGGAACGCAGGATGCCATTTAGTCGCTCTCAACTATCAAACAGAAGGCCGTATGCTGCAGCTGAACAGGGCCAAATTTGCGGCGAATGGAAACTGCGGCTATGTGCTGAAGCCAAAATGCATGTGTAAAGGTGCCTTTAATCCAGTGCTGGAAGACCCTTTGCCTGGACACAGGAAATCTCAGCTAGTGCTCAAGATTATTAGTGGCCAGCAGCTGCCCAAGCCAAAAGACTCTATGTTAGGGGACAGAGGAGAGATCATAGATCCCTTTGTTGAAGTGGAGATTATTGGATTGCCCATTGATTGCAATAAACAACAGACAAGAGTAGTGGATGACAATGGTTTTAACCCCACGTGGGAGGAGACTCTAGTGTTTACGCTGCACATGCCTCAGATTGCCTTAGTACGCTTTATGGTTTGGGACCACGATCCAATTGGACGAGACTTTATTGGACAGCGAACTATATCGTTTAAAAGCATGATGCCAGGTTATCGACATGTCTATTTAGAAGGCATGGAAGAAGCGTCAATATTTGTTCATGTTGCTGTTAATGACATCACAGGAAAGGTCAAATCAAGCAATGCAGTGAAGCAGCTAATCCAGAAAAACCTTATGCAGACCTCTGAAGATGGCACACGAAAGTCTTTCGCTCCAAACTTCCTCCGGAAAAGTGGGAAGAACCAATCGAAAGTGGTGAAGGTCGAATGCTACACCAAAGAGGACTTTCTCAACAGACGTTACAGTGATGATGTGAGCTCGAAGGACAGCAGGAGCACCTCCCAGTCTGCATCTTTACTCAGAGGAGCTCAAAGCGAACCCCTCAAAAGAGCCCATAGGGTCAGTTTTCAGGAGCCAGAAGGATCTCATGAGCCGCGGCGCCGCCTCTCCTCCATCCCATACACTGGTGGAGCAGCGGTGGACTACACCAACTTAGCATTCGACTCACACAGCAGCTCCGAACTGGACATTCAGACTTTTTCACACCTTGAGGACAACACAgagtcaaaacaaaatgattctCTTTCATCTAAACTAGAGTTTGAGTCTACAGACATACCGAAGAGCCCCGCTTCAACACTCAATGAACAGTGCTTGTCCAGGCAGATCTCAGCAGCTAATGAACATTCAGAACAAAAACCTGAGATGTCCAAAATGATCCATTCAGTACCTGACCCCTTGAATTTCCACCCAATACCTGATGGAGTACTAGATCCTTCTAGGGGAACATTAAACACGTTGGTGCCCCAGAATAAATTCAGATCTTCTCTAGATGCTAGGCTTAACCCTCGGTGGCAGCCGTTGTCAATCCCAGCGACCCCAGCACTAAACAGACGCATGAATGATAAAGGCACGCCAAATTCCCTATTGAAAGGATGCAGATCACAAAGCGTGCCAAGACGGCGTCCCACCTCTCCTCCAAATACCCCTGGTCACATAAGGAGAGACCCCATCAACCAGTATTTTCTCCCACAGTGCAGTTACACCACAGCAAACGACCTCGTTCCTAATAATCACAACATCGCAGAGAGTGAATCAAGCAGCCTAAGTAGTTTGGACAGCCTTGACCTGAGTACTCTGCCATGCCGTTTCCCTGACAACCAGCAGCAGACAATGGGCACACTGCAGAGGGAAATGAATGCCCTGTTTGAGCAGAAAATACAGGAGATTCGCTGCCATTCGCCACTGTTTTTCAGAGattCTTCAACATTGTAGAAAAAAATGCACTTGAAAGCATACAGAATAAAGATGAATTCTACACCACAGCTACTGCGACGGATGTGGACATATGCAACTGGAAGAAATGCAATTgtgtaaaagaaatataaatatttgtattttgtacaaaTGTCGTCTTGTTTAAAACTTAGGGTTTtaatgtttacatatttaaagggccatgaaacgcGTCAGGATAGTGGGTGAGTTATcattgttta
>TCONS_00007936
AGgtggggtagggTGGAGAGATGCATGTGCAACATGCAGGCCGGCTCTCAAATGATCAAACTGAGAGGAAAATCCAAGGCTCTGGTGCGTCTCTTTTATCTAGATGAGCACAAGTCCTGTATCCGCTGGAGGCCTTCAAGGAAACATGAGAGAGCAAAAATCACCATAGACTCTATCCATGAGGTCTGTGAAGGAATGAGAACCGAGGTCTTTAGGCGATTTGCCAACAATAACTTTGATCCAAACTGCTGCTTCAGTATTTACCACGGAGACCACGTGGAGTCTCTTGACTTGGTTTCCACCAATGGAGAAGAGGCACGGACCTGGATCACTGGCCTTAAATACCTCCTGGCAGGCATCAGTGACGAGGACAGTCTGGCAAAAAGGCAACACTGTTGCAAATGGTTGAGACAGACCTTTTCAGAGGCAGACAAAAATGGAGATGGAAATCTGAGCATTGGAGAAGTCCTGCAGCTGCTTCACAAGCTCAACGTGAACCTCCCAAAGCAGAAAGTCAGAGAAATGTTCCAGGAGGCTGACACTGATGAAAACCAGGGGTCATTGACATTTGAGGAATTCTGCACCTTTTACAAACTGATCTCAACACGACGAGATCTTTATTTACTGATGATCAGCTACAGCAACCACAAAGAGCACCTGGACCTGAACGACCTGCAGCGCTTCTTAGAAAGCGAGCAAAAGatGGTAAATGTGACCAAAGAATACTGCAAAATGATCATTAACCAGTTTGAGCCATGTTCTCAAAACCAAAGTCATGTGGTGCTGGGTATTGATGGTTTCACCAACTACATGCGCAGTCCTGCAGGAGACATTTTTAACCCAGAACACTACCAAGTAAATCAGGACATGACCCAGCCGCTTACAAATTACTACATCGCGTCTTCGCACAACACTTACCTGACTGGAGATCAGCTGCTGTCTCAGTCTCGGGTTGACATGTATGCATATGTGCTTCAGATGGGCTGTCGCTGTGTGGAAGTTGACTGCTGGGATGGTCCTGATGGTGAACCTATTGTGCATCATGGATACACGCTTACCTCAAAAATCCTCTTTAAGGATGTTGTTGAGACAATCAACAAATACGCATTTGCCAAAACTCAATTCCCAGTGATACTCTCTATAGAGAACCACTGCACTGTGCCTCAGCAGAAGAAAATGGCTCAATACCTCATGGAAGTGCTACAGGACAAAGTGGACCTGTCAAACATAAACACAAACGAGTCCAGACGTCTGCCATCTCCAGAGGATTTGAAAGGCAAAATACTTGTCAAGGGCAAGAAACTGCCAGCAAACATTGACGCTGATGCTGATGAAGGGGACGTGTCTGATGAAGACAGCGGAGAAGAGGATGAGGAGGAAGAggggctaataattttgaccttgaatggtttaaaaaaattaaacactgcttttattctagccaaaataaaaaaaagactctccagaagaaaagatattataggaaatactgtgaaaaattccttACGAAGAAAAACCATGCGACTTTCTCGTGCCCTCTCTGATCTGGTCAAATACACCAAGTCAGTGCGTGTTCATGATATCGAAACCTGGCAAGTGTCCTCCTTAAACGAAAGCATAACCAATCAGATTCTCCAGCTGAAGCCTGCGCAGTTAGTTCGATTCAATCAACGGCAACTTTTACGAGTTTATCCCTCCAACTACCGTGTGGATTCAAGTAACTTCAATCCTCAGCCTTTCTGGAACGCAGGATGCCATTTAGTCGCTCTCAACTATCAAACAGAAGGCCGTATGCTGCAGCTGAACAGGGCCAAATTTGCGGCGAATGGAAACTGCGGCTATGTGCTGAAGCCAAAATGCATGTGTAAAGGTGCCTTTAATCCAGTGCTGGAAGACCCTTTGCCTGGACACAGGAAATCTCAGCTAGTGCTCAAGATTATTAGTGGCCAGCAGCTGCCCAAGCCAAAAGACTCTATGTTAGGGGACAGAGGAGAGATCATAGATCCCTTTGTTGAAGTGGAGATTATTGGATTGCCCATTGATTGCAATAAACAACAGACAAGAGTAGTGGATGACAATGGTTTTAACCCCACGTGGGAGGAGACTCTAGTGTTTACGCTGCACATGCCTCAGATTGCCTTAGTACGCTTTATGGTTTGGGACCACGATCCAATTGGACGAGACTTTATTGGACAGCGAACTATATCGTTTAAAAGCATGATGCCAGGTTATCGACATGTCTATTTAGAAGGCATGGAAGAAGCGTCAATATTTGTTCATGTTGCTGTTAATGACATCACAGGAAAGGTAACACTCTGTTATACTAGAGAGGAGGGATGA

Function

symbol description
plch2b Predicted to enable calcium ion binding activity and phosphatidylinositol phospholipase C activity. Predicted to act upstream of or within intracellular signal transduction and lipid catabolic process. Orthologous to human PLCH2 (phospholipase C eta 2).

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0007165 signal transduction biological_process
GO:0016042 lipid catabolic process biological_process
GO:0005509 calcium ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004629 phospholipase C activity molecular_function
GO:0008081 phosphoric diester hydrolase activity molecular_function
GO:0004435 phosphatidylinositol phospholipase C activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-101112-1 Predicted to enable calcium ion binding activity and phosphatidylinositol phospholipase C activity. Predicted to act upstream of or within intracellular signal transduction and lipid catabolic process. Orthologous to human PLCH2 (phospholipase C eta 2).

Ensembl:

ensembl_id ENSDARG00000056805

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007935 False 4553 mRNA 0.47 20 25752198 25777318
TCONS_00007936 True 2340 mRNA 0.45 18 25755436 25775447

Neighbor

gene id symbol gene type direction distance location
XLOC_004153 brpf3a coding downstream 17781 25712772 ~ 25734417 (-)
XLOC_004152 CR933820.1 coding downstream 82243 25669839 ~ 25669955 (-)
XLOC_004151 si:dkey-245f22.3 coding downstream 212875 25528557 ~ 25539323 (-)
XLOC_004150 NA coding downstream 275218 25475305 ~ 25476980 (-)
XLOC_004149 hcfc1a coding downstream 290862 25436440 ~ 25461336 (-)
XLOC_004155 skib coding upstream 5403 25782721 ~ 25829712 (-)
XLOC_004156 tmem51b coding upstream 55901 25833219 ~ 25853212 (-)
XLOC_004157 kaznb coding upstream 80623 25857941 ~ 26180714 (-)
XLOC_004158 prdm2b coding upstream 412385 26189703 ~ 26217510 (-)
XLOC_004159 foxj3 coding upstream 451600 26228918 ~ 26362334 (-)
XLOC_004063 CR854846.1 misc downstream 9624520 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 13060507 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 13130431 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 13160902 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 13238936 12512966 ~ 12513262 (-)
XLOC_004147 NA non-coding downstream 343302 25368112 ~ 25408896 (-)
XLOC_004144 dre-mir-499 non-coding downstream 546955 25205153 ~ 25205243 (-)
XLOC_004142 CR628365.2 non-coding downstream 784311 24967771 ~ 24967887 (-)
XLOC_004165 CR847934.1 non-coding upstream 970974 26748292 ~ 26748429 (-)
XLOC_004167 NA non-coding upstream 1724887 27502205 ~ 27507973 (-)
XLOC_004169 NA non-coding upstream 1766260 27543578 ~ 27625465 (-)
XLOC_004173 BX601648.1 non-coding upstream 2006440 27783758 ~ 27806767 (-)
XLOC_004174 NA non-coding upstream 2023541 27800859 ~ 27809715 (-)

Expression


Co-expression Network