G2268502


Basic Information

Item Value
gene id G2268502
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 29049148 ~ 29091292 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2595050
CATTTCTTCATAAATAGTTggtaaaacaaacaaaccaacaaaCGATAGCCTACTTTAAATTGTACAATGAACCTTTGTCTCTTCCCGCTAAATAAGGAATAGGCTCGCTGTTGTATCATCGTTTGCCTCGATTGTGGCACAGTGACACAGTTCATCagtaaaacatttgcttttcAGGAATAACTTGGAGTGTGACCCATTTCTCCCAGAAAGTGTTACAACATCACATTCTAGCTGCGTTTCTAAGTCAGAAATGTGCTCCGACTTCAGGGCATGGGGCATAAGGGTTGTGGAaataagaaaaaagtatttattttaaattaatGTATAGAAAAtagtatataaaacatatatTCCTTAAATTATTTAAATAAACGTATTTTATATATCACTGTCACTTACGAGGTactgtttttacattttgttttaaAAGTAGTGCTGGTGGTCTGAAATCGTTCTCATATGCACAATATATTTTGTGGTATGCATAAGATTAAATTCTTGAAAATAGGTTACAATGCAATGCTGTAACTCTTTGTGCCACTGAACATATTTTCCTCACCCCACATAGCCTATAACTATTAGTGTTCCTTAGACTTAATTCACACAAAAAGGTTTTCTCGACAGGTTATTCACACAAAACAAGCAAACGTATAATCAAACTGCTCTATATGCAACACCACAGTACTTATAACAAATAACACGCTTAGTTTCACAGAATAATTACATTTAAAACAATGCAAGCTGACAGACAAaaaaacttttattttgaagataCTGTGTTGTGACAGTTTCATTGTTGCCGATGCACACATTTAAACATACTTGCACAAAGACATTGTTGGAACTATAAAGGAATGCCATACTGGCTCATATGTTTGGGTATTTGACCCGAATTTGAAATACTCCAAATATTGTCACCTTGGTGTGGAATTCGTGAATGAACTAGTGAACTACTATCTGTCAATGGCTGATGGATCTTTCGAATCAGAAATCATGCTACATATGAACTCTACTCTCTGATTCTATAAAAGTCAAATACACAAAAAAAGATAATTTGACCAAAAAGATACGACAGAACCGTTTTATATAGTTTGCCAACTCAATTGATTACAATTCAGATTTACAGAATTGATGATTTACATGTCAATGGTCTCACAAGTTAAACAATAAGTGATGGAAAAATCAGCATCATATAGACAAATCCATAACATTTATATAGACGATATCTTAGATCCAAATAAGACACATGTATTGGTTAAAAAAAGATACAATCGCAATATTGGAGCTTTATAGTTGATCATAGTTGTTTAATGCTAGCTGGTTATGACCCAAAACTGTACAGTCTTGTTAGAAAACATTTTCATAAATATCATTTTAAGTTTTAGAACTTATATCCATAATTAAATTACAAATTGATAAATATGGCATCATGAATATGTATTTACAACGTTATTAACAAAGGCAACGTTATATTTAACGGTAACAATCGTAACCTAATACCACATTTCTCCACCTGAAAACAGACATTGACAATTCGACCCCATCAAACAAGGAAATACATTCAcgagtatatatttatttattatttattttttgttcaaGTTCAAGACAAAGACTTTGGCACGTTTCTTAAGACTGTCTGAATTTTTAACAATCAATTGAAAGGCGACAGTAGTGTGTCACCATTATATAAAACACCGTGAAATATTCTTCCTTCtccattatttttttaaataaaaatttgAGAAAATACATacaatgaaaaataaaataattatctGTAAAATAAGAAATCTGTAAACTAAAAAAGggggaaaaacatgtttttttattctTAGAAAGTATTATTTCATTATTTATGATTTATTTGTTCTCTTCGAACTCGGAATAAAAGTCACATTTCGAATCCTGAGAAAGGACGAGGCCTGCTGCTGCTGGCTTGCTCTCATCTCCTCGTGTTGTTCCAATCCCATTTTGTGTACACCTTGGTGTGAGTACTTTTTAAGGTTTCCTTAAAACCTCTTTGTCCACATTGAGAGCTTGCTTCTGACTTCAAACGTACCATTCATTAAAGTTGGGTGGCAGTCCTGCATCGCTGTGCCCAGATGTGTTTTGAACGGCTGACGGTGGTGTTTTTGTTGGGTCTTCAGTGTTCGCTGACACCAGAACTGGTGGTGTGGACGACTCATATCCAGAACTTGCTGCTGGAGAGGACTCAGAACATTGAGACTCGTGTACctccactcctgc

Function

NR:

description
zinc finger protein ZIC 3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2595050 True 2253 lncRNA 0.34 2 29049148 29091292

Neighbor

gene id symbol gene type direction distance location
LOC110504943 LOC106611723 coding upstream 101459 28928741 ~ 28947689 (+)
cd40l cd40l coding upstream 160186 28885566 ~ 28888962 (+)
LOC110504942 vgll1 coding upstream 210470 28835262 ~ 28838678 (+)
LOC110504941 LOC106611721 coding upstream 214979 28819095 ~ 28834169 (+)
LOC110504939 LOC106611720 coding upstream 300886 28728016 ~ 28748262 (+)
LOC118946044 NA coding downstream 16752 29108044 ~ 29112791 (+)
f9a LOC106611733 coding downstream 405528 29496820 ~ 29501604 (+)
LOC110504958 LOC106611797 coding downstream 726288 29817580 ~ 29825990 (+)
LOC110504961 LOC106604734 coding downstream 739630 29830922 ~ 29838708 (+)
LOC110504959 LOC106611740 coding downstream 747570 29838862 ~ 29847848 (+)
G2268435 NA non-coding upstream 87188 28961570 ~ 28961960 (+)
G2268426 NA non-coding upstream 104590 28944064 ~ 28944558 (+)
G2268419 LOC106611724 non-coding upstream 124587 28923646 ~ 28924561 (+)
G2268392 NA non-coding upstream 173988 28874878 ~ 28875160 (+)
G2268384 NA non-coding upstream 182735 28866152 ~ 28866413 (+)
G2268532 NA non-coding downstream 10969 29102261 ~ 29106107 (+)
G2268538 NA non-coding downstream 30527 29121819 ~ 29122187 (+)
G2268598 NA non-coding downstream 130096 29221388 ~ 29223547 (+)
G2268599 NA non-coding downstream 133153 29224445 ~ 29233975 (+)
G2268600 NA non-coding downstream 133528 29224820 ~ 29226187 (+)
G2268400 LOC106611722 other upstream 151069 28896755 ~ 28898079 (+)
G2268340 NA other upstream 281419 28766877 ~ 28767729 (+)
G2266826 NA other upstream 2113259 26934720 ~ 26935889 (+)
G2266668 LOC106611853 other upstream 2428200 26588592 ~ 26620948 (+)
LOC110504416 diaph1 other upstream 2676665 26298775 ~ 26483992 (+)
G2271027 NA other downstream 2085598 31176890 ~ 31181107 (+)
G2272912 LOC106611792 other downstream 3772144 32863436 ~ 32866226 (+)
LOC110505056 LOC105028844 other downstream 4324798 33328263 ~ 33421963 (+)
LOC110505080 LOC106611630 other downstream 5110791 34202011 ~ 34207415 (+)
G2274048 NA other downstream 5140703 34231995 ~ 34232604 (+)

Expression


Co-expression Network