G2270307


Basic Information

Item Value
gene id G2270307
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 30201336 ~ 30202893 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2597009
ctctctagcgctctctctctagcgctccctctctagtgccccttctctagtgctccctctctagtgctccctctctagtgctccctctctagtgctccctgtctagtgctccctctctagtgctctctctctagcgctccctctctagcgctccctctctggtgctctctctctatagcgctctctctctagctctctctctctctagcgctccctctctagcgctccctctctagcgctctctctatAGCGCTCCCTCTTTAGTGCTccctctctagtgctccctctctagtgccccctctctagtgctccctctctagtgccccctctctagtgctccctctgTACTGCTccctctgtagctctctctctctctagtgctctctctctagtgctctctctctagtgctctttctctagtgctctctctctagtgctctctctctagcgctccctctctagcgctccctctctagcgctctctctatagctctcactctctctatagctctcactctctctagcgccctctctctctatggCTCTCTCTATAGCTCTCTCCGTTGCTCTCACTATAGCTCTCTTTCTATAGCTCTCTCCGTAGCTCtctctatagctctctctctataGCTCTCACTATAGCTCTCACTATAGCTCtctctatagctctctctctataGCTCTTTCTATAGCTCTCTCCGTAGCTCTCTCTATAGCTCTCACTATAGCTCTCCCACTATAGCTCTCACTAAAGCTCTCtctctatagctctctctctataGCTCTTTCTATAGCTCTCTCCGTAGCTCTCACTATAGCTCTCACTATAGTTCTCACTATATCTCTcactatagctctctctctctatagctctctctctatagatctatctctctctctatagctatatttctctctctctatagctctatctctctctctatagctctatttctctctctctatagctctatttctctctctctatagctctatctctctctatagctctatcgctctctctctatagctctattgctctctctctatagctctatcgctctctctctatagctctattgctctctttctctatagctctatctctctctctatagctctatcgctctctctctctatagctctatcgctctctatagctctatcgctctctctatagctctatcgctctctctataGTTCTAtagctctatcgctctctctctctagctctatcgctctctctctatagctctatcgctctctctatagctctatcgctctctctataGTTCTAtagctctatcgctctctctctatagctctatctctctctctatagttctatagctctatcgctctctctctatagttctagctctctctagctctctctctcgttgtagATGTGTGGAAATGCTTGGGATATTATCGTTGTCAGTATTTGACTCACCAATCTAACATTTACTGATCCATTCTAGAATATAATCATTGTAATACAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2597009 True 1502 lncRNA 0.47 2 30201336 30202893

Neighbor

gene id symbol gene type direction distance location
LOC110504964 LOC106611741 coding upstream 132133 29888089 ~ 30069203 (+)
LOC110504963 LOC106611742 coding upstream 313825 29872871 ~ 29887511 (+)
LOC110504959 LOC106611740 coding upstream 353488 29838862 ~ 29847848 (+)
LOC110504961 LOC106604734 coding upstream 362628 29830922 ~ 29838708 (+)
LOC110504958 LOC106611797 coding upstream 375346 29817580 ~ 29825990 (+)
cdx1 cdx1 coding downstream 17037 30219930 ~ 30223418 (+)
LOC110504968 LOC106611745 coding downstream 22063 30224956 ~ 30230188 (+)
LOC110504970 LOC106611748 coding downstream 69384 30272277 ~ 30282447 (+)
LOC110504971 LOC106611749 coding downstream 80806 30283699 ~ 30286467 (+)
LOC110504973 LOC106611750 coding downstream 99695 30302588 ~ 30319039 (+)
G2270258 NA non-coding upstream 92578 30108530 ~ 30108758 (+)
G2270010 NA non-coding upstream 112858 30087949 ~ 30088478 (+)
G2270001 NA non-coding upstream 139259 30061214 ~ 30062077 (+)
G2269958 NA non-coding upstream 242460 29958207 ~ 29958876 (+)
G2269919 NA non-coding upstream 282763 29917813 ~ 29918573 (+)
G2270364 NA non-coding downstream 5493 30208386 ~ 30208626 (+)
G2270374 NA non-coding downstream 9244 30212137 ~ 30212347 (+)
G2270382 NA non-coding downstream 13013 30215906 ~ 30216204 (+)
G2270388 NA non-coding downstream 28880 30231773 ~ 30231984 (+)
G2270407 NA non-coding downstream 60652 30263545 ~ 30263896 (+)
G2268400 LOC106611722 other upstream 1303257 28896755 ~ 28898079 (+)
G2268340 NA other upstream 1433607 28766877 ~ 28767729 (+)
G2266826 NA other upstream 3265447 26934720 ~ 26935889 (+)
G2266668 LOC106611853 other upstream 3580388 26588592 ~ 26620948 (+)
LOC110504416 diaph1 other upstream 3828853 26298775 ~ 26483992 (+)
G2271027 NA other downstream 973997 31176890 ~ 31181107 (+)
G2272912 LOC106611792 other downstream 2660543 32863436 ~ 32866226 (+)
LOC110505056 LOC105028844 other downstream 3213197 33328263 ~ 33421963 (+)
LOC110505080 LOC106611630 other downstream 3999190 34202011 ~ 34207415 (+)
G2274048 NA other downstream 4029102 34231995 ~ 34232604 (+)

Expression


Co-expression Network