G2270572


Basic Information

Item Value
gene id G2270572
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 30575508 ~ 30577126 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2597295
ATGATTCAAATTTACTTACAAAACATTTATACACAGTAATTTCTCTTGACACATTTACAGATATAAAATAGTTTAAATAGTACATGTTCTCATGTGTAAGAATACAAATGGTCATGAAACTGTCAGTACACAATCTATTTCATTTAGTTAAATACTGTTCTGATGACCTCAAGGTTATGTCTGTTAAAagcaatgtttgtaaacataatGTTGTAACTTACTCCACAAAACATTGTACAGAGACACTTATGTAATCTGCAAGGCTTTGCAACATGATGCTGTAACAAGCTTTGCGCCTTTTGGAACCATTTAAAATGGTTAAAGAACTGTAACAAAACAAGCAGGCCAAACAGAAATATAATGTATAATTAAGCAAGAAGGGCTGTGGTATGTGCACGACAGAGGGTCCAGTGCGCACCACTTAGGTATGGTGGGGAGCAGGCCTCGAAACCTCGATcttctagcccgaggtccggTGCACTATCGACTGTGCGGCAGAAGCATGCTCGTGCCGCacagtcgatttccgcgcttactCCGTCCTTTCAAAGAGCGCGTCCTCGCGCTAGCTTGTGACTCTACGTCTTACAGGAACGCGCTCACCGGCCAAGTACAAACAGCAAGGAGCAGGTCTTGAACCctcgaggtccggcgcgctatcgactgtgccgcaaaagcatgctcatgcggcagagtcgatttccgcgcgtataaacccagggtcgttacactataTTGGCAATATAGCAcaaccccccgaggtgccttattgctattataaactggttaccaacgtaattagagcagttgCGTCATACCCATGATATACCATgagtttcagccaatcagcattcagggctccaaccacccagtttataatgtcttACGAATTGAAAGGGATTAGCAAACCGCTATACACATGTACTTGAAAGTAAACAGTTCAACTGACAAAATAACATTGTAAAAGCTCAAAACAGAGAGAATGGAGAAAGTCAAGCACAAACGATATTCATTGTTAATGAAATCATAACCTCTCCTTTCaaagtagttttttttttagaaacaATGAGTCTGAAAATATCCCCACTTTCACTCACAGCTATTTGTAGTTTGTTTTCTAGCCCATTTTTCAATAAGACTGGACTGTCTTGACCTTAAAATCTTAATTTGATACCAATAATAGCGGATATCAATTGTAATTGATAATCTGTGGAGACAATTTCCACATCAAACAGGCATAGAATACAAATGACAGTTTCATACCCTTGAAGTGAGCAACTGAAATGTAGACTGAGGCACATAGTTAGACAGCAAAAAGTTGATGTAAACAACACCACACAAAGTTTCTATAAACAAAACTTGACTGAGGCTGGTGGGCTTTTCAGTTCAAGTTATTACTACATTCAGTTAGACACTCAAGAGTTAGCGATTAAAACCCAGGCCCCTCTTTCAATGACACAATTATACATGGAACCAGTCAGGTGGGTAACATGAACCACAAGCTTAAGACCTTCGAACAGAAATGTAACCTGAAAGCCTTTTAATGCAACTCTAGAAATTATATATGTATTGGAATCCCTTCTCTGCCTTTCACCAGTGTCAGTTTTGGGCTGAATAta

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2597295 True 1619 lncRNA 0.40 1 30575508 30577126

Neighbor

gene id symbol gene type direction distance location
LOC110504986 LOC106611761 coding upstream 51068 30517331 ~ 30524440 (+)
LOC110504985 LOC106611760 coding upstream 59125 30502069 ~ 30516383 (+)
LOC110504984 LOC106604710 coding upstream 75349 30496632 ~ 30500159 (+)
LOC110504982 yif1a coding upstream 79060 30488564 ~ 30496448 (+)
LOC110504981 LOC106611758 coding upstream 95615 30476682 ~ 30479893 (+)
LOC110504990 LOC106611765 coding downstream 22903 30600029 ~ 30611248 (+)
trnaa-agc-11 NA coding downstream 75553 30652167 ~ 30706266 (+)
trnaa-agc-12 NA coding downstream 76845 30653971 ~ 30654043 (+)
trnaa-agc-13 NA coding downstream 77157 30654283 ~ 30654355 (+)
trnaa-agc-14 NA coding downstream 79262 30656388 ~ 30656460 (+)
G2270573 NA non-coding upstream 32491 30542780 ~ 30543017 (+)
G2270557 NA non-coding upstream 42387 30532901 ~ 30533121 (+)
G2270553 NA non-coding upstream 50550 30524668 ~ 30524958 (+)
G2270478 NA non-coding upstream 148101 30382613 ~ 30427407 (+)
LOC110504976 mrpl11 non-coding upstream 192498 30321823 ~ 30383240 (+)
G2270597 NA non-coding downstream 52569 30629695 ~ 30629970 (+)
G2270598 NA non-coding downstream 53868 30630994 ~ 30631366 (+)
G2270600 NA non-coding downstream 57377 30634503 ~ 30634771 (+)
G2270601 NA non-coding downstream 58390 30635516 ~ 30638737 (+)
G2268400 LOC106611722 other upstream 1677429 28896755 ~ 28898079 (+)
G2268340 NA other upstream 1807779 28766877 ~ 28767729 (+)
G2266826 NA other upstream 3639619 26934720 ~ 26935889 (+)
G2266668 LOC106611853 other upstream 3954560 26588592 ~ 26620948 (+)
LOC110504416 diaph1 other upstream 4203025 26298775 ~ 26483992 (+)
G2271027 NA other downstream 599764 31176890 ~ 31181107 (+)
G2272912 LOC106611792 other downstream 2286310 32863436 ~ 32866226 (+)
LOC110505056 LOC105028844 other downstream 2838964 33328263 ~ 33421963 (+)
LOC110505080 LOC106611630 other downstream 3624957 34202011 ~ 34207415 (+)
G2274048 NA other downstream 3654869 34231995 ~ 34232604 (+)

Expression


Co-expression Network