G2270601


Basic Information

Item Value
gene id G2270601
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 30635516 ~ 30638737 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2597324
CACAGTATGGCTTGACACAGTGGCCCTATACAAACACTTCTAAAATGCATCCTTCTTCCTTTTCTTGAGGTGTTTGTTCCAGTTTAGGAATAAACGGTTGAAAAATACACTTCAAGTGGCACTTCAACACAATGGTTGCTGTGGTGAAGAAAAATCAAGGACTTTGTTCATTGCTGTTAATGGGCTTTTCACAGACATTCATGAACCAATGAATCCAGTGATTTTAAGGAGGGAAGGTAGTAATCTTTTACTAATCAAACTCTGGCTCATAGTCATCTACCAGCGGCAAGAGAACAAGTTACTTCACAATATTCTGCCGAAATGCTACTCGTCCTCAAAACCCCCCAGGCAGTCACACCACCAACAACAATGTGCCAAATGTTACCAGGCACGTACACTATGGAGCCATTGAAACCATCTGATCCAGGCCTGTACATAACTTAGAAGATATGGTAAACCACAAACACTGGGAGGAACCACCTGCTGGCATTTCACCCATGACTTCCTGTTTCACAGTGCCAAGCCACCCACCAGAGGTGGCTTAATAAACCTTTAGCAGAGAGACTGGCACACTGTCACAtcactcagtcagtccctcagtcagttagCTTGAACATACCACCCTTTAATTTAAAGTTCACTCACTGGTCAAGATAAATTAATTTCAAGAAAAAAAATCTTGGGAAAAGCCTCAAAAAGCAAAATACGTATGTTGATCATATTGCAAGACATAATTATTACAATAACACCTAGATGAAAAGACAGATTGAGAGACACAAAACAAAACTCTCACTCTTGGAAAATAAACAGTGATGTCAGAGCTCCATTTCTAAATATATTTATCCCAATTCAGTTATTTTCATCCAATTTTGCCAACTGATTAAAGTTTGGTAACAAACAGGTATTCATACCCACCAATCACAGAAGCAGAAAGAGACATCATCTGGCACTTCATTTCAAGGGACCATCTTAAAACAGAACTTAAAGCGTATTGGACATGGGAGTGGGAGCTTAACAATTGGATAAGAGACTTATATTtctatctatagtctatagtctagaTTTCTAGAATATACGTATATATGAATAATATGGCTTTTTATAGCACCCATTACAGATCAAAAACATTGTTTTATCCAGACAAGTCTGTCAAGACAAGCAAGTTATTCCACTGAAAATGTGAATAATTATTCACATTAGCAGCACCATCATAGGCACTCACAAAATTTgcgtaaacaaacaaaaacgacTTCACTGGACCTGTTGAATCTTATCTCTCCCCTCCGGTCATATTTGGTACAACAACTTTGTTCACTGTGAATCATTGACAATGATCATTGCATTTTCCACAATGCAATACAGACCCAGGACTTACCTTTGGTCTGAATGGGGATACACAAAGAGGATCAAACCCAAAAATGTACCCTACACAATCCAGTGTATAACAGGTTCTGGTTTGGTATGATTGTGGTCACACAAGAATCCCAGGATTGTTGTTTTGATTAAGAGTTCCACGAAGGGTTCATGACGACTGTATTATTCAACACTGATGACTATTGGCTAGCTTAGACTTTGATGACTCAGGGTCCACTAGATCATATTTCCACCTTCATTTATACATAAATGATTGTAAGATTGACAGGTTCTCTCAGTTCCTGCTCTTCCTGCCTCAAGTCCGGCGATTGGAGCGTTCGTCGTCAGGGGCGTCAATATGTACTGCACGGCCCAGGCTCTTAGCCTTTGGGACACAGCACAAAAGTTGggcacaaaaataaataaaaaacacttcTAAGacttacagtatcagtcaaaagtttggacacatccactcattcaagggtttttctttcatttgactattttctacattgtagaataagagtgaagacctcacaacgatgaaataacacatacacaatcatgcagtaaccaaaaaagtgttaaactaatcaaaatatattttagatttgagattcttcaaagtagccaccctttgccttgatgtcatctgtgcacactcttggcattctctcaaccagcttccagAGGTATTCctttggaatgcatttcaattaacaggtgtgccttgttaaaagttcatttgtggaatgtctttccttcttaatgtgtttgagacaatcagttgtgttgtgacaaggtaggggtggtatacagaaaatagccctatttggtaaaagaccaagtccatattatggcaagaaaagctcaaaaaagcaaagagaaatgacagtccatcattactttaagacatgaaggtcagtcaatcaggaaaatttcaagaacattgaaagtttcttcaagtgcagtcataaaccatcaagcgctatgatgaaactgtctctcatgaggaccaccacagcaaaggaagacccagagttacctttgctgcagaggataagttaattagagttaccagcctcagaaattgcagcccaaataaatgcttcacagagttcaagtaacagacacatttcaacatcaactgttcagaggagactgcgtgaatcaggacttcatggtcgaattgctgcaaagaaatcactactaaaggacaccagagacttgcttgggccaagaaacacaagctatGGACATTAGACAAGTGGAAATctctcctttggtctgatgagtccaaatttgagatttttggttccaaccgctgtgtctttgtgagacgcagagtatgtgaacggatgatctctgcatgtgtggttctcaccgtgaagcatgggggaggtgtgatggtgtttttCTGGTGAAaccgtctgtgatttatttagaattcaaggcacatttaatcagcatggctaccacagcattcttcaaTGATAAGCCATCCCatgtggtttgcgcttagtgagactatcagttgtttttcaataggacaatgacccaacacacctccaggctatgacaatgacccaacacacctccaggctgtgtaagggctatttgaccaaggagagtgatggagtgctgcatcagatgacctggcctccacaatcacacgacctcaacccaattgagatggattgggatgagttggaccgcagagtgaaggaaaagaagccaacaagtgctcagcatatgtgggaactctttcaagaccgttggaaaagcattccaggtgaagctggttgagagaatgccaagggtgtgcaaagctgtcaccaaggcaaagggtggctactttgaagaatc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2597324 True 3222 lncRNA 0.41 1 30635516 30638737

Neighbor

gene id symbol gene type direction distance location
LOC110504990 LOC106611765 coding upstream 24268 30600029 ~ 30611248 (+)
LOC110504986 LOC106611761 coding upstream 111076 30517331 ~ 30524440 (+)
LOC110504985 LOC106611760 coding upstream 119133 30502069 ~ 30516383 (+)
LOC110504984 LOC106604710 coding upstream 135357 30496632 ~ 30500159 (+)
LOC110504982 yif1a coding upstream 139068 30488564 ~ 30496448 (+)
trnaa-agc-11 NA coding downstream 13942 30652167 ~ 30706266 (+)
trnaa-agc-12 NA coding downstream 15234 30653971 ~ 30654043 (+)
trnaa-agc-13 NA coding downstream 15546 30654283 ~ 30654355 (+)
trnaa-agc-14 NA coding downstream 17651 30656388 ~ 30656460 (+)
trnaa-agc-15 NA coding downstream 19737 30658474 ~ 30658546 (+)
G2270600 NA non-coding upstream 745 30634503 ~ 30634771 (+)
G2270598 NA non-coding upstream 4150 30630994 ~ 30631366 (+)
G2270597 NA non-coding upstream 5546 30629695 ~ 30629970 (+)
G2270572 NA non-coding upstream 58390 30575508 ~ 30577126 (+)
trnaa-agc-199 NA non-coding downstream 310959 30949696 ~ 30950464 (+)
G2270914 NA non-coding downstream 311712 30950449 ~ 30950994 (+)
G2270916 NA non-coding downstream 312764 30951501 ~ 30951752 (+)
G2270921 NA non-coding downstream 327573 30966310 ~ 30966549 (+)
G2268400 LOC106611722 other upstream 1737437 28896755 ~ 28898079 (+)
G2268340 NA other upstream 1867787 28766877 ~ 28767729 (+)
G2266826 NA other upstream 3699627 26934720 ~ 26935889 (+)
G2266668 LOC106611853 other upstream 4014568 26588592 ~ 26620948 (+)
LOC110504416 diaph1 other upstream 4263033 26298775 ~ 26483992 (+)
G2271027 NA other downstream 538153 31176890 ~ 31181107 (+)
G2272912 LOC106611792 other downstream 2224699 32863436 ~ 32866226 (+)
LOC110505056 LOC105028844 other downstream 2777353 33328263 ~ 33421963 (+)
LOC110505080 LOC106611630 other downstream 3563346 34202011 ~ 34207415 (+)
G2274048 NA other downstream 3593258 34231995 ~ 34232604 (+)

Expression


Co-expression Network