G2271158 (LOC106611802)


Basic Information

Item Value
gene id G2271158
gene name LOC106611802
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050571.1
NCBI id CM025858.1
chromosome length 44108611
location 31146374 ~ 31148092 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2597933
AAATATTTCAGTCAGTTTTATTTCTCTCCTAACAATATCTCCTGTGAACATGATTATAGCTCCAGTTTTCCATATTCCAGTTCTTAGTTTTATTTGGTCTCATTCTTCTTTGTCTCGGGGCAAAACTCTGCAGAGAGAAGACAATGAAGGAAAGAAAGATTTAGATTTGGATCACAATGTCAATGTTGCAACGTTATTTCATCTGTAGACATTGTACCTGCAACGCCATCATAGATGAACTGTGCAGGCTGAGGGAACTTGAGGCACTCGGCTTGTTTTCTGATTGGCTCCAGCTCTGATTCATGCAGTTTGCCAGTCTTTCCTggaaaagggaaaataaaatGGCTTTTTAAACACAGCAATCGGGTAAATTCTGACAAAgataaacacccacaaacaccccACTCCCACTTTACCTACACAACCACCTActcaaaagcacacacacacacctaccaaaGATATAGAAAGATCGGACCATTCGGATGGGCACTCCTGCTACGGTAATGGTGTTACTGAAGTGCATGACGAGACAGTCAGGGCAGGCTTGCAGGAAGTGTGCCTTGGAAATTCCATTATCCtctatgtaaaaaaataataatacacacacagtaactcTCACCATCATTTCTATTTGATAATCTGCCATTAGCATAGGATGAATTGAAGCAGCCTGTTAACTAACCACTTCTGGTCTGGGATAGCTACATatttagctacagtacagtatttcACTAACACTTGAAAGGGAAAGGTACGGATCTGACTTACTTAACTGCTGTATGGTGTTCTCTACAATGGACATATTCATTATGGAGTAATTAACACAGGTGTCATCACTGAAAGATAAGAGGATATGTCCTATTAGATTCAGAGATTGCCTCATGTCTCAACTGTCAGTGGTCCAGATGTGTTCATCAAACCTATGACAAAGCAGTAGAGTAAGGAGCCACTCACATCATGTTTCCCTGTTTGAAAAGCACACTCTTGTCGCTTGATGTTGCTCGTAGTTCCACCTTGGAGCTTTTTCCCATTTTCAGTTTTTCGGCATAACCTTCATCATCTGAAAACGCCTCGATGAGAATCCATTCACCAAAGACCGTGTTGAGCTTGTCGGCAGGGAGTGGTTTGACCATTTTACCACAGTCCTCCTCAGTCAGTGGCTCAGTCGGTGGTGCCGCGGTCACCCTGCTCACTGCCAGCAGAGCCAGGAGAGCCACACCGTAGTAGTACACAACACACATGGTGGAAACTGGAACCTTATCGGAGCCACAGAACCACCCTCTAATATAGCTACAGCCTGTGGTTTGACTTTGTCCTGAGTGTGTTACAGG
>TU2597934
AAATATTTCAGTCAGTTTTATTTCTCTCCTAACAATATCTCCTGTGAACATGATTATAGCTCCAGTTTTCCATATTCCAGTTCTTAGTTTTATTTGGTCTCATTCTTCTTTGTCTCGGGGCAAAACTCTGCAACGCCATCATAGATGAACTGTGCAGGCTGAGGGAACTTGAGGCACTCGGCTTGTTTTCTGATTGGCTCCAGCTCTGATTCATGCAGTTTGCCAGTCTTTCcaaaGATATAGAAAGATCGGACCATTCGGATGGGCACTCCTGCTACGGTAATGGTGTTACTGAAGTGCATGACGAGACAGTCAGGGCAGGCTTGCAGGAAGTGTGCCTTGGAAATTCCATTATCCtTTAACTGCTGTATGGTGTTCTCTACAATGGACATATTCATTATGGAGTAATTAACACAGGTGTCATCAATCATGTTTCCCTGTTTGAAAAGCACACTCTTGTCGCTTGATGTTGCTCGTAGTTCCACCTTGGAGCTTTTTCCCATTTTCAGTTTTTCGGCATAACCTTCATCATCTGAAAACGCCTCGATGAGAATCCATTCACCAAAGACCTGTAGGGAAACATACATCACACTGGCATTCACTTTTTCAGTTGAGAACTTGCTGCATAGACATTACATATTATAAGCATGATATAAACACATAACGGCTCATAGATTTTTATAATAACTAATACAGCATCATAACTGCCAGctttaagtaaagtgttaccaaagaCTATATACAATATGCAAGATCAAGGTGAAGGCAAGAGTCATGGGTAGTCTAGTGGTGATGCTACAGCCTCTGGCATCCATGTCTTCAGTGTCAGCATGGATATGAATCTCTCCTACTGCCCTTTGACACAACCCCTTCCATCCTTTCTCAGTATGCATTCAATCAAATCAGAAAATATCAATTCCCACTCCTTAAAAAAAGTATAGGTCTGACACCCACCGTGTTGAGCTTGTCGGCAGGGAGTGGTTTGACCATTTTACCACAGTCCTCCTCAGTCAGTGGCTCAGTCGGTGGTGCCGCGGTCACCCTGCTCACTGCCAGCAGAGCCAGGAGAGCCACACCGTAGTAGTACACAACACACATGGTGGAAACTGGAACCTTATCGGAGCCACAGAACCACCCTCTAATATAGCTACAGCCTGTGGTTTGACTTTGTCCTGAGTGTGTTACAGG

Function

NR:

description
saxitoxin and tetrodotoxin-binding protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2597933 False 1334 lncRNA 0.43 2 31146374 31148092
TU2597934 True 1188 lncRNA 0.44 5 31146374 31148092
Loading

Neighbor

gene id symbol gene type direction distance location
hars LOC106611772 coding downstream 23543 31118101 ~ 31122831 (-)
LOC110504996 LOC106611770 coding downstream 53960 31073942 ~ 31092414 (-)
rap2c rap2c coding downstream 494947 30647146 ~ 30651427 (-)
zgc:92907 alg13 coding downstream 499383 30643575 ~ 30646991 (-)
LOC110504991 LOC106611768 coding downstream 522821 30612746 ~ 30623553 (-)
LOC110505004 LOC102314576 coding upstream 24056 31172148 ~ 31175109 (-)
LOC110505008 LOC106611777 coding upstream 35133 31183225 ~ 31186186 (-)
LOC110505005 naa15 coding upstream 45610 31193702 ~ 31206251 (-)
LOC118946086 NA coding upstream 47152 31195244 ~ 31195378 (-)
LOC110505012 NA coding upstream 101337 31249429 ~ 31251347 (-)
G2271148 NA non-coding downstream 21307 31124825 ~ 31125067 (-)
G2271146 NA non-coding downstream 30892 31115139 ~ 31115482 (-)
G2271144 NA non-coding downstream 33545 31112531 ~ 31112829 (-)
G2271141 NA non-coding downstream 36183 31109909 ~ 31110191 (-)
G2271140 NA non-coding downstream 38406 31107705 ~ 31107968 (-)
G2271160 NA non-coding upstream 3209 31151301 ~ 31151525 (-)
G2271182 NA non-coding upstream 40339 31188431 ~ 31189337 (-)
G2271175 ndufc1 non-coding upstream 58420 31206512 ~ 31208139 (-)
G2271189 NA non-coding upstream 60831 31208923 ~ 31209125 (-)
G2271190 NA non-coding upstream 61713 31209805 ~ 31210618 (-)
LOC110504988 LOC106515624 other downstream 571104 30566629 ~ 30575299 (-)
G2270673 LOC106611749 other downstream 826457 30283733 ~ 30319917 (-)
G2270186 NA other downstream 1074245 30070378 ~ 30072129 (-)
G2269291 NA other downstream 2511075 28634930 ~ 28635299 (-)
G2269277 NA other downstream 2539586 28606400 ~ 28606788 (-)
G2272324 NA other upstream 1105291 32253383 ~ 32253938 (-)
LOC110505054 LOC106611652 other upstream 2163824 33308270 ~ 33313952 (-)
LOC110505064 LOC106611642 other upstream 2550493 33693783 ~ 33765421 (-)
LOC110505071 LOC106611637 other upstream 2918603 34008192 ~ 34106811 (-)

Expression

G2271158(LOC106611802) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 25.
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G2271158(LOC106611802) Expression in each Bioproject

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G2271158(LOC106611802) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 1250.
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Co-expression Network