XLOC_004160 (utp3)


Basic Information

Item Value
gene id XLOC_004160
gene name utp3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 26370381 ~ 26375575 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007949
ATTTGACAGCTAGTAAAGGAAGTACTTATAATTTACTTCCTGTTCTGTACTCATGTGGGAAGTCCACGCGGGTGGTTTTTGGTCTGTTTTCACCCTGTTGTATCTTGCTTGATGAGCGATATTCTATTAGGGAACTATTGTAATAATCAGGTAATTAGATTAAACAGTACTTTTATAACTCTTCGGCAAAATGGTCCGAGCAAGAAGGGCAGTAAAGAAGCCTAGAACAAAAAAGCAACAAGAATACGACAGTGATGATCCTGAAGCGTATACAAATGAAGCCATTCCTGATAAGAAATCTTCATCTTATGTGGAAGATAAAGTAGATGAATTCCACAATGAAAAAATATCAAAACTCTTAGCCCGAGGAGTTCCAGAAATCAGTGATGAAGAGGATGAAGATAAAGCGGTGGAGGTCATGCCCTTGACACTTTCTGAgtcagatgaagatgatgatgaagaaaaagaagaggaagaggatgatgatgatgatgaggaagaTGGGACAGACATGGAGAGCGATCTAGAAGGAAAGAAAGATGACGATCTCCCGAATGACTTGGCTTGGGGAAACAAAAAGAAGATTTTCTATGATACTGATTATGCCACAAAAAAGGGCAAATCTCTTGAAGAAATTGAGGCAGAAGACAAAGAAGAGGAAGACGAGGCTACAAAAATTCAAAAGAGATTAGCAGCTAAACTGAGCGAAGAAGACTATGATTTAAATCTGCTTGAaGAGTTTGTTGTGGACGCTGAAGTGGAGAAGGAGGTGAAGAAAGAGGAAAGGATTGTGAAAGATTTAAAGACCTTGTCACAAAAGGAAAAACTCAAACTTCTGAAGAAAGAATCACCAGAGTTGTTGGAACTTATTCAGGATTTTAAAGCAAAGCTTACAGAATTGAGGGATGAAGTTCAGCCACTTGTGAAGATGGTCAAGAATGGACGGATTCCTCCTGGAAAGGGTGCCAATTACATCATTACAAAACAACAACTTTATCTTAACTACTGCACAAACATTAGTTTCTATTTGGTTTTGAAAGCTAAGCGAATTCCTGCACATAACCATCCTGTGATTGAAAGATTGCTGACCTACAGAAATCTGATAAATGAATTAGGAGCAGTAGATGCTAGACTGGCTCCTCAACTGCGTCAGCTTCTCTCTGGAGAAAAGCCAGACAGACTGCCAAAGAGATTACCAGGCAGCAAACATACCAAAttaacaGAAAAGGCTGGGTTGGAAGAAGCCGAAGAGTCAGAATCGGATGAGGAAGCAAATTTGCGCTTCTATAACGCCATGGCGGAGAAACAGAAACTCAAGAGGAAGAAGAGTGAGATGCAGAATGAGGACAAATTGGAGGAGAATGAAGAAATGGAGGGAGATGCTAAAAGAAGAATCACATATGAGatGTCCAAGAATAAAGGACTCACACCCAAGAGGAAGAAGATTGACCGGAATCCAAGAGTCAAGCACAGAGAGAAATTTAGACGTGCTCAGATTCGCCGCAAGGGTCAGGTTCGTGAGGTGCGGCATGAGGAAGCGAGATACAGCGGAGAATGGTCTGGTATTCGTGCTGGAGTTAAGAGAAGTGTCAAACTCAAGTGATCAATCTACATATGATCCTCATAAAAGATTGAATGTGCTATTAAAATGGACTTTTCTAGTGtttctgcaaaaatattatacttatttttttcaaacatcaacatacactgtaaaaaatgctggttcccaacacaaatcaattaagttaactcaattgtttttacaaatttaagtggattgaacataaaacaattaaattgtcccaaATAAACCGTAAAAAATActctttttacacattttacgCAAGACGTTTTAACGAGCAGTTATTTTTGTGTATGCAAATGACACTTTGTACAATGAGATAAAATGAGTTCTGATAACATCGACATGCTAAAATGTTaccatattaaaaatgttttgaacttCAAA
>TCONS_00007950
GGAAGTCCACGCGGGTGGTTTTTGGTCTGTTTTCACCCTGTTGTATCTTGCTTGATGAGCGATATTCTATTAGGGAACTATTGTAATAATCAGGTAATTAGATTAAACAGTACTTTTATAACTCTTCGGCAAAATGGTCCGAGCAAGAAGGGCAGTAAAGAAGCCTAGAACAAAAAAGCAACAAGAATACGACAGTGATGATCCTGAAGCGTATACAAATGAAGCCATTCCTGATAAGAAATCTTCATCTTATGTGGAAGATAAAGTAGATGAATTCCACAATGAAAAAATATCAAAACTCTTAGCCCGAGGAGTTCCAGAAATCAGTGATGAAGAGGATGAAGATAAAGCGGTGGAGGTCATGCCCTTGACACTTTCTGAgtcagatgaagatgatgatgaagaaaaagaagaggaagaggatgatgatgatgatgaggaagaTGGGACAGACATGGAGAGCGATCTAGAAGGAAAGAAAGATGACGATCTCCCGAATGACTTGGCTTGGGGAAACAAAAAGAAGATTTTCTATGATACTGATTATGCCACAAAAAAGGGCAAATCTCTTGAAGAAATTGAGGCAGAAGACAAAGAAGAGGAAGACGAGGCTACAAAAATTCAAAAGAGATTAGCAGCTAAACTGAGCGAAGAAGACTATGATTTAAATCTGCTTGAagtactatattttatttatttaataaaggcACTGGTAGAGGCCAT

Function

symbol description
utp3 Enables enzyme inhibitor activity. Acts upstream of or within with a positive effect on cellular protein-containing complex localization; digestive system development; and protein localization to nucleolus. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Is expressed in several structures, including brain; digestive system; and endoderm. Orthologous to human UTP3 (UTP3 small subunit processome component).

GO:

id name namespace
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0032040 small-subunit processome cellular_component
GO:0005730 nucleolus cellular_component

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-040912-163 Enables enzyme inhibitor activity. Acts upstream of or within with a positive effect on cellular protein-containing complex localization; digestive system development; and protein localization to nucleolus. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Is expressed in several structures, including brain; digestive system; and endoderm. Orthologous to human UTP3 (UTP3 small subunit processome component).

Ensembl:

ensembl_id ENSDARG00000056720

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007949 False 1972 mRNA 0.38 16 26370381 26375575
TCONS_00007950 True 723 processed_transcript 0.38 7 26373998 26375518

Neighbor

gene id symbol gene type direction distance location
XLOC_004159 foxj3 coding downstream 8047 26228918 ~ 26362334 (-)
XLOC_004158 prdm2b coding downstream 152871 26189703 ~ 26217510 (-)
XLOC_004157 kaznb coding downstream 189667 25857941 ~ 26180714 (-)
XLOC_004156 tmem51b coding downstream 517169 25833219 ~ 25853212 (-)
XLOC_004155 skib coding downstream 540669 25782721 ~ 25829712 (-)
XLOC_004161 st3gal8 coding upstream 192917 26568492 ~ 26590429 (-)
XLOC_004162 efcc1 coding upstream 243558 26619133 ~ 26666627 (-)
XLOC_004163 acad9 coding upstream 310407 26685982 ~ 26701611 (-)
XLOC_004164 iqsec1b coding upstream 328606 26704181 ~ 27057572 (-)
XLOC_004165 CR847934.1 coding upstream 372717 26748292 ~ 26748429 (-)
XLOC_004063 CR854846.1 misc downstream 10242703 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 13678690 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 13748614 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 13779085 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 13857119 12512966 ~ 12513262 (-)
XLOC_004152 CR933820.1 non-coding downstream 700426 25669839 ~ 25669955 (-)
XLOC_004150 NA non-coding downstream 893401 25475305 ~ 25476980 (-)
XLOC_004147 NA non-coding downstream 961485 25368112 ~ 25408896 (-)
XLOC_004144 dre-mir-499 non-coding downstream 1165138 25205153 ~ 25205243 (-)
XLOC_004142 CR628365.2 non-coding downstream 1402494 24967771 ~ 24967887 (-)
XLOC_004167 NA non-coding upstream 1126630 27502205 ~ 27507973 (-)
XLOC_004169 NA non-coding upstream 1168003 27543578 ~ 27625465 (-)
XLOC_004173 BX601648.1 non-coding upstream 1408183 27783758 ~ 27806767 (-)
XLOC_004174 NA non-coding upstream 1425284 27800859 ~ 27809715 (-)

Expression


Co-expression Network