XLOC_004161 (st3gal8)


Basic Information

Item Value
gene id XLOC_004161
gene name st3gal8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 26568492 ~ 26590429 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007951
ATGCAATAGTGGGTTCTGCGTTTACTCGCCCACAGTCGGTAGCGGAGAGCAGGGCGgTTCTTTTGCAAAACTGGGTATTCATTAAAATGAGGATTAAAATCTGAGCAGAAAGGCTGAACAGAAAGGAAGTGAACCTGCTTCGTCATCTGACTCATTTGCTTTCCTGTTTTGAACATCGAGAAATATCATGCCTGTCACCTTTTAGCATGTTCCACTGTGAGAACTTGTGCTTTGACTTTGCAAAATCATGAAAGGACGGAGAGACAGAACGAGGTCATAATGTACTGAATAGCCTTTAAGATCCAGTCATGAACTCAATTGATTATTGAAGATCATGTCATTTCCCACCTCACATgccattttgtttttgtaaagcaACTCCTTACAGACCATAAAACCCACAATCCATTTGGCAGGAAATAGCCAGACGTGAATTCCGGTTACTGTGGTGGTTCTTTAAAATCTTTTCCTCCTGAAAATCCACCCTGAGGTTTAGTCTGCCTTAACCATGATGTCTAGAAGAAAACTGTGCTTAGGCGCTTTACTGGGTGCTATTCTGTTTTTAATGATAGCTGCTCACACCATTCAGAAGGCCGGTGTTGTGCCCATCACGGATTTACCCACTCACCATGATGTCAGGATACCAGTGAAGAACCAGACTCTGTTACACCCCGTCACTGAGCCAAGACGAGGTCATTCCTGTAGCTGTACATCATGTATAGCAGACAGAGGTGTGTCAGAGTGGTTTGACCAACGCTATGATCAGAAACAGAAACCTTACCTCACCGGCAGAGATGATGACGTAGATCCACTTTCTCTGAAGTGGTGGCTGTCTCTGCAGGCATCTGATGGAACGATTAAAGACGTCACTCAGAAGATGTTTAAGATAATTTCCCCTCCACATGAGGATGAAACACCACGGCAGAACCAGTGCCGGAAGTGTGCAGTTGTTGGGAACTCGGGGAACCTGTTAAAGTCCAAATATGGAGCCTTGATAGATTCTCACTCAACAGTTATTAGAATGAATAAGGCTGTAACTGTGGGTTATGACGAGGATGTTGGTAACCGAACCACCCACCACTTCTTGTACCCAGAGAGCGCCATCAATCTAAGACCTGGAGTCCATCTCGTCCTTCTTCCCTTCAAGCTGAAAGACATGCAGTGGTTGTCCAGCGCCCTTTCTACTGGAGAGATTAAAATGACGTACATGAGAGTGAAAAACCGTATAGACGCTGATAAAGACAAGGTGATGGTCGTAAATCCAGCTTTCTTTAAGTACACACACGACAAGTGGACAGAGCGTCATGGAAGATACCCGTCCACTGGGATAGTAGCCATAATATTTGCTCTGCATCTCTGTGACGAGGTGTCAGTGTTTGGATACGGGGCGGACGCTCAAGGAAATTGGCACCACTATTGGGAGTACAACAGATACGCAGGTGCCTTTCGAAAAACAGGCGTTCACAATGCTGATTTCGAGACTGAGATCATTCAGAGACTCAGCGCAGAGGGCAAAATCAAGCTGTACAGATGAGCCTGTAATTGTGGCCTTTACTGACTCGGTAGTGCTTAAAGCCTTGTAAATGCAGGGCCTGGATGCGCAGCAGCTGAACGAAAGCCAAAGAGACGCAGATCTGTGATCCACCCTGCCGATAATTGACCACTGTGAACTGCACTGAACCAAACCCACAGACATCAAGCTGTAGTCCAAGACCAAATGAACTCTTACAGTATTTCACTCGTTATGTGCCTGGAAAAAGCTAAAATACTGACAGATGTTGCCTTTCTTCCCAAGTCGGGCATTGGAACTTTTGAAGAAGACGAGCAGTTAGCCTGTTGGCTTGATCTGAGCCTCTTTGTGTTTCTTTCTTATTAAATGTGTTCTGACAA
>TCONS_00007952
ATGTCTAGAAGAAAACTGTGCTTAGGCGCTTTACTGGGTGCTATTCTGTTTTTAATGATAGCTGCTCACACCATTCAGAAGGCCGGTGTTGTGCCCATCACGGATTTACCCACTCACCATGATGTCAGGATACCAGTGAAGAACCAGACTCTGTTACACCCCGTCACTGAGCCAAGACGAGGTCATTCCTGTAGCTGTACATCATGTATAGCAGACAGAGGTGTGTCAGAGTGGTTTGACCAACGCTATGATCAGAAACAGAAACCTTACCTCACCGGCAGAGATGATGACGTAGATCCACTTTCTCTGAAGTGGTGGCTGTCTCTGCAGGCATCTGATGGAACGATTAAAGACGTCACTCAGAAGATGTTTAAGATAATTTCCCCTCCACATGAGGATGAAACACCACGGCAGAACCAGTGCCGGAAGTGTGCAGTTGTTGGGAACTCGGGGAACCTGTTAAAGTCCAAATATGGAGCCTTGATAGATTCTCACTCAACAGTTATTAGAATGAATAAGGCTGTAACTGTGGGTTATGACGAGGATGTTGGTAACCGAACCACCCACCACTTCTTGTACCCAGAGAGCGCCATCAATCTAAGACCTGGAGTCCATCTCGTCCTTCTTCCCTTCAAGCTGAAAGACATGCAGTGGTTGTCCAGCGCCCTTTCTACTGGAGAGATTAAAATGACGTACATGAGAGTGAAAAACCGTATAGACGCTGATAAAGACAAGGTGATGGTCGTAAATCCAGCTTTCTTTAAGTACACACACGACAAGTGGACAGAGCGTCATGGAAGATACCCGTCCACTGGGATAGTAGCCATAATATTTGCTCTGCATCTCTGTGACGAGGTGTCAGTGTTTGGATACGGGGCGGACGCTCAAGGAAATTGGCACCACTATTGGGAGTACAACAGATACGCAGGTGCCTTTCGAAAAACAGGCGTTCACAATGCTGATTTCGAGACTGAGATCATTCAGAGACTCAGCGCAGAGGGCAAAATCAAGCTGTACAGATGAGCCTGTAATTGTGGCC
>TCONS_00007953
AAAGCTTGACATCATTTCTCCTCAGTACATGCAATAGTGGGTTCTGCGTTTACTCGCCCACAGTCGGTAGCGGAGAGCAGGGCGTCTCTGCAGGCATCTGATGGAACGATTAAAGACGTCACTCAGAAGATGTTTAAGATAATTTCCCCTCCACATGAGGATGAAACACCACGGCAGAACCAGTGCCGGAAGTGTGCAGTTGTTGGGAACTCGGGGAACCTGTTAAAGTCCAAATATGGAGCCTTGATAGATTCTCACTCAACAGTTATTAGAATGAATAAGGCTGTAACTGTGGGTTATGACGAGGATGTTGGTAACCGAACCACCCACCACTTCTTGTACCCAGAGAGCGCCATCAATCTAAGACCTGGAGTCCATCTCGTCCTTCTTCCCTTCAAGCTGAAAGACATGCAGTGGTTGTCCAGCGCCCTTTCTACTGGAGAGATTAAAATGACGTACATGAGAGTGAAAAACCGTATAGACGCTGATAAAGACAAGGTGATGGTCGTAAATCCAGCTTTCTTTAAGTACACACACGACAAGTGGACAGAGCGTCATGGAAGATACCCGTCCACTGGGATAGTAGCCATAATATTTGCTCTGCATCTCTGTGACGAGGTGTCAGTGTTTGGATACGGGGCGGACGCTCAAGGAAATTGGCACCACTATTGGGAGTACAACAGATACGCAGGTGCCTTTCGAAAAACAGGCGTTCACAATGCTGATTTCGAGACTGAGATCATTCAGAGACTCAGCGCAGAGGGCAAAATCAAGCTGTACAGATGAG
>TCONS_00007954
gTTCTTTTGCAAAACTGGGTATTCATTAAAATGAGGATTAAAATCTGAGCAGAAAGGCTGAACAGAAAGGAAGTGAACCTGCTTCGTCATCTGACTCATTTGCTTTCCTGTTTTGAACATCGAGAAATATCATGCCTGTCACCTTTTAGCATGTTCCACTGTGAGAACTTGTGCTTTGACTTTGCAAAATCATGAAAGGACGGAGAGACAGAACGAGGTCATTCCTGTAGCTGTACATCATGTATAGCAGACAGAGGTGTGTCAGAGTGGTTTGACCAACGCTATGATCAGAAACAGAAACCTTACCTCACCGGCAGAGATGATGACGTAGATCCACTTTCTCTGAAGTGGTGGCTGTCTCTGCAGGCATCTGATGGAACGATTAAAGACGTCACTCAGAAGATGTTTAAGATAATTTCCCCTCCACATGAGGATGAAACACCACGGCAGAACCAGTGCCGGAAGTGTGCAGTTGTTGGGAACTCGGGGAACCTGTTAAAGTCCAAATATGGAGCCTTGATAGATTCTCACTCAACAGTTATTAGAATGAATAAGGCTGTAACTGTGGGTTATGACGAGGATGTTGGTAACCGAACCACCCACCACTTCTTG

Function

symbol description
st3gal8 Predicted to enable beta-galactoside (CMP) alpha-2,3-sialyltransferase activity. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including brain; cardiovascular system; paraxial mesoderm; pectoral fin; and pleuroperitoneal region. Orthologous to human ST3GAL2 (ST3 beta-galactoside alpha-2,3-sialyltransferase 2).

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0003836 beta-galactoside (CMP) alpha-2,3-sialyltransferase activity molecular_function
GO:0008373 sialyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-286 Predicted to enable beta-galactoside (CMP) alpha-2,3-sialyltransferase activity. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including brain; cardiovascular system; paraxial mesoderm; pectoral fin; and pleuroperitoneal region. Orthologous to human ST3GAL2 (ST3 beta-galactoside alpha-2,3-sialyltransferase 2).

Ensembl:

ensembl_id ENSDARG00000007494

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007951 False 1890 mRNA 0.45 7 26568492 26590401
TCONS_00007952 False 1039 mRNA 0.47 6 26568832 26576754
TCONS_00007953 False 787 mRNA 0.47 6 26568847 26590429
TCONS_00007954 True 612 processed_transcript 0.44 4 26569531 26577209

Neighbor

gene id symbol gene type direction distance location
XLOC_004160 utp3 coding downstream 192917 26370381 ~ 26375575 (-)
XLOC_004159 foxj3 coding downstream 206158 26228918 ~ 26362334 (-)
XLOC_004158 prdm2b coding downstream 350982 26189703 ~ 26217510 (-)
XLOC_004157 kaznb coding downstream 387778 25857941 ~ 26180714 (-)
XLOC_004156 tmem51b coding downstream 715280 25833219 ~ 25853212 (-)
XLOC_004162 efcc1 coding upstream 28704 26619133 ~ 26666627 (-)
XLOC_004163 acad9 coding upstream 95553 26685982 ~ 26701611 (-)
XLOC_004164 iqsec1b coding upstream 113752 26704181 ~ 27057572 (-)
XLOC_004165 CR847934.1 coding upstream 157863 26748292 ~ 26748429 (-)
XLOC_004166 wnt7aa coding upstream 896155 27486584 ~ 27501027 (-)
XLOC_004063 CR854846.1 misc downstream 10440814 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 13876801 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 13946725 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 13977196 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 14055230 12512966 ~ 12513262 (-)
XLOC_004152 CR933820.1 non-coding downstream 898537 25669839 ~ 25669955 (-)
XLOC_004150 NA non-coding downstream 1091512 25475305 ~ 25476980 (-)
XLOC_004147 NA non-coding downstream 1159596 25368112 ~ 25408896 (-)
XLOC_004144 dre-mir-499 non-coding downstream 1363249 25205153 ~ 25205243 (-)
XLOC_004142 CR628365.2 non-coding downstream 1600605 24967771 ~ 24967887 (-)
XLOC_004167 NA non-coding upstream 911776 27502205 ~ 27507973 (-)
XLOC_004169 NA non-coding upstream 953149 27543578 ~ 27625465 (-)
XLOC_004173 BX601648.1 non-coding upstream 1193329 27783758 ~ 27806767 (-)
XLOC_004174 NA non-coding upstream 1210430 27800859 ~ 27809715 (-)

Expression


Co-expression Network