spire1a (LOC106589129)


Basic Information

Item Value
gene id spire1a
gene name LOC106589129
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 316903 ~ 349528 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971641.1
AATGGAAATGCATGTCCTCAATGAGTGAAGGCAAgtgagatcaggtgggaccattctagccaatgagagggcagatatgcGTGTGAACAACAGaTAAACCCAGACCTCCCAACACTTCCTTAGAGGTGATTGAATCTCTGGGAATCATGATCTACAAGGCGTTGGACTACAGTCTGAAGGACAGCGAGGAGAGAGAGCTCAGTCCGCCTCTGGAGCAACTCATCGACATGATGACCAACatggcagagaaggagagggacagtgaCCCCTGCCATGATGAAGGTTACGAGGCCaccgaggaggaggaagacccaAACACTGTCTGTAATATTAAAAGATTCAGAGACGTGCTCACGcTGTGTACGTCCCACCTGCCCAGCCCCTCTGATGCCCCTAACCACTACCAGGCTGTGTGTCGGGCGCTCTACGCCGAGACCAGAGAGCTAAGCACCTTCCTGGAGAAGATCAGGAGTGCCAAAGAGAACCTGCGGCGGATGGCGCGAGTCACTGGAGAGGAACCCATCAGAGATGTCAACGAGCTACAGAACGCTGACTGGGCTAAGTTCTGGATGCAGGTGATGGGTGACCTGCGTAACGGGGTCAAGCTGAGGAAGGTCCAGGAGAGACAGTACAGCCCTCTACCTGTAGAGTTCCAGCTCACACCTTACGAGATGCTGATGGATGACATCCGCTTCAAACGATACAAACTACGGAACGTCATGTTACTCCAGGTGAATGGAGACATCCCTCCCAAGTTAAAGAGCGCTCATGAGGTCATCCTGGACTTCATCCGCTCCCGACCACCTCTCAACCCTGTTACTGGAAGGAAGTTGAAGCCTCACCCTGCGTGGCCGCAGACCCTACATGAGCGTCTCTTAGAGGGCATCAAACAGGAGAGGAAGCTACGGCCTGTTTCACCTGACGTGACCCGACGCAACCGCCTGGACTTGTTCACTCCAGATGCCCCCAGGAAGCACGCCACCAGCACCCTGTCCTGTCCACCAGCTCCCGGGGTGGGAGGGGCTCTGCGTCAGAGGAAGAGGCTCCTGAAGGCGCCCACGCTGTCTGAACTGGAGAGCTCAGAGTCCGATGATGAGCCCAGTCACAGCTCCTCCAGTTTGTCAGCATCCATGTTGGACGCCTCGTCTCCGGGATCTGTCCTGGGGAAGAACGcacCCCCTAGGTTCCGGCCCATCACCATGACTCCCCAGCCTGACAGTCACCCCTCCCCTCAGAGGAGACACTCCATTGAGAAGGAGCCCCCCACCAGCATACGACCCTTCACAGCCCCCACCAGACAGAGCTCCAATTCTCTGGTATGTACACTATTGTGTGCTGCATGGTATTATAGTGGACACTACTTAACTACTGTGTGCTGCATGGTATTATAGTGGACACTA
>XM_036971638.1
CGTctccacttatatcagtacatttgTAACAAGCTAAACATTACGAAACGTATATTCGGTAAAATAAGCCTAATGTAATTCGATACACTATAATAGCACTCCATACAAAAAAAAGGCTTATCTCACGCGGACAGATTTTGGGCAGAGTAAATCCTCtcgcttctcctcttcctctctgctggtGGCCACAATAAATTGCTGTAGGTGGACTCAGTGGCCGAGACAGTTGAGGAATACGGACATCACAACGCGGTTCGACGTTTATTTAGTTCTGTAGCAATACCTGTTTCGTACGCcgaaatacatatttttttctgtCGAAGACTGCCATTATTTACGTGGCTATAATAATGGTGTGAAGGTGGATAAACGGCCGGGGACCCAGGCTTCTCCAAGATTTCGGCGTTAATCAGTATCTGAACGCCGGTGCCGTGAACATGGATATCGCCGATGGAGCAGAGGAGCTTTCCTTGGAGGAAATCTTATCGTTGTACAGCCAGCCGATCAATGAAGAGCAGGGATGGGCTGTTTGTTACCAATGTTGCAGAACTTTGGTTCAGAAACACCGGAGGGTTCATTCCAAGACCTCCAGCGCTTCAGTTGGGGATTTGCCGAGAAGGATTGAAGGACCTGGCGATGTACGGATTCTGAGAGATGGAACAGTTCAATTGCACCACCAAGACAGCACAGaTAAACCCAGACCTCCCAACACTTCCTTAGAGGTGATTGAATCTCTGGGAATCATGATCTACAAGGCGTTGGACTACAGTCTGAAGGACAGCGAGGAGAGAGAGCTCAGTCCGCCTCTGGAGCAACTCATCGACATGATGACCAACatggcagagaaggagagggacagtgaCCCCTGCCATGATGAAGGTTACGAGGCCaccgaggaggaggaagacccaAACACTGTCTGTAATATTAAAAGATTCAGAGACGTGCTCACGcTGTGTACGTCCCACCTGCCCAGCCCCTCTGATGCCCCTAACCACTACCAGGCTGTGTGTCGGGCGCTCTACGCCGAGACCAGAGAGCTAAGCACCTTCCTGGAGAAGATCAGGAGTGCCAAAGAGAACCTGCGGCGGATGGCGCGAGTCACTGGAGAGGAACCCATCAGAGATGTCAACGAGCTACAGAACGCTGACTGGGCTAAGTTCTGGATGCAGGTGATGGGTGACCTGCGTAACGGGGTCAAGCTGAGGAAGGTCCAGGAGAGACAGTACAGCCCTCTACCTGTAGAGTTCCAGCTCACACCTTACGAGATGCTGATGGATGACATCCGCTTCAAACGATACAAACTACGGAACGTCATGTTACTCCAGGTGAATGGAGACATCCCTCCCAAGTTAAAGAGCGCTCATGAGGTCATCCTGGACTTCATCCGCTCCCGACCACCTCTCAACCCTGTTACTGGAAGGAAGTTGAAGCCTCACCCTGCGTGGCCGCAGACCCTACATGAGCGTCTCTTAGAGGGCATCAAACAGGAGAGGAAGCTACGGCCTGTTTCACCTGACGTGACCCGACGCAACCGCCTGGACTTGTTCACTCCAGATGCCCCCAGGAAGCACGCCACCAGCACCCTGTCCTGTCCACCAGCTCCCGGGGTGGGAGGGGCTCTGCGTCAGAGGAAGAGGCTCCTGAAGGCGCCCACGCTGTCTGAACTGGAGAGCTCAGAGTCCGATGATGAGCCCAGTCACAGCTCCTCCAGTTTGTCAGCATCCATGTTGGACGCCTCGTCTCCGGGATCTGTCCTGGGGAAGAACGcacCCCCTAGGTTCCGGCCCATCACCATGACTCCCCAGCCTGACAGTCACCCCTCCCCTCAGAGGAGACACTCCATTGAGAAGGAGCCCCCCACCAGCATACGACCCTTCACAGCCCCCACCAGACAGAGCTCCAATTCTCTGGTATGTACACTATTGTGTGCTGCATGGTATTATAGTGGACACTACTTAACTACTGTGTGCTGCATGGTATTATAGTGGACACTA
>XM_036971640.1
CGTctccacttatatcagtacatttgTAACAAGCTAAACATTACGAAACGTATATTCGGTAAAATAAGCCTAATGTAATTCGATACACTATAATAGCACTCCATACAAAAAAAAGGCTTATCTCACGCGGACAGATTTTGGGCAGAGTAAATCCTCtcgcttctcctcttcctctctgctggtGGCCACAATAAATTGCTGTAGGTGGACTCAGTGGCCGAGACAGTTGAGGAATACGGACATCACAACGCGGTTCGACGTTTATTTAGTTCTGTAGCAATACCTGTTTCGTACGCcgaaatacatatttttttctgtCGAAGACTGCCATTATTTACGTGGCTATAATAATGGTGTGAAGGTGGATAAACGGCCGGGGACCCAGGCTTCTCCAAGATTTCGGCGTTAATCAGTATCTGAACGCCGGTGCCGTGAACATGGATATCGCCGATGGAGCAGAGGAGCTTTCCTTGGAGGAAATCTTATCGTTGTACAGCCAGCCGATCAATGAAGAGCAGGGATGGGCTGTTTGTTACCAATGTTGCAGAACTTTGGTTCAGAAACACCGGAGGGTTCATTCCAAGACCTCCAGCGCTTCAGTTGGGGATTTGCCGAGAAGGATTGAAGGACCTGGCGATGTACGGATTCTGAGAGATGGAACAGTTCAATTGCACCACCAAGACAGCACAGaTAAACCCAGACCTCCCAACACTTCCTTAGAGGTGATTGAATCTCTGGGAATCATGATCTACAAGGCGTTGGACTACAGTCTGAAGGACAGCGAGGAGAGAGAGCTCAGTCCGCCTCTGGAGCAACTCATCGACATGATGACCAACatggcagagaaggagagggacagtgaCCCCTGCCATGATGAAGGTTACGAGGCCaccgaggaggaggaagacccaAACACTGTCTGTAATATTAAAAGATTCAGAGACGTGCTCACGcTGTGTACGTCCCACCTGCCCAGCCCCTCTGATGCCCCTAACCACTACCAGGCTGTGTGTCGGGCGCTCTACGCCGAGACCAGAGAGCTAAGCACCTTCCTGGAGAAGATCAGGAGTGCCAAAGAGAACCTGCGGCGGATGGCGCGAGTCACTGGAGAGGAACCCATCAGAGATGTCAACGAGCTACAGAACGCTGACTGGGCTAAGTTCTGGATGCAGGTGATGGGTGACCTGCGTAACGGGGTCAAGCTGAGGAAGGTCCAGGAGAGACAGTACAGCCCTCTACCTGTAGAGTTCCAGCTCACACCTTACGAGATGCTGATGGATGACATCCGCTTCAAACGATACAAACTACGGAACGTCATGGTTACTGGAAGGAAGTTGAAGCCTCACCCTGCGTGGCCGCAGACCCTACATGAGCGTCTCTTAGAGGGCATCAAACAGGAGAGGAAGCTACGGCCTGTTTCACCTGACGTGACCCGACGCAACCGCCTGGACTTGTTCACTCCAGATGCCCCCAGGAAGCACGCCACCAGCACCCTGTCCTGTCCACCAGCTCCCGGGGTGGGAGGGGCTCTGCGTCAGAGGAAGAGGCTCCTGAAGGCGCCCACGCTGTCTGAACTGGAGAGCTCAGAGTCCGATGATGAGCCCAGTCACAGCTCCTCCAGTTTGTCAGCATCCATGTTGGACGCCTCGTCTCCGGGATCTGTCCTGGGGAAGAACGcacCCCCTAGGTTCCGGCCCATCACCATGACTCCCCAGCCTGACAGTCACCCCTCCCCTCAGAGGAGACACTCCATTGAGAAGGAGCCCCCCACCAGCATACGACCCTTCACAGCCCCCACCAGACAGAGCTCCAATTCTCTGGTATGTACACTATTGTGTGCTGCATGGTATTATAGTGGACACTACTTAACTACTGTGTGCTGCATGGTATTATAGTGGACACTA
>XM_036971639.1
TctccacttatatcagtacatttgTAACAAGCTAAACATTACGAAACGTATATTCGGTAAAATAAGCCTAATGTAATTCGATACACTATAATAGCACTCCATACAAAAAAAAGGCTTATCTCACGCGGACAGATTTTGGGCAGAGTAAATCCTCtcgcttctcctcttcctctctgctggtGGCCACAATAAATTGCTGTAGGTGGACTCAGTGGCCGAGACAGTTGAGGAATACGGACATCACAACGCGGTTCGACGTTTATTTAGTTCTGTAGCAATACCTGTTTCGTACGCcgaaatacatatttttttctgtCGAAGACTGCCATTATTTACGTGGCTATAATAATGGTGTGAAGGTGGATAAACGGCCGGGGACCCAGGCTTCTCCAAGATTTCGGCGTTAATCAGTATCTGAACGCCGGTGCCGTGAACATGGATATCGCCGATGGAGCAGAGGAGCTTTCCTTGGAGGAAATCTTATCGTTGTACAGCCAGCCGATCAATGAAGAGCAGGGATGGGCTGTTTGTTACCAATGTTGCAGAACTTTGGTTCAGAAACACCGGAGGGTTCATTCCAAGACCTCCAGCGCTTCAGTTGGGGATTTGCCGAGAAGGATTGAAGGACCTGGCGATGTACGGATTCTGAGAGATGGAACAGTTCAATTGCACCACCAAGACAGCACAGaTAAACCCAGACCTCCCAACACTTCCTTAGAGGTGATTGAATCTCTGGGAATCATGATCTACAAGGCGTTGGACTACAGTCTGAAGGACAGCGAGGAGAGAGAGCTCAGTCCGCCTCTGGAGCAACTCATCGACATGATGACCAACatggcagagaaggagagggacagtgaCCCCTGCCATGATGAAGGTTACGAGGCCaccgaggaggaggaagacccaAACACTGTCTGTAATATTAAAAGATTCAGAGACGTGCTCACGcTGTGTACGTCCCACCTGCCCAGCCCCTCTGATGCCCCTAACCACTACCAGGCTGTGTGTCGGGCGCTCTACGCCGAGACCAGAGAGCTAAGCACCTTCCTGGAGAAGATCAGGAGTGCCAAAGAGAACCTGCGGCGGATGGCGCGAGTCACTGGAGAGGAACCCATCAGAGATGTCAACGAGCTACAGAACGCTGACTGGGCTAAGTTCTGGATGCAGGTGATGGGTGACCTGCGTAACGGGGTCAAGCTGAGGAAGGTCCAGGAGAGACAGTACAGCCCTCTACCTGTAGAGTTCCAGCTCACACCTTACGAGATGCTGATGGATGACATCCGCTTCAAACGATACAAACTACGGAACGTCATGGTGAATGGAGACATCCCTCCCAAGTTAAAGAGCGCTCATGAGGTCATCCTGGACTTCATCCGCTCCCGACCACCTCTCAACCCTGTTACTGGAAGGAAGTTGAAGCCTCACCCTGCGTGGCCGCAGACCCTACATGAGCGTCTCTTAGAGGGCATCAAACAGGAGAGGAAGCTACGGCCTGTTTCACCTGACGTGACCCGACGCAACCGCCTGGACTTGTTCACTCCAGATGCCCCCAGGAAGCACGCCACCAGCACCCTGTCCTGTCCACCAGCTCCCGGGGTGGGAGGGGCTCTGCGTCAGAGGAAGAGGCTCCTGAAGGCGCCCACGCTGTCTGAACTGGAGAGCTCAGAGTCCGATGATGAGCCCAGTCACAGCTCCTCCAGTTTGTCAGCATCCATGTTGGACGCCTCGTCTCCGGGATCTGTCCTGGGGAAGAACGcacCCCCTAGGTTCCGGCCCATCACCATGACTCCCCAGCCTGACAGTCACCCCTCCCCTCAGAGGAGACACTCCATTGAGAAGGAGCCCCCCACCAGCATACGACCCTTCACAGCCCCCACCAGACAGAGCTCCAATTCTCTGGTATGTACACTATTGTGTGCTGCATGGTATTATAGTGGACACTACTTAACTACTGTGTGCTGCATGGTATTATAGTGGACACTA

Function

NR:

description
protein spire homolog 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971641.1 False 1400 mRNA 0.55 11 316903 349528
XM_036971638.1 False 1997 mRNA 0.52 11 317030 349528
XM_036971640.1 False 1904 mRNA 0.52 10 317030 349528
XM_036971639.1 True 1986 mRNA 0.52 11 317032 349528

Neighbor

gene id symbol gene type direction distance location
rpl30 LOC106589133 coding upstream 77335 233676 ~ 240640 (+)
LOC110489350 uk114 coding upstream 111386 175807 ~ 205517 (+)
stk3 stk3 coding upstream 142476 154976 ~ 174427 (+)
rnf19a LOC106570787 coding upstream 183510 79928 ~ 134719 (+)
pabpc1b LOC106570793 coding upstream 256226 45493 ~ 60677 (+)
psmg2 psmg2 coding downstream 126704 476232 ~ 482157 (+)
seh1l seh1l coding downstream 215596 565124 ~ 587159 (+)
rnmt rnmt coding downstream 247234 596762 ~ 616427 (+)
rims2b LOC106570772 coding downstream 389093 738621 ~ 899937 (+)
LOC110487806 LOC106570773 coding downstream 586794 936322 ~ 962116 (+)
G2287282 NA non-coding upstream 2269 314435 ~ 314634 (+)
G2287241 NA non-coding upstream 5351 310652 ~ 311552 (+)
G2287242 NA non-coding upstream 6610 309918 ~ 310293 (+)
G2287280 NA non-coding upstream 12902 303539 ~ 304001 (+)
G2287264 NA non-coding upstream 14011 255041 ~ 302892 (+)
G2287437 NA non-coding downstream 45533 395061 ~ 402253 (+)
G2287439 NA non-coding downstream 47659 397187 ~ 401790 (+)
G2287445 NA non-coding downstream 52815 402343 ~ 403679 (+)
G2287448 NA non-coding downstream 87220 436748 ~ 437227 (+)
G2287449 NA non-coding downstream 89578 439106 ~ 463255 (+)
G2287470 NA other downstream 137265 486793 ~ 487661 (+)
G2287973 NA other downstream 923846 1273374 ~ 1274170 (+)
triqk triqk other downstream 1859594 2209019 ~ 2255119 (+)
G2288669 NA other downstream 1972346 2321874 ~ 2324182 (+)
G2288814 NA other downstream 2030919 2380447 ~ 2381395 (+)

Expression


Co-expression Network