seh1l (seh1l)


Basic Information

Item Value
gene id seh1l
gene name seh1l
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 565124 ~ 587159 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559715.2
AGTCATAAACTCCGCCTATTTCTACAACTACTCATTTTAAACTGTGATTTTGAATCTAGCCTAAACCAAACTTCTAACATCATGCCTAACCGGAAATTAAGACCggaaatatatttatttgtatgcatttttacgttaatgactttgtggctgtggtaactagagGAAACCTTCGgtatctttcaaaaacaaagattTTTTTATGTCATTCGAGATAATAAATGCTCACTTTTAAGGCACATAGTGACTGCGACCTGGTTTCGAGAGACTAATTAATTCATATAGTTTGGGACTATGATATAGTTTGCATCGGCACAATTGGGCAGTCAAATATTATGAAGATAGAGGTGGCGTATTTCAGCTAAAGCTTGGCAGTGAAACGACTTTTTATAAAAATGGCGTCGACCAATGCTACCTATCCCATAGTATAGTAAACTCACATGTAACGTGGTATATTTGTTGCTACATTTATCGAGCAGACTTTTCCCCAAACAGAAATGTTTGTCGCTCGAAGTATTGCAGCGGACCACAAGGATCTTATTCATGATGTTTCATATGATTTCCATGGCCGGAGAATGGCAACTTGCTCTAGTGACCAAAGTGTCAAGGTGTGGGACAAGAGTGACAACGGAGAGTGGAACTGCACTGCCAGCTGGAAGACCCATAGTGGATCAGTGTGGAGGGTGACCTGGGCCCATCCAGAGTTTGGTCAGGTGCTGGCCTCCTGCTCCTTCGACCGGACCGCTGCTGTGTGGGAGGAGATCGTTGGGGAGTCCAATGACAAACAGCGAGGACTCAGTCACTGGATCAAGAGGACCACTCTGGTGGACAGCAGAACGTCGGTGACTGACGTGAAGTTTGCTCCTAAACACATGGGTCTGATGCTGACCACGTGCTCAGCAGATGGGGTTATGAGGGTCTACGAGGCTCCAGACGTAATGAACCTCAGCCAGTGGTCCCTGCAGCAGGAGATCTCCTCTAAACTCAGCTGCTCCTGTATCTCCTGGAGCCCCTCCAGCTCCCGTGCCCACGCCCCCATGATAGCAGTGGGCTCTGATGACAGCAACACAGCATACAGCGGGAAAGTTCACATCTATGAATACATTGAAAACACAAGGAAGTATGCTAAGGCAGAAAATCTGATGACGGTGACAGATCCAGTCCATGACATTGCCTTTGCTCCCAACTTGGGACGCTCTTTTCACGTGCTCGCCATCGCCACCAAAGACGTACGCATCTTCAAGCTGATACCACTGAGGAAAGAGTCTGCAGCGGGGTCGTCTGGTCCCACTAAGCTGCAGGTTCAGATCCTGGCCCAGTTTGACAACCACAACTCCCAGGTGTGGAGAGTCTCCTGGAACATCAGCAGCACCCTGCTTGCCTCCTCAGGGGATGATGGCTGTGTCCGGCTCTGGAAAGccaACTACATGGATAACTGGAAGTGTACAGCCATCCTGAGAGGAGATGGTAGCCCAGTGACGGGCTCTTCCAGTCAGGCTGCAGTCCCCAGCACAGCAGGGGGACcacaacatgtcctgctgcaaGCGTCCTCCGCTGGAAGAAAGAAAGCTCAGCTGATACCTGGCTAACAGAGTGGCTTGATGCTGCTGCTtgttgcatgaacacacacacacacacacacaggaatggaAAGGGAACTCCCTCACCCTGCAGACCAACCTCCCAGAAACACCTCTGAACCCTTTTTTATGCTAATCAAGAACCACACTGACTCCTAGATCAGGGTTCTAGATCAAAGTTCCAGGGTGGATTTTATGTCAATATTGACTGTTATGCTACTGAATGAAGTATCCTGTTGGGGTGTATCTGACTGTAGAACTACTTGGGAGTATGGGTTTAggtgtggtgagagagagggaaccacTGGTGACATTGCGGTGGGTTCTAAGACGTAATGGGTGGGTTTAGGTGTGGTGAGAGAGGGAACCACTGGTGACATTGCGGTGGGTTCTAAGACATAATGGGTGGGTTTAGGTGTGGTGAGAGAGGGAACCACTGGTGACATTGCGGTGGGTTCTAAGACATAATGGGTGGGTTTAGAGTAACTTTACAAAAATGTCTCGGTTTCCCAGAAATCCAGGTTGGAACATTCCTGGAATTAGGagagaataagcaggaaatcccaGAACCTTTTTTTCCTTGAAAACCAGGGAACTTGCAACCCTAAGTTTTGCAACCATATGTGGGTTCTAGTTAGTTCTAGGTAATATTTTGGAGGGTTCTGCATAATGTAAATTACCCTGTGGTTCTGCCTGGTGGATGAGGTAGTTCTGCCTGGTGGATGGGGTGgttctgcctgactgactgactggtggatGAGGTggttctgactgactgactggtggatGAGGTGGTTCTGCCTGGATGACTGGTGGATGAGGTGGTTCTGCCTGGATGACTGGTGGATGAGGTGGTTCTGCCTGGATGACTGGTGGATGAGGTGgttctgcctgactgactgactgactggtggatGAGGTGGTTCTGACCGGTGGATGATGTGGTTCTGCCTGGATGACTGGTGGTTGAGAAGACGACGTCTGAGACTAACGTTAAAATCTTTGGGGCGATGAATAATTTATGAAAAACAATTAATTCTGTATAATAAAGTTTGTTTAATCCAGTGTT
>XR_005041297.1
AGTCATAAACTCCGCCTATTTCTACAACTACTCATTTTAAACTGTGATTTTGAATCTAGCCTAAACCAAACTTCTAACATCATGCCTAACCGGAAATTAAGACCggaaatatatttatttgtatgcatttttacgttaatgactttgtggctgtggtaactagagGAAACCTTCGgtatctttcaaaaacaaagattTTTTTATGTCATTCGAGATAATAAATGCTCACTTTTAAGGCACATAGTGACTGCGACCTGGTTTCGAGAGACTAATTAATTCATATAGTTTGGGACTATGATATAGTTTGCATCGGCACAATTGGGCAGTCAAATATTATGAAGATAGAGGTGGCGTATTTCAGCTAAAGCTTGGCAGTGAAACGACTTTTTATAAAAATGGCGTCGACCAATGCTACCTATCCCATAGTATAGTAAACTCACATGTAACGTGGTATATTTGTTGCTACATTTATCGAGCAGACTTTTCCCCAAACAGAAATGTTTGTCGCTCGAAGTATTGCAGCGGACCACAAGGATCTTATTCATGATGTTTCATATGATTTCCATGGCCGGAGAATGGCAACTTGCTCTAGTGACCAAAGTGTCAAGGTGTGGGACAAGAGTGACAACGGAGAGTGGAACTGCACTGCCAGCTGGAAGACCCATAGTGGATCAGTGTGGAGGGTGACCTGGGCCCATCCAGAGTTTGGTCAGGTGCTGGCCTCCTGCTCCTTCGACCGGACCGCTGCTGTGTGGGAGGAGATCGTTGGGGAGTCCAATGACAAACAGCGAGGACTCAGTCACTGGATCAAGAGGACCACTCTGGTGGACAGCAGAACGTCGGTGACTGACGTGAAGTTTGCTCCTAAACACATGGGTCTGATGCTGACCACGTGCTCAGCAGATGGGGTTATGAGGGTCTACGAGGCTCCAGACGTAATGAACCTCAGCCAGTGGTCCCTGCAGCAGGAGATCTCCTCTAAACTCAGCTGCTCCTGTATCTCCTGGAGCCCCTCCAGCTCCCGTGCCCACGCCCCCATGATAGCAGTGGGCTCTGATGACAGCAACACAGCATACAGCGGGAAAGTTCACATCTATGAATACATTGAAAACACAAGGAAGTATGCTAAGGCAGAAAATCTGATGACGGTGACAGATCCAGTCCATGACATTGCCTTTGCTCCCAACTTGGGACGCTCTTTTCACGTGCTCGCCATCGCCACCAAAGACGTACGCATCTTCAAGCTGATACCACTGAGGAAAGAGTCTGCAGCGGGGTCGTCTGGTCCCACTAAGCTGCAGGTTCAGATCCTGGCCCAGTTTGACAACCACAACTCCCAGGTGTGGAGAGTCTCCTGGAACATCAGCAGCACCCTGCTTGCCTCCTCAGGGGATGATGGCTGTGTCCGGCTCTGGAAAGccaACTACATGGATAACTGGAAGTGTACAGCCATCCTGAGAGGAGATGGTAGCCCAGTGACGGGCTCTTCCAGTCAGGCTGCAGTCCCCAGCACAGCAGGGGGACcacaacatgtcctgctgcaaGCGTCCTCCGCTGGAAGAAAGAAAGCTCAGCTGATACCTGGCTAACAGAGTGGCTTGATGCTGCTGCTtgttgcatgaacacacacacacacacacacaggaatggaAAGGGAACTCCCTCACCCTGCAGACCAACCTCCCAGAAACACCTCTGAACCCTTTTTTATGCTAATCAAGAACCACACTGACTCCTAGATCAGGGTTCTAGATCAAAGTTCCAGGGTGGATTTTATGTCAATATTGACTGTTATGCTACTGAATGAAGTATCCTGTTGGGGTGTATCTGACTGTAGAACTACTTGGGAGTATGGGTTTAggtgtggtgagagagagggaaccacTGGTGACATTGCGGTGGGTTCTAAGACGTAATGGGTGGGTTTAGGTGTGGTGAGAGAGGGAACCACTGGTGACATTGCGGTGGGTTCTAAGACATAATGGGTGGGTTTAGAGTAACTTTACAAAAATGTCTCGGTTTCCCAGAAATCCAGGTTGGAACATTCCTGGAATTAGGagagaataagcaggaaatcccaGAACCTTTTTTTCCTTGAAAACCAGGGAACTTGCAACCCTAAGTTTTGCAACCATATGTGGGTTCTAGTTAGTTCTAGGTAATATTTTGGAGGGTTCTGCATAATGTAAATTACCCTGTGGTTCTGCCTGGTGGATGAGGTAGTTCTGCCTGGTGGATGGGGTGgttctgcctgactgactgactggtggatGAGGTggttctgactgactgactggtggatGAGGTGGTTCTGCCTGGATGACTGGTGGATGAGGTGGTTCTGCCTGGATGACTGGTGGATGAGGTGGTTCTGCCTGGATGACTGGTGGATGAGGTGgttctgcctgactgactgactgactggtggatGAGGTGGTTCTGACCGGTGGATGATGTGGTTCTGCCTGGATGACTGGTGGTTGAGAAGACGACGTCTGAGACTAACGTTAAAATCTTTGGGGCGATGAATAATTTATGAAAAACAATTAATTCTGTATAATAAAGTTTGTTTAATCCAGTGTT
>TU2615640
gtccttTGTCATCTCcgtgtctatctctctccccagccaACTACATGGATAACTGGAAGTGTACAGCCATCCTGAGAGGAGATGGTAGCCCAGTGACGGGCTCTTCCAGTCAGGCTGCAGTCCCCAGCACAGCAGGGGGACcacaacatgtcctgctgcaaGCGTCCTCCGCTGGAAGAAAGAAAGCTCAGCTGATACCTGGCTAACAGAGTGGCTTGATGCTGCTGCTtgttgcatgaacacacacacacacacacacaggaatggaAAGGGAACTCCCTCACCCTGCAGACCAACCTCCCAGAAACACCTCTGAACCCTTTTTTATGCTAATCAAGAACCACACTGACTCCTAGATCAGGGTTCTAGATCAAAGTTCCAGGGTGGATTTTATGTCAATATTGACTGTTATGCTACTGAATGAAGTATCCTGTTGGGGTGTATCTGACTGTAGAACTACTTGGGAGTATGGGTTTAggtgtggtgagagagagggaaccacTGGTGACATTGCGGTGGGTTCTAAGACGTAATGGGTGGGTTTAGGTGTGGTGAGAGAGGGAACCACTGGTGACATTGCGGTGGGTTCTAAGACATAATGGGTGGGTTTAGGTGTGGTGAGAGAGGGAACCACTGGTGACATTGCGGTGGGTTCTAAGACATAATGGGTGGGTTTAGAGTAACTTTACAAAAATGTCTCGGTTTCCCAGAAATCCAGGTTGGAACATTCCTGGAATTAGGagagaataagcaggaaatcccaGAACCTTTTTTTCCTTGAAAACCAGGGAACTTGCAACCCTAAGTTTTGCAACCATATGTGGGTTCTAGTTAGTTCTAGGTAATATTTTGGAGGGTTCTGCATAATGTAAATTACCCTGTGGTTCTGCCTGGTGGATGAGGTAGTTCTGCCTGGTGGATGGGGTggttctgactgactgactggtggatGAGGTGGTTCTGCCTGGATGACTGGTGGATGAGGTGGTTCTGCCTGGATGACTGGTGGATGAGGTGGTTCTGCCTGGATGACTGGTGGATGAGGTGgttctgcctgactgactgactgactggtggatGAGGTGGTTCTGACCGGTGGATGATGTGGTTCTGCCTGGATGACTGGTGGTTGAGAAGACGACGTCTGAGACTAACGTTAAAATCTTTGGGGCGATGAATAATTTATGAAAAACAATTAATTCTGTATAATAAAGTTTGTTTAATCCAG

Function

symbol description
seh1l Predicted to enable structural molecule activity. Predicted to be involved in several processes, including attachment of mitotic spindle microtubules to kinetochore; cellular response to amino acid starvation; and positive regulation of TORC1 signaling. Predicted to act upstream of or within several processes, including chromosome segregation; mRNA transport; and protein transport. Predicted to be located in lysosomal membrane. Predicted to be part of Seh1-associated complex and nuclear pore outer ring. Predicted to colocalize with kinetochore. Orthologous to human SEH1L (SEH1 like nucleoporin).

NR:

description
nucleoporin seh1

GO:

id name namespace
GO:0006999 nuclear pore organization biological_process
GO:0015031 protein transport biological_process
GO:0051028 mRNA transport biological_process
GO:0007080 mitotic metaphase plate congression biological_process
GO:0051315 attachment of mitotic spindle microtubules to kinetochore biological_process
GO:0000777 condensed chromosome kinetochore cellular_component
GO:0031080 nuclear pore outer ring cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559715.2 False 2649 mRNA 0.48 9 565124 587159
XR_005041297.1 False 2583 mRNA 0.48 10 565124 587159
TU2615640 True 1228 lncRNA 0.48 3 585359 587155

Neighbor

gene id symbol gene type direction distance location
psmg2 psmg2 coding upstream 82967 476232 ~ 482157 (+)
spire1a LOC106589129 coding upstream 215596 316903 ~ 349528 (+)
rpl30 LOC106589133 coding upstream 325556 233676 ~ 240640 (+)
LOC110489350 uk114 coding upstream 359607 175807 ~ 205517 (+)
stk3 stk3 coding upstream 390697 154976 ~ 174427 (+)
rnmt rnmt coding downstream 9603 596762 ~ 616427 (+)
rims2b LOC106570772 coding downstream 151462 738621 ~ 899937 (+)
LOC110487806 LOC106570773 coding downstream 349163 936322 ~ 962116 (+)
ncaldb LOC105006551 coding downstream 693774 1280933 ~ 1361298 (+)
LOC110511936 spire1 coding downstream 1013191 1600350 ~ 1639573 (+)
G2287473 NA non-coding upstream 15874 499394 ~ 549250 (+)
G2287469 NA non-coding upstream 78519 485396 ~ 486605 (+)
G2287466 NA non-coding upstream 81667 483183 ~ 483457 (+)
G2287464 NA non-coding upstream 82233 482560 ~ 482891 (+)
G2287456 NA non-coding upstream 93489 471322 ~ 471635 (+)
G2287528 NA non-coding downstream 55114 642273 ~ 642542 (+)
G2287529 NA non-coding downstream 59068 646227 ~ 647493 (+)
G2287532 NA non-coding downstream 62947 650106 ~ 650366 (+)
G2287538 NA non-coding downstream 102190 689349 ~ 689598 (+)
G2287539 NA non-coding downstream 102882 690041 ~ 690241 (+)
G2287470 NA other upstream 77463 486793 ~ 487661 (+)
G2287973 NA other downstream 686215 1273374 ~ 1274170 (+)
triqk triqk other downstream 1621963 2209019 ~ 2255119 (+)
G2288669 NA other downstream 1734715 2321874 ~ 2324182 (+)
G2288814 NA other downstream 1793288 2380447 ~ 2381395 (+)
G2289325 NA other downstream 2473283 3060442 ~ 3060779 (+)
G2287501 NA non-coding upstream 8238 576416 ~ 577121 (+)
G2287482 NA non-coding upstream 10237 557905 ~ 575122 (+)

Expression


Co-expression Network