LOC110487806 (LOC106570773)


Basic Information

Item Value
gene id LOC110487806
gene name LOC106570773
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 936322 ~ 962116 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559723.2
gaggaggaggaagaagacacAGCAGAGACCAAgccagtgGCGGCGGCTCCCATCCAGAGGAGCTCCAGTGTGGGAGGGGAGATGTGCTCTCTGAACAggaatgatgacgatgatgacgaCAAGAAGAGGCGCTCAAGCTTCGGTGCTAAAATAATGGGGATGGTCGGCCTCGGGAAGAAAAGCCAGAGCGCCACGCAGATCAATGATGAGGaggaggaagggaagaagaagaTAATTCGTCTGCCAGTCCAGAGGAGTGTTGAGACGGGATTGGCCATCGAGTTCAAGAGCAGATTGACACGGCAGGTCAGCCGAGAGTCTTCCGACCCTGACGCCGAGGCCAAGCCGGGAAATCTTATCTTCCCCGGTGTCCGTATCACATCTGACATCCACTTCACTGAGTTCCTGGAAGGGTTGGGCCCCGCACAGCTAGCCGGTAGACAGACACTTGCCACGCCACCAATGGGTGACATCCAGATAGGGATGGTGTACAGGAAAGAACGTCTGGACGTGGAGGTCATCAGGGCCAGAGGACTTGTGGGTAAACAAGGCAACAAGCAGCTGCCAGCCCCCTATGTGAAAGTATATCTGATGGACAACGGGAAATGCATAGTCAAAAAGAAAACCAGACTGGCAAAAAAAACATTGGATCCCCTCTACCAGCAGCAACTTCAGTTTGAGGAGAGTCCAGAGGGGAAGGTTTTACAGATAATCGTGTGGGGGGACTATGGACGCATGGACCACAAATCCTTTATGGGAGCTGCTCAGATACTTTTAGATGATTTAGACTTATCCAACATGGTGATTGGTTGGTTCAAACTGTTCCCCCCCACCTCATTGGTGGATCCAACTTTGGCACCTTTAACTAGCAAAGCAGCAGTAGCAGAACAAGCTGCAAATGCAGCAAAATTAAGGGACAGCTAACATTGTCATAGAAATAAGCAACAGGAGGTAAGTCTGCCAGGCCACACCCTCTTGGGCCAAGCCCTGGTTACCCTGGTAACACTGCATGCTTGATGTTCTGAGCCCATGAAGAGGGAGGGTAGAGTCTGGAGCAGGCCATCTGATCTTACTGCAACAAGGTGCCCCCTGCGGGTGGAACTATCTTACTGCAACATGGGTCAGGAAACCCTAACGCTAACCCCCCCGGGTCTACGCCCCTCCTAGGGAGGACCAGACAAGCACATGAAGCTGTGGCAAGAAAAGGAAAGAAGAGGTGGAATGAATTCAGTGGTACTAGATTTCAGTCTCTGTTAAATCCATGATGAGGAAATAGAATAACTAATTCATGAGTTGGATTAGGGTTAGTTGTACAGtttgtcatgacgtggccctttctgggtgtagattgtggcttccccctctctcactgtctcctacacccaggttctgttatctcatgtcgtaaattcctggcggaggctctcttcccttttcatgcagagagagagagaccacagagtgaACAATGGATTTCACGTGGCCgaactcctaaatccccaaaa
>XM_021559722.2
gaggaagaagacacAGCAGAGACCAAGTAAGTCTGAAATCTAACCAGTGACAGACAACCtgtcactaaccctaaaccctgtCACTGCTCCTGTTCCACTTATACTTGTAACCTGTGACCTTTGACCGTTGTCAGTGTCGTAGTCCCCTGTAGCTGAATCTGcatatctccctcctctcctcctattttCTCCTTCCCATATCCACTTGTCCTCTTTCCATTCCTTCCCTGTATCTTTGCTCTCTGTCCCATCTACGTAACATACTGCCCTGAGCTACCTTGCCCTGCCATGGCTGATGTTGCTGACTGACAGTAAGTTTACGTCCaaaatgataaacaggccagtgGCGGCGGCTCCCATCCAGAGGAGCTCCAGTGTGGGAGGGGAGATGTGCTCTCTGAACAggaatgatgacgatgatgacgaCAAGAAGAGGCGCTCAAGCTTCGGTGCTAAAATAATGGGGATGGTCGGCCTCGGGAAGAAAAGCCAGAGCGCCACGCAGATCAATGATGAGGaggaggaagggaagaagaagaTAATTCGTCTGCCAGTCCAGAGGAGTGTTGAGACGGGATTGGCCATCGAGTTCAAGAGCAGATTGACACGGCAGGTCAGCCGAGAGTCTTCCGACCCTGACGCCGAGGCCAAGCCGGGAAATCTTATCTTCCCCGGTGTCCGTATCACATCTGACATCCACTTCACTGAGTTCCTGGAAGGGTTGGGCCCCGCACAGCTAGCCGGTAGACAGACACTTGCCACGCCACCAATGGGTGACATCCAGATAGGGATGGTGTACAGGAAAGAACGTCTGGACGTGGAGGTCATCAGGGCCAGAGGACTTGTGGGTAAACAAGGCAACAAGCAGCTGCCAGCCCCCTATGTGAAAGTATATCTGATGGACAACGGGAAATGCATAGTCAAAAAGAAAACCAGACTGGCAAAAAAAACATTGGATCCCCTCTACCAGCAGCAACTTCAGTTTGAGGAGAGTCCAGAGGGGAAGGTTTTACAGATAATCGTGTGGGGGGACTATGGACGCATGGACCACAAATCCTTTATGGGAGCTGCTCAGATACTTTTAGATGATTTAGACTTATCCAACATGGTGATTGGTTGGTTCAAACTGTTCCCCCCCACCTCATTGGTGGATCCAACTTTGGCACCTTTAACTAGCAAAGCAGCAGTAGCAGAACAAGCTGCAAATGCAGCAAAATTAAGGGACAGCTAACATTGTCATAGAAATAAGCAACAGGAGGTAAGTCTGCCAGGCCACACCCTCTTGGGCCAAGCCCTGGTTACCCTGGTAACACTGCATGCTTGATGTTCTGAGCCCATGAAGAGGGAGGGTAGAGTCTGGAGCAGGCCATCTGATCTTACTGCAACAAGGTGCCCCCTGCGGGTGGAACTATCTTACTGCAACATGGGTCAGGAAACCCTAACGCTAACCCCCCCGGGTCTACGCCCCTCCTAGGGAGGACCAGACAAGCACATGAAGCTGTGGCAAGAAAAGGAAAGAAGAGGTGGAATGAATTCAGTGGTACTAGATTTCAGTCTCTGTTAAATCCATGATGAGGAAATAGAATAACTAATTCATGAGTTGGATTAGGGTTAGTTGTACAGtttgtcatgacgtggccctttctgggtgtagattgtggcttccccctctctcactgtctcctacacccaggttctgttatctcatgtcgtaaattcctggcggaggctctcttcccttttcatgcagagagagagagaccacagagtgaACAATGGATTTCACGTGGCCgaactcctaaatccccaaaa

Function

NR:

description
regulating synaptic membrane exocytosis protein 2-like isoform X1

GO: NA

KEGG:

id description
K15297 RIMS2, RIM2; regulating synaptic membrane exocytosis protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559723.2 False 1505 mRNA 0.51 7 936322 962116
XM_021559722.2 True 1812 mRNA 0.50 6 936328 962116

Neighbor

gene id symbol gene type direction distance location
rims2b LOC106570772 coding upstream 36385 738621 ~ 899937 (+)
rnmt rnmt coding upstream 319895 596762 ~ 616427 (+)
seh1l seh1l coding upstream 349163 565124 ~ 587159 (+)
psmg2 psmg2 coding upstream 454165 476232 ~ 482157 (+)
spire1a LOC106589129 coding upstream 586794 316903 ~ 349528 (+)
ncaldb LOC105006551 coding downstream 318817 1280933 ~ 1361298 (+)
LOC110511936 spire1 coding downstream 638234 1600350 ~ 1639573 (+)
fam91a1 LOC106589122 coding downstream 749439 1711555 ~ 1825118 (+)
lratd2a LOC106589121 coding downstream 887344 1849460 ~ 1851250 (+)
LOC118946536 NA coding downstream 930474 1892590 ~ 1893952 (+)
G2287597 NA non-coding upstream 103480 817232 ~ 832842 (+)
G2287548 NA non-coding upstream 213630 720705 ~ 722692 (+)
G2287547 NA non-coding upstream 222646 709505 ~ 713676 (+)
G2287545 NA non-coding upstream 228437 706453 ~ 707885 (+)
G2287543 NA non-coding upstream 237820 698236 ~ 698502 (+)
G2287845 NA non-coding downstream 8966 971082 ~ 971496 (+)
G2287905 NA non-coding downstream 50959 1013075 ~ 1013400 (+)
G2287930 NA non-coding downstream 79987 1042103 ~ 1042605 (+)
G2287932 NA non-coding downstream 82190 1044306 ~ 1057024 (+)
G2287935 NA non-coding downstream 101975 1064091 ~ 1084625 (+)
G2287470 NA other upstream 448661 486793 ~ 487661 (+)
rpl30 LOC106589133 other upstream 695682 233676 ~ 240640 (+)
G2287973 NA other downstream 311258 1273374 ~ 1274170 (+)
triqk triqk other downstream 1247006 2209019 ~ 2255119 (+)
G2288669 NA other downstream 1359758 2321874 ~ 2324182 (+)
G2288814 NA other downstream 1418331 2380447 ~ 2381395 (+)
G2289325 NA other downstream 2098326 3060442 ~ 3060779 (+)

Expression


Co-expression Network