ncaldb (LOC105006551)


Basic Information

Item Value
gene id ncaldb
gene name LOC105006551
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 1280933 ~ 1361298 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971390.1
TATTGGACAGTGAGTTGAAGCTGCCTAACTGAGccactccttctctcttttccctGCCTGCTACCTGTTGCTGCTTCAACTTTTAACCCCCAACCGTCCTCCACCAAAGTTCCTGAAGCTGCAGCAACTCGCAATTTGGGGTATACCATACATGGACTACTAGAGAGTCTTCAACAGGACCGCAAGTAACcTAAAACCACCAAAACATCTCAAATGGGGAAGCAGAACAGCAAACTCCGCCCAGAGGTGATGCAGGATCTGCTGGAGAGCACAGACTTCACTGAAGCTGAGATCCAGGAGTGGTATAAGGGCTTCCTGAGGGACTGCCCCAGCGGGAACCTCTCCATGGAGGAGTTTAAGAAGATCTATGGTAACTTCTTCCCTTACGGAGACGCCTCCAAGTTCGCAGAGCACGTCTTCCGCACCTTCGACGCCAACGGGGACGGGACCATAGACTTCCGGGAGTTCATAATTGCTCTGAGCGTTACGTCTCGCGGCCGCCTGGACCAAAAACTGAAGTGGGCCTTCAGCATGTACGACCTGGACGGGAACGGATACATCAGCAAGGCAGAGATGCTGGAGATcgtacagGCGATCTACAAGATGGTTTCCTCTGTCATGAAAATGCCGGAGGATGAGTCGACACCTGAGAAACGCACAGACAAAATCTTCAGGCAGATGGACACAAATCGAGATGGTAAACTGTCTCTGGAGGAGTTTGTTGAGGGAGCAAAGAACGATCCGTCTATCGTGCGGCTGCTGCAGTGTGATCCCAGCAGCGTAGGGCAGTAGAACAACCTACTGTCTGCAGGCATCTAGTATTATTTATTCAGGTCAAAGCATTCTCCTTCATTCACCCAGTAGTGACTAACTGCACAAAAGATCGACATCGAGCAGATCAAAATGGACCCAAGCAGAGGAGCCACATACTGGACTATCACATACTAGACCATCACATACTGGACCATCACATACTAGACCATCGCATACTGGACCATCACATACTGGACCACCACATACTGGACCATCACATACTAGACCATCACATACTGGGCCATCACATACTAGACCATCACATACTGGACCATCACATACTGACCATTATAATGGACCATCACATACTGGACCATCACATACTGGATCATCACATACTGGACCATCACATACTGCACCATCACATACTGCACCATCACATACTGGAACATTATACTAGACCATCACATACTGGACCATCACATACTGCACCATCACATACTGGACCGGACCATCACACACTGGGCCATCATATACTGGACCATCACATACTGCACCATTACATACTGGGCCATCACATACTAGACCATCACATACTGGACCATCGCATACTGGACCATCACATACTGGACCATCACATACTGGACCATCACATACTGCACCATCACATACTGGGCCATCACATACTAGACCATCACATACTAGACCATCACATACTGCACCATCACATACTGGACCATCACATACTGGACCATCACATACTGGACCATCACATACTGGACCATCACATACTGCACCATCACATACTGGACCATCACATACTAGACCATCACATACTGGACCATTATACTGGACCATCACATACTGGACCATTATACTGGACCATTATATTGGACCATCACATACTGGACCATCACATACTGGACCATCAAATACTGGACCATCACATACTGCACCATCACATACTGGACCATCACATGCTAGACCATCACATACTGGACCATTATACTGGACCATCACATACTGGGCCATCACATACAAGACCATCACATACTGGACCGTCACATACTAGACCATCACATACTGGACCATCATAGACATTCATTGTATTCTAATGGTTACAGTTAGGATCAAGGTTTACTATTTTGATCCAAGATCAGTGGTGAAGGGCTGTTTCTACTTAAAGCCAAGAAACACAATTCTGCCATGAGGAACTGAACTAAAAGGAGGGAGAAACGTATTGGAGAAACATGACACCAGATGGAAGCTATTGATCTCCCATACTGTAGATGGAAGCTATTGATCTCCACTACTGTAGATGGAAGCTATTGATCTCCCCTACTGTAGATGGAAGAGAGAGTGTATGAGCGAAAAGAGGTAGCTAGAATATTTATTATAATATTTGACATAGTGACAAAATATTGTGGCATTTTGCAGCCATGAAACATTTTCACTTTAAGATTTTGAATTAATAATGTTTGGAATATTTTGACTGCAAACATGATAGAATGATGTGTACAATATAATCATATTTATTGTAGGATCGTATTGAAAACAGAGAGGACTACACATGTTGCCATGCATTTATCTGTCTACATCCTCCTCTGCTTCAACTAGACTCACAGGGCAACAGCTCTCCTTTTTAGAGAAACACATCTATCATCATCATCTATCTCTAACACCAGTACTGTTCGCAGGTTTCAGATTACACCACACACAGTGAAATGTATGCCACTGGCTGGGTCCTTGAAATGCTTAAATATCCACACAGTGAAATGTATGCCACTGGCTGGGTCCCTGAAATGCTTAAATATCCACACAGTGAAATGTATGCCACTGGCTGGGTCCCTGAAATGCTTAAATATCCACACAGTGAAATGTATGCCACTGGCTGGGTCCCTGAAATGCTTAAATATCCACACAGTGAAATGTATGCCACTGGATGGGTCCCTGAAATGCTTAAATATCCACACAGTGAAATGTATGCCACTGGCTGGGTCCCTGAAATGCTTAAATATCCACACAGTGAAATGTATGCCACTGGCTGGGTCCCTGAAATGCTTAAATATCCACACAGTGAAATGTATGCCACTGGCTGGGTCCCTGAAATGCTTAAATATCCACACAGTGAAATGTATGCCACTGGCTGTGTCCCTGAATTGCTTAAATATCCACACAGTGAAATGTATGCCACTGGCTGGGTCCCTGAATTGCTTAAATATCCACACAGTGAAATGTATGCCACTGGCTGGGTCCCTGAAATGCTTAAATATCCACACAGTGAAATGTATGCCACTGGCTGGGTCCCTGAAATGCTTAAATATCCACACAGTGAAATGTATGCCACTGGCTGGGTCCCTGAAATGCTTAAATATTCACACAGTGAAATGTATGCCACTGGCTGGGTCCCTGAAATGCTTAAATATCCACACAGTGAAATGTATGCCACTGGCTGGGTCCCTGAAATGCTTAAATATCCACACAGTGAAATGTATGCCACTGACTGGGTCCCTGAAATGCTTAAATATCCACACAGTGAAATGTATGACACTGGCTGGGTCCCTGAAATGCTTAAATATCCACACAGTGAAATGTATGCCACTGGCTGGGTCCCTGAATTGCTTAAATATCCA

Function

NR:

description
neurocalcin-delta A

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K19695 NCALD; neurocalcin delta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971390.1 True 3386 mRNA 0.45 4 1280933 1361298

Neighbor

gene id symbol gene type direction distance location
LOC110487806 LOC106570773 coding upstream 318817 936322 ~ 962116 (+)
rims2b LOC106570772 coding upstream 380996 738621 ~ 899937 (+)
rnmt rnmt coding upstream 664506 596762 ~ 616427 (+)
seh1l seh1l coding upstream 693774 565124 ~ 587159 (+)
psmg2 psmg2 coding upstream 798776 476232 ~ 482157 (+)
LOC110511936 spire1 coding downstream 239052 1600350 ~ 1639573 (+)
fam91a1 LOC106589122 coding downstream 350257 1711555 ~ 1825118 (+)
lratd2a LOC106589121 coding downstream 488162 1849460 ~ 1851250 (+)
LOC118946536 NA coding downstream 531292 1892590 ~ 1893952 (+)
triqk triqk coding downstream 847721 2209019 ~ 2255119 (+)
G2287974 NA non-coding upstream 5572 1274575 ~ 1275361 (+)
G2287954 NA non-coding upstream 46710 1233466 ~ 1234223 (+)
G2287953 NA non-coding upstream 47625 1232853 ~ 1233308 (+)
G2287936 NA non-coding upstream 48955 1086363 ~ 1231978 (+)
G2287942 NA non-coding upstream 59555 1196758 ~ 1221378 (+)
G2287981 NA non-coding downstream 1824 1363122 ~ 1369617 (+)
G2288035 NA non-coding downstream 26726 1388024 ~ 1389265 (+)
G2288040 NA non-coding downstream 33238 1394536 ~ 1400935 (+)
G2288041 NA non-coding downstream 33628 1394926 ~ 1404696 (+)
G2288042 NA non-coding downstream 34172 1395470 ~ 1399949 (+)
G2287973 NA other upstream 6763 1273374 ~ 1274170 (+)
G2287470 NA other upstream 793272 486793 ~ 487661 (+)
rpl30 LOC106589133 other upstream 1040293 233676 ~ 240640 (+)
G2288669 NA other downstream 960576 2321874 ~ 2324182 (+)
G2288814 NA other downstream 1019149 2380447 ~ 2381395 (+)
G2289325 NA other downstream 1699144 3060442 ~ 3060779 (+)
G2290395 NA other downstream 3087591 4448889 ~ 4449571 (+)

Expression


Co-expression Network