LOC110511936 (spire1)


Basic Information

Item Value
gene id LOC110511936
gene name spire1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 1600350 ~ 1639573 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971668.1
GGAAAACCCCGCCCCCAGCAGTGGTGCTAAGGTGgaGGACTTCTGCTACCCTGTAGAGTGTCTGGCTCTAACAGTAGAAGaggaGGACTTCTGCTACCCTGTAGAGTGTCTGGCTCTAACAGTAGAAGAGGTGATGCACATCAGACAGGTTCTGGTCAAAGCTGAGCTGGAGAAGTTCCAACAGTACAAAGACGTCTACAATGAACTGAGGAAAGGAAAGtTGTGTTTCTCCTGTCGGACTAAAAGGTTCTCCTTCTTCAACCGGTCCTACACCTGCcaattctgcaaaaggcctgtGTGCTCTCAGTGCTGTAAAAAGGAGAGACTTCCTCTGACTCTGTCCCGTTGTTTCCAGGAGAGACTTCCTCTGACTCTGTCCCGTTGTTTCCAGGAGAGACTTCCTCTGACTCTGTCCCGTTGTTTCCAGGAGAGACTTCCTCTGACTCTGTCCCGTTGTTTCCAGGAGAGACTTCCTCTGACTCTGTCCCGTTGTTTCCAGGAGAGACTTCCTCTGACTCTGTCCCGTTGTTTCCAGGAGAGACTTCCTCTGACTCTGTCCCGTTGTTTCCAGAAGAGACTTCCATCTAAGCCGTATGCcaacctgtccatctcctctctggGATCTACTACCACCATCCTACCCAGGGAGGAGGCTGGAGGGACATCAGCCTTGGACACCCCAGAGAAGCCCTCGTCCAGCCAGCGCCTGCGCCGGACTGTCTCCAGGTTATCCAAACGCAAAATTGAGCGTTCTAGTGACGAGCTGGATCTTCCCAAGGAGCTGACAGAGGATTGGTGTACCATGGAGGTCTGCATCGACTGTAAGATGTTCATCTCTGAGATCATCTCCAGCAGCAAGCGCTCTCTGGCCACCAAGCGAGCCCATCTGAAGAGGAAAACCCAGTCCTTCTACATATCTTCAGCTAACACAGACTACTGCAGACCCTCTGAGAGGAACGTCAACGAGGTTTAACTTTAGGGTCAGACCTCTCTCTGGCCACTCCTTGGGGGCGTCTCAAatccaaattgtatttgtcacgtgcttctAAAACAGCAGTGAAATGCTTCTATTTCATGAAAAACTTCTCCATATAGGGCAGCACTTTGACCAGAGCTCAAAGGAACCAGGCTGTTTGTTGGCCATCTAGCTGTGTGATGTATTTATCATGACTCTGCTCACCCTGGCTGACACTCtatggactctggtctaaagtagtgcactgaatagggaatAGGATAGGTACCCTTTTGAGACAGTCATACTCTCTCAGCTCTTGGCTGCTCATCACTGTGTTATAATGATATAAGTGACCGTTGTAGAAGATGTTCAGTGTGTTAGTATATACTACCTACCTGAATGGATGATTCTAGACATTTGTTGAATAGACAGCATGGGTGGGTTCTCTTCCCCTAACCCCTAGTGTCAGGAACGATTGGGTTAGTGTACAGCTGTGGGCGGACGACTAGCTAGCCGTTGACAGAAACCAATTCACAGTATAGTAGTCCATTAATAAAGTGTCTACCACAGTATAGATGCGCTATTAGAATATTTAACCATTTCCTATTCTCTCACGTTCTGTGATTAAcccatatatactgaacaaacgcaacatgcaacacttTCAAAGAgtttactgagttgcagttcaggaaatcagtcaattgaaataaattcattaggccctcatcaatggattttacatgactgggcagg

Function

symbol description
spire1 Predicted to enable actin binding activity. Involved in cytoskeleton organization; positive regulation of double-strand break repair; and positive regulation of mitochondrial fission. Located in cytosol and nucleoplasm. Is integral component of mitochondrial outer membrane.

NR:

description
protein spire homolog 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971668.1 True 1714 mRNA 0.48 7 1600350 1639573

Neighbor

gene id symbol gene type direction distance location
ncaldb LOC105006551 coding upstream 239052 1280933 ~ 1361298 (+)
LOC110487806 LOC106570773 coding upstream 638234 936322 ~ 962116 (+)
rims2b LOC106570772 coding upstream 700413 738621 ~ 899937 (+)
rnmt rnmt coding upstream 983923 596762 ~ 616427 (+)
seh1l seh1l coding upstream 1013191 565124 ~ 587159 (+)
fam91a1 LOC106589122 coding downstream 71982 1711555 ~ 1825118 (+)
lratd2a LOC106589121 coding downstream 209887 1849460 ~ 1851250 (+)
LOC118946536 NA coding downstream 253017 1892590 ~ 1893952 (+)
triqk triqk coding downstream 569446 2209019 ~ 2255119 (+)
cbfa2t2 runx1t1 coding downstream 885486 2525059 ~ 2686032 (+)
G2288217 NA non-coding upstream 3200 1596675 ~ 1597150 (+)
G2288215 NA non-coding upstream 9718 1590336 ~ 1590632 (+)
G2288214 NA non-coding upstream 19097 1580953 ~ 1581253 (+)
G2288192 NA non-coding upstream 36486 1540823 ~ 1563864 (+)
G2288202 NA non-coding upstream 37156 1556098 ~ 1563194 (+)
G2288233 NA non-coding downstream 8057 1647630 ~ 1647834 (+)
G2288239 LOC106570780 non-coding downstream 13995 1653568 ~ 1659725 (+)
G2288245 NA non-coding downstream 35255 1674828 ~ 1675367 (+)
G2288246 NA non-coding downstream 37340 1676913 ~ 1677148 (+)
G2288249 NA non-coding downstream 49689 1689262 ~ 1689564 (+)
G2287973 NA other upstream 326180 1273374 ~ 1274170 (+)
G2287470 NA other upstream 1112689 486793 ~ 487661 (+)
rpl30 LOC106589133 other upstream 1359710 233676 ~ 240640 (+)
G2288669 NA other downstream 682301 2321874 ~ 2324182 (+)
G2288814 NA other downstream 740874 2380447 ~ 2381395 (+)
G2289325 NA other downstream 1420869 3060442 ~ 3060779 (+)
G2290395 NA other downstream 2809316 4448889 ~ 4449571 (+)

Expression


Co-expression Network