lratd2a (LOC106589121)


Basic Information

Item Value
gene id lratd2a
gene name LOC106589121
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 1849460 ~ 1851250 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559728.2
GTATCGCCTCCGTGGTGTTGACTACACCACTGCGGAAACTATTCATTCATCCTACTTAATCGGACAGCACAGACATAAGATACATTTTAGTCACCGGGCACAAATAACCTCAAgtctattattatttttgttattccGACCTAATCGTATTGCTCGTGATAGTTAAATGTTCCAACTTTACGCATGGAGAATAGCCTAGCGAATATCAGGTGAGGCGCGTGTAGAGGACTACACCTGAACGGATGGAATTGTATTTCCTGAATACTAATGCTGTTATTCTCCATCCATCCACAGCAAGACACTTGTTGATTTGAATAGACTTCATCACGGCAGACTGCTGCTTGGGAATACGATTTTGCTTTTGTGGGAGACCTGCCGCTACAGATTTATCGGAGCCCTTCGGGAGGGTGTCATTAGTTTTACCCGGGCTGTGTGGTACGGAGGCGGCTACAGATGGCGATGATCCTCGGCTATTAACAGCCTGACAGAAAGCAGCATCATTCCCGCATCCCTATCTGCTACCAGGGAGGAGGCATGGGCAACCAGGTGGATAAAATTAAACAGTCACAACAAAGTTACGCAGAAGTTCCCACAGTGGACCCCAACGGGCTGGACACTGAGGAGGGTCCTCGGATCGGAGTGTCATATATTTTCTCAACAGATGACGAGGAACAGGAGGGTGAAAACCGTAACATAGATGGAGCGGATAAGGAGCACCACACTGGTACGGAACATAAACACTGCGACAAGAGCAACGAGGTGGATTGCGCCGTTTACCACCGGGGGGATTGTATTTACGAGAAGAGCGTCAAGACCGCGGGTATGGAAACCTACTCCCCCGAGATCCTACTAAACAAATGCAGGGCAGGTGACCTGGTGGAGTTTGTAATCACGGGACAGTACCCTCACTGGGCGGTGTATGTCGGTGACTTCCAGGTGGTGCACCTGCACAGAGCAGAGATAAAGAACAGCTTCCTGACAGAGGCCAGCCAGGGAAGGAGATGTAGGATAGTCAACGAGCTGTATAAATTCAAAGCCCTCAGCGCCGAGATGGTGGTTCAGAACGCTATGGAACAGGTAGGAGCTAAAGACAGAGAGTTGAGCTGGAGAAATTCAGAGTGCTTTGCCGCTTGGTGCAGGTTTGGCAAACGGGAGTTCAAAATGGGCGGGGAGATCCGGATAGGAAAACAGCCATACAGGTTAAAGATCCTGATGTCAGATAAACATTCTCGCATGCTGGAGTTCCAGTGTTTAGAGGACTTGAtcatggagaagaggagaaacgACCAGGTGGGAAGGACATCAGTGGTCCAGGAGCTGGCCAATCATTTGAACAGTGTGGAAGAGATCAAAAGGAATCCACTCAGTGATCCAATAACAGCACAGACCGACCGCACAGTGATCTAATGGATTTATACACCTGCTATAAAGATCTCGATGGCTCTTGCCTATCCAATCACAGACCCCTATCTAAGTGGATTTACAAACACACATTTCATTATACATTTTGATGAATATAATCTAAATGGCTTGTTCATGTCTAGTTGTTATTTGATTGATGGAAGAACAATAGTTTTAAAGGTTATTGATTTATTCTCTGCCTAATGATGTTTCATAATGATTGATATGataatatattgtacatgttTTCGTGTCTCACCCAGGTAACCATCATACCTATAGCCCTAAGGTTATCTCATTCTGATGAAAACATGTTGCAGAGCATGGGTTGATCAAACATCGCTTATTGTACCGTACCAATAATTTAAGTCAAGTAAATTATCATTACAT

Function

NR:

description
protein FAM84B-like

GO: NA

KEGG:

id description
K22810 FAM84B; protein FAM84B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559728.2 True 1791 mRNA 0.45 1 1849460 1851250

Neighbor

gene id symbol gene type direction distance location
fam91a1 LOC106589122 coding upstream 24342 1711555 ~ 1825118 (+)
LOC110511936 spire1 coding upstream 209887 1600350 ~ 1639573 (+)
ncaldb LOC105006551 coding upstream 488162 1280933 ~ 1361298 (+)
LOC110487806 LOC106570773 coding upstream 887344 936322 ~ 962116 (+)
rims2b LOC106570772 coding upstream 949523 738621 ~ 899937 (+)
LOC118946536 NA coding downstream 41340 1892590 ~ 1893952 (+)
triqk triqk coding downstream 357769 2209019 ~ 2255119 (+)
cbfa2t2 runx1t1 coding downstream 673809 2525059 ~ 2686032 (+)
pip4p2 LOC106570754 coding downstream 915435 2766685 ~ 2800192 (+)
LOC110487823 LOC106570755 coding downstream 965226 2816476 ~ 2845566 (+)
G2288334 NA non-coding upstream 946 1843342 ~ 1848514 (+)
G2288336 NA non-coding upstream 1203 1846812 ~ 1848257 (+)
G2288335 NA non-coding upstream 4394 1843719 ~ 1845066 (+)
G2288283 NA non-coding upstream 20016 1788267 ~ 1829444 (+)
G2288293 NA non-coding upstream 65955 1782743 ~ 1783505 (+)
G2288340 NA non-coding downstream 6078 1857328 ~ 1878374 (+)
G2288344 NA non-coding downstream 12042 1863292 ~ 1867092 (+)
G2288446 NA non-coding downstream 46830 1898080 ~ 1898672 (+)
G2288452 NA non-coding downstream 54521 1905771 ~ 1906229 (+)
G2288489 NA non-coding downstream 94101 1945351 ~ 1954328 (+)
G2287973 NA other upstream 575290 1273374 ~ 1274170 (+)
G2287470 NA other upstream 1361799 486793 ~ 487661 (+)
rpl30 LOC106589133 other upstream 1608820 233676 ~ 240640 (+)
G2288669 NA other downstream 470624 2321874 ~ 2324182 (+)
G2288814 NA other downstream 529197 2380447 ~ 2381395 (+)
G2289325 NA other downstream 1209192 3060442 ~ 3060779 (+)
G2290395 NA other downstream 2597639 4448889 ~ 4449571 (+)

Expression


Co-expression Network