LOC110487826 (znf519)


Basic Information

Item Value
gene id LOC110487826
gene name znf519
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 2883928 ~ 2886784 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559742.2
CGCAAACGAGTAGCGGAAGTGGAAGATGCTGGTCGTTCATCTTCGAAATGCGGTCTACAGTTATTTTATATACATCAATGGGCACAACAAGGGAATAAAATCACATCACATTGAGCAGAAGAACAACTTAAAGCTATCGAATTTCATAacgttttaataaaaaaataaataaaatctcaaAATGTCTAAACTGGAGTTGTTCAACGCGTATCTCAGTGAACGGCTGACTGCGGCGGCGAGGGAGATAACATCGGCAGTAGAGAGAACGATAACAGACTATCAGGACGAAATCTCCCGTTACAAGGAGGACAACGAACGGTTACGACTGATGCTGGATTTCAAACCACATTTACACTTAGAACCCCAACAGCTCACCTTCACAGTCTCTAAAGAGGAGGTTCCCCCTGAGCAGCAGCACTGTGAACAAGAGTGTCCCCGTATGGGGCAGCAGGTCCCAGAGCCCACACAGATTAAAGATGAACAGGAGGAAGAGCTGCTTCAAGAGTCTGATACCAAAGACTTCATTACTGTCTGTGTTGTGAGTGACTGTGAGGGCGTGAACACACGTCATGCATCCCACACTGTGGGGAGTAGAGACGGAGGTTCGCCATTCAATAACACAACtggagggatacagacagagccCGGTGATGAAGACTATATAGACTACATAGTATCAGAACCATCCAGTCCTGCAGCTCAGAGTGAAAACAGTGGGAGGGACACCGATGGCGAGAGCATGGAGCTACCGCCGGGGTCAAAGCCACGGAAATCACAAAGAAAACAGGCGAAGAAAGGAACAAGCGTTGTTGAAGATGCTTCTCCTTATTGCTGCAAGCTGTGTGGGAGGACTTTTGTTCGTATGGGTTTTTTAGTTAACCATGTGCAAAGAACACACACAAAGCATGCTGAACAATACcgttgtggtgtgtgtgaaggAGTCTTGGACTCAAAAGAAAATCTGACAGTCCACGTGCAAACCCACACTAAAGAGAGAACTACTCCTCACTCTCAAACCCACACTAAAGAGAGAACTACTCCTCACTCTCAAACCCACACTGAATCAAAAGCTTGGCACAATGCTCACCCTCAAACCCTCACTGAACCAAAACCTTGGCCCGGTGCTCACCCTCAAATCTTCACTGACCCAAAACCTTGGCACAGTGCTCACCCTCAAACCCTCACTGAACCAAAACCTAGGCCCAGTGCTTACCCTCAAACCCTCACTGAACCAAAACCCAGGCCCAGTGCTCACCCTCAAACCCTCACTGAACCAAAACCTAGGCCTACTGCTCACCGGCAAACCCTCACTGAACCAAAACCTAGGCCTACTGCTCACCCTCAAACCCTCACTGAACCAAAACCTAGGCCTACTGCTCACCGGCAAACCTTCACTAAAGGGATGCCCACTCCTCAACTTCAACCTGCAGCCAAACCTACTTGTCATGTTTGTGGCAAGTGTTTCCCTTACAATCATAATCTGAAACTACACATGCGCACTCACACAGGCGAGAGACCGTTCAAATGCAGAGAATGTGGTAAATGCTTCCGATCTAAGGGATATATGAAGGTGCACTTGAGgattcacactggagagaaactaTTCCAATGCAAAGAATGTGACAAAGGCTTCCCTACCAAGCAATACCTGACCAAACACACGCTgttccacacaggggagaaatccTACCAGTGTAAGGACTGTGGGAAAGGCTTCGACCAGAGGGAACACCTTGAACAGCACCAGTCAACTCACACGGAGGAGAAGCCATATGGTTGCATAGAGTGTGGCAAATGCTTTAAAGACACTTACCATCTGGCCAGACATAAGCTGGTTCACACAGGGGAGAGACCTTTCACGTGCACTGTGTGTGGACGGGGCTTCAGCACCCAAGGCAACCTGAAAGTTCACCAGCGGATTCACACCGGAGAGAAACCCTATCGCTGTAAACTGTGTGGGAGATGCTTTACAGGTTTTGCTAGTCTTAAATATCACTTGAACACGATTCACCATTACGACGGTGGCCTTTAAATGACGTGTCTGTCAGAAGGTGACGAACCAGAAGAACATCATTACACCATTGTGGCTTTATAGTGTCTTTTTGGTGGCAGATGTAGAACAACCGTTAGGACATAGAATCTATGAAGGAATATATGGTATACTCTAACACCTTGATTAAGGTTCAACAATAGATGTGCAACTCATCTGACacaacagatatatatatatatatatatatatatatatatatatacgtacatACTACCttttaaaagtttggggtcatttagaaattctccagtttcttggc

Function

symbol description
znf519 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and chromatin binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to be located in nucleus.

NR:

description
oocyte zinc finger protein XlCOF6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559742.2 True 2312 mRNA 0.46 2 2883928 2886784

Neighbor

gene id symbol gene type direction distance location
LOC110487823 LOC106570755 coding upstream 38362 2816476 ~ 2845566 (+)
pip4p2 LOC106570754 coding upstream 83736 2766685 ~ 2800192 (+)
cbfa2t2 runx1t1 coding upstream 197896 2525059 ~ 2686032 (+)
triqk triqk coding upstream 628809 2209019 ~ 2255119 (+)
LOC118946536 NA coding upstream 989976 1892590 ~ 1893952 (+)
angpt2b LOC106570762 coding downstream 43360 2930144 ~ 2992088 (+)
LOC118946537 NA coding downstream 273434 3160218 ~ 3181800 (+)
pef1 pef1 coding downstream 2116194 5002978 ~ 5011804 (+)
smim12 smim12 coding downstream 2127765 5014549 ~ 5018314 (+)
dlgap3 dlgap3 coding downstream 2409025 5113201 ~ 5412625 (+)
G2289032 NA non-coding upstream 4785 2877793 ~ 2879143 (+)
G2289026 NA non-coding upstream 44210 2839117 ~ 2839718 (+)
G2289040 NA non-coding upstream 48508 2834779 ~ 2835420 (+)
G2289029 NA non-coding upstream 61775 2821890 ~ 2822153 (+)
G2289010 NA non-coding upstream 94700 2788802 ~ 2789228 (+)
G2289049 NA non-coding downstream 6863 2893647 ~ 2902038 (+)
G2289054 NA non-coding downstream 22203 2908987 ~ 2910020 (+)
G2289249 NA non-coding downstream 40797 2927581 ~ 2927929 (+)
G2289256 NA non-coding downstream 44374 2931158 ~ 2931368 (+)
G2289257 NA non-coding downstream 44593 2931377 ~ 2931593 (+)
G2288814 NA other upstream 502533 2380447 ~ 2381395 (+)
G2288669 NA other upstream 559746 2321874 ~ 2324182 (+)
G2287973 NA other upstream 1609758 1273374 ~ 1274170 (+)
G2287470 NA other upstream 2396267 486793 ~ 487661 (+)
G2289325 NA other downstream 173658 3060442 ~ 3060779 (+)
G2290395 NA other downstream 1562105 4448889 ~ 4449571 (+)
G2290455 NA other downstream 1660120 4546904 ~ 4548844 (+)

Expression


Co-expression Network