LOC118946537


Basic Information

Item Value
gene id LOC118946537
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 3160218 ~ 3181800 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971823.1
ATGATAATGTTCAGCTTAGAGGATAGTGTCAGCCTAGCCTGCACCAGTCCCATCAGCACTGCACCAGTCCCAGCAGCACTGCACCAGTCCCATCAGCACGGCACCAGTCCCATCAGCACTGCACCAGTCCCATCAGCACTGCACCAGCCCCATCAGCACTGCCTCAGTCCCATCAGCACTGCACCAGTCTCATCAGCACTGCACCAGTCCCAGCAGCACTGCACCAGTCCCATCAGCACGGCACCAGTCCCATCAGCACTGCACCAGTCCCAGCAGCACTGCACCAGCCCCATCAGCACTGCAGCAGCCCCATCAGCACTGCACCAGGCCCATCAGCACTGCACCAGCCCCATCAGCACTGCACCAGTCCCATCAGACCCTGAAGGACGTCACCCTCAACTGCAGGCCCAGCACCTCACACATGAGCAACAGAGCAACGGACACCCAGCCCTGACCAGCGAGACCccctcccagaccagcgagaccccATCCCAGGCCAGCGAGACCccctcccagaccagcgagaccccATCCTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971823.1 True 537 mRNA 0.62 3 3160218 3181800

Neighbor

gene id symbol gene type direction distance location
angpt2b LOC106570762 coding upstream 168130 2930144 ~ 2992088 (+)
LOC110487826 znf519 coding upstream 273434 2883928 ~ 2886784 (+)
LOC110487823 LOC106570755 coding upstream 314652 2816476 ~ 2845566 (+)
pip4p2 LOC106570754 coding upstream 360026 2766685 ~ 2800192 (+)
cbfa2t2 runx1t1 coding upstream 474186 2525059 ~ 2686032 (+)
pef1 pef1 coding downstream 1821178 5002978 ~ 5011804 (+)
smim12 smim12 coding downstream 1832749 5014549 ~ 5018314 (+)
dlgap3 dlgap3 coding downstream 2114009 5113201 ~ 5412625 (+)
LOC110513117 LOC106589108 coding downstream 2327201 5509001 ~ 5525069 (+)
LOC110489357 slc6a19 coding downstream 2410312 5592112 ~ 5615373 (+)
G2289332 NA non-coding upstream 26014 3133999 ~ 3134204 (+)
G2289311 NA non-coding upstream 146281 3013502 ~ 3013937 (+)
G2289297 NA non-coding upstream 164450 2995543 ~ 2995768 (+)
G2289274 NA non-coding upstream 170972 2989008 ~ 2989246 (+)
G2289273 NA non-coding upstream 171818 2988060 ~ 2988400 (+)
G2289390 NA non-coding downstream 15028 3196828 ~ 3197301 (+)
G2289392 NA non-coding downstream 15835 3197635 ~ 3197987 (+)
G2289431 NA non-coding downstream 63175 3244975 ~ 3249937 (+)
G2289433 NA non-coding downstream 70140 3251940 ~ 3252205 (+)
G2289436 NA non-coding downstream 92883 3274683 ~ 3275184 (+)
G2289325 NA other upstream 99439 3060442 ~ 3060779 (+)
G2288814 NA other upstream 778823 2380447 ~ 2381395 (+)
G2288669 NA other upstream 836036 2321874 ~ 2324182 (+)
triqk triqk other upstream 905145 2209019 ~ 2255119 (+)
G2287973 NA other upstream 1886048 1273374 ~ 1274170 (+)
G2290395 NA other downstream 1267089 4448889 ~ 4449571 (+)
G2290455 NA other downstream 1365104 4546904 ~ 4548844 (+)
G2291194 NA other downstream 2235032 5416832 ~ 5418238 (+)

Expression


Co-expression Network