pef1 (pef1)


Basic Information

Item Value
gene id pef1
gene name pef1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 5002978 ~ 5011804 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559746.2
ATCACCCCCCATAGACGAACgcgtcagcgtgcatgcgcccggcctgccacaggagtcactagaaagcgacgggacaaggacatcccgtcCGGCTAAACCGTCCCGCTGGGGCAATTGTGTGTCACCTCATCGGTCTCTTGATTTGATtcgatACGCGTTGGACGTGGGTGTGGTTTTGACTGACAAGCCAAATGCGCCAATCCGCTTCGAGAAGGTGGTTGACTGTATTCTGTGCGGATACGTGGGTATCGAAGTTCTTTTCGAAATGAGTTTCCACTACGGCCAGGGTTATCCAGGAGGACAAGCTGGAGGGGCTAACTTCCCCCGTCAACACCCACCCCCTGGTGCTCCGTATGGGGGTAGTGCTCCACCTGGTGGCCCCTCTCCCCACGGATCTCCATACGGGGGTAGTGCTCCACCAGGACAGTATGGAGGCTCTGGCCCATCGGGCTACGCCCCGTACGGGGGAGCGACCGCCCCTCCAGGGAGTCAAAATGCTGGAGGGGCTGCACCAGGAGGGCCCTACGGGGGCTATGGGGCCCCAGGACAGGGGAGGCAGGCTGGGGGAGCACCAGGGGCCCCATACGGAGGGGGGCAGACCCCTGGAGGGCCCTATGTTGGGGGGTATGGAGGACAGCCACAGGGAGGGCCCTATGGACAGCAGTCTTCAGCAGgTAACATACCACCAGGGGTGAACCCAGAAGCATACCAGTGGTTCCAGACAGTGGACACCGATCATAGCGGCTCCATCACTCTAAAGGAACTGAAACAGGCTCTGGTCAACTCCAACTGGTCAGCCTTTAACGACGAGACCTGCCTTATGATGATCAACATGTTTGACAAGACCAAGTCTGGCCGTATCGACCTGTTTGGGTTCTCAGCCCTGTGGGTCTTCATGCAACAGTGGAGACAGCTGTTCCAACAGTACGACCGCGACCGCTCCGGCTGCATCAGTGGCACTGAGCTACACCAAGccctgtCCCAGATGGGATATAACCTGAGTCCCCAGTTCACTGAGACGATAGCGGCTAAGTACGCTGTGAGCTCTGGGCGTCCTGGTTCCCTGCAGCTAGACTCGTTCATCCAGGTGTGTACACAGCTACAGAGCATGACGCAGGCCTTCAGGGAGAAGGACTCCGCCATGACAGGAAACATACGCATGAGCTACGAAGACTTCCTCTCCACCACCGTCAACAGGCTCATGTGAGAGGGACAGATGGTGATGTTCACCTCCCAGTGGTGGCTGGTGACATTTTACATGGGGTGGGCACAGGCTTTTATAGTATCATCTTTTTGATTTACTCCATTCCAGTTGTTATTTTGAGCTGTCCTCCCTTCACCAGCCTCCGGTGCCAGCCACCAATAATAGGCAAAAAGGGTCCACCTAAAGCCAACACCCTGAAATCAAGATGGAGGACAAATGAGTCAAACTGAGGATGAGGAAATGGAGGAGactaggggagaggaggagatacaattaatcactctcttcgtctctctgtgtgtgtgtgtgtgtatcacacaCAAGGGTATggagtcatatatatatatatatatatatatatatattcctactGCAGACCTGCTCACAAGCATCCTTAATATGTCAACTCCAGGACTTGATTTGCATGATGGAACTTGATGTGCCATTTTAACCTCATGTGTAGTGTCAATCTCATAGGGCCAGTTTCCTGAACCAAGATTAAGCCTCATCCTGGACTACAAAGCATTTTCAGTACAGATTCCCAATTGccaatgctttttagtccagggcGAACTCTTAATCTTGGTCTAGGAAACCGGCTCAAAGTATAGCTGGGTATCAGTTACATTGCATGTATGACACTCGGTACACCCGAATAATGCGCCAGAGCCAATTTTTTAATAATTTTGACAACATAGCTTTACTCCAAACCACTACCGTATCTGCTGGTAGCTGTGATGGTTATGACTGTTGATGATCACCGTTGCACATTGTCGCACAGTTATATTTCAGCCATTGGATAGTTCAGGACCAATCTGTCtttgaattataattttttttaaattaaatgtattgtttactgCCATAACTTGAAATTGTATTCTAATAAAGTTTTCAAAACttgaaa

Function

symbol description
pef1 Predicted to enable ubiquitin ligase-substrate adaptor activity. Predicted to be involved in COPII vesicle coating; mesenchymal cell differentiation; and positive regulation of protein monoubiquitination. Predicted to be located in cytoplasmic vesicle; endoplasmic reticulum; and membrane. Predicted to be part of COPII vesicle coat and Cul3-RING ubiquitin ligase complex. Orthologous to human PEF1 (penta-EF-hand domain containing 1).

NR:

description
LOW QUALITY PROTEIN: peflin

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23905 PEF1; peflin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559746.2 True 2111 mRNA 0.51 6 5002978 5011804

Neighbor

gene id symbol gene type direction distance location
LOC118946537 NA coding upstream 1821178 3160218 ~ 3181800 (+)
angpt2b LOC106570762 coding upstream 2010890 2930144 ~ 2992088 (+)
LOC110487826 znf519 coding upstream 2116194 2883928 ~ 2886784 (+)
LOC110487823 LOC106570755 coding upstream 2157412 2816476 ~ 2845566 (+)
pip4p2 LOC106570754 coding upstream 2202786 2766685 ~ 2800192 (+)
smim12 smim12 coding downstream 2745 5014549 ~ 5018314 (+)
dlgap3 dlgap3 coding downstream 284005 5113201 ~ 5412625 (+)
LOC110513117 LOC106589108 coding downstream 497197 5509001 ~ 5525069 (+)
LOC110489357 slc6a19 coding downstream 580308 5592112 ~ 5615373 (+)
slc6a18 LOC106570711 coding downstream 620493 5632297 ~ 5641547 (+)
G2290848 NA non-coding upstream 9165 4993498 ~ 4993813 (+)
G2290838 NA non-coding upstream 16010 4986717 ~ 4986968 (+)
G2290831 NA non-coding upstream 42335 4960395 ~ 4960643 (+)
G2290821 NA non-coding upstream 49777 4952998 ~ 4953201 (+)
G2290812 NA non-coding upstream 55579 4945654 ~ 4947399 (+)
G2290867 NA non-coding downstream 420 5012224 ~ 5012658 (+)
G2290872 NA non-coding downstream 1631 5013435 ~ 5013733 (+)
G2290933 NA non-coding downstream 73032 5084836 ~ 5085092 (+)
G2290938 NA non-coding downstream 83168 5094972 ~ 5095182 (+)
G2290955 NA non-coding downstream 97767 5109571 ~ 5109858 (+)
G2290455 NA other upstream 454134 4546904 ~ 4548844 (+)
G2290395 NA other upstream 553407 4448889 ~ 4449571 (+)
G2289325 NA other upstream 1942199 3060442 ~ 3060779 (+)
G2288814 NA other upstream 2621583 2380447 ~ 2381395 (+)
G2288669 NA other upstream 2678796 2321874 ~ 2324182 (+)
G2291194 NA other downstream 405028 5416832 ~ 5418238 (+)
G2291219 NA other downstream 459759 5471563 ~ 5472153 (+)
wipf3 NA other downstream 712520 5724270 ~ 5749736 (+)

Expression


Co-expression Network