smim12 (smim12)


Basic Information

Item Value
gene id smim12
gene name smim12
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 5014549 ~ 5018314 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971384.1
GAATGACGTCCTAGCTCAAAGGAACGCACAAGTGATAGCGATCTAAGGATTGGATATGAGGTTCCCGTGTAGAGCCAATCACAATCATTTGGAGGCGCGGTTATCAAGCCATACGGAAGTTACTGCGCATTCCACGTTTTCGAAGtgaGCCAGCCCCAGTTAGGTCCAGTCATTATGTGGCCAGTGTTATGGATGTCCATGCGTACCTACGCCCCCTACATAACCTTCCCGGTGGCCTTCGTGGTGGGGGCGGTGGGGTACCACCTGGAGTGGTTCATCAGGGGGGACACCACCCTTAAACCTGGGGAGGAGAAGAGCATCGTGGAGCTGAGGGAGGATAGGAAGCTGGAGGAGGGGGCAGGACGGGACAGCACCCAGGTCCTCAGTCTCAAAGAGAAGCTGGAGTTTACCCCCAGGGCAGCGTTGGACCGCAACCGACCCGAGAAGAGCTAACCGTGCCTGGGGTTTAGGCTGACTGGTGTCCATCACTCCTAGTCCTGGATCAAGGGGTGAAGGGAGTGGAATGATGGATATAAACCCTGGTTTCCTGATGCTATGTAATGGCCAATGAGAGGCGTTGAAGCCACTGGTCGGCCATATTGGTACTCCCCAGAAGAAGCAGTCCTCTATAGGAGTGAATTCTGCAGTATTTCAATGACATTTTTCAAGGAGAaaattaaatgttttaaagtattttgttgttgtagtggggacagtaactttAGAACTTTCCAAAAAAATTATACTTTAagaaaattatattatttttttattttgtttagttCACATCATTTGAGAGTggattaaggtgtctgtaatggAATACACGTGACGAAAACAAAGGGGATCACAATAAAGGCATTTCTATAGCAACCAAAAATATTTTCTACAATGGTGGAGAAACAgtgccccctgtcagtcatctaggGTGTGTGTAAATCTATCATTGGTGTTGAAGGTGCTTACCAAAGGGGATCGGAGTCATCTTCTCCTCAACATACACACTCCAGCCAATCGTTGTCACTCGTATGCCCAAAAGCACTGGCATCATACTGTACTTGAACATCATTGGCTTGGGCACCTGTGGTGGCACTGTTCTGTTTGAGACTGGAGGATCATGGGAAATGGAGTCTTTTGTTTTAGGGTGCTGAATATCCACGAACCTCATTAATGATTTATgattctctcgctgtctctcatatgtatacacccacacacaaataTAGGCTACTGGTTATTCAATTTTCATACTTGTGATCATGTCCACCACATAAACCATTGGAGAATGTTGGTCTGTATTTTCAAAGTTTAGTAAATAAGTTTAGTATATAAATCCCTGGGCACTCAATCTGATGACTACCGCTGGGGTAACTCCTGATAAGGCATCGCTCTCTTCTGCTCCTCAGATGCTGATGAAAGAACAAAGAACCCTTATTGTCTGCGTGTGCGTGAGAGACTTTCAATGTGTCTTCATATTTTAAAATATCATGAAAGAGAAGACCGCGTCATAAAATGACTGAATTAAATTTGAATGAACCCGAGTGCCGATGTAGAATAACACAGAAGGGATGAAGAAAGA
>TU2619856
GCCATACGGAAGTTACTGCGCATTCCACGTTTTCGAAGtgaGCCAGCCCCAGTTAGGTCCAGTCATTATGTGGCCAGTGTTATGGATGTCCATGCGTACCTACGCCCCCTACATAACCTTCCCGGTGGCCTTCGTGGTGGGGGCGGTGGGGTACCACCTGGAGTGGTTCATCAGGGGGGACACCACCCTTAAACCTGGGGAGGAGAAGAGCATCGTGGAGCTGAGGGAGGATAGGAAGCTGGAGGAGGGGGCAGGACGGGACAGCACCCAGGTCCTCAGTCTCAAAGAGAAGCTGGAGTTTACCCCCAGGGCAGCGTTGGACCGCAACCGACCCGAGAAGAGCTAACCGTGCCTGGGGTTTAGGCTGACTGGTGTCCATCACTCCTAGTCCTGGATCAAGGGGTGAAGGGAGTGGAATGATGGATATAAACCCTGGTTTCCTGATGCTATGTAATGGCCAATGAGAGGCGTTGAAGCCACTGGTCGGCCATATTGGTACTCCCCAGAAGAAGCAGTCCTCTATAGGAGTGAATTCTGCAGTATTTCAATGACATTTTTCAAGGAGAaaattaaatgttttaaagtattttgttgttgtagtggggacagtaactttAGAACTTTCCAAAAAAATTATACTTTAagaaaattatattatttttttattttgtttagttCACATCATTTGAGAGTggattaaggtgtctgtaatggAATACACGTGACGAAAACAAAGGGGATCACAATAAAGGCATTTCTATAGCAACCAAAAATATTTTCTACAATGGTGGAGAAACAgtgccccctgtcagtcatctaggGTGTGTGTAAATCTATCATTGGTGTTGAAGGTGCTTACCAAAGGGGATCGGAGTCATCTTCTCCTCAACATACACACTCCAGCCAATCGTTGTCACTCGTATGCCCAAAAGCACTGGCATCATACTGTACTTGAACATCATTGGCTTGGGCACCTGTGGTGGCACTGTTCTGTTTGAGACTGGAGGATCATGGGAAATGGAGTCTTTTGTTTTAGGGTGCTGAATATCCACGAACCTCATTAATGATTTATgattctctcgctgtctctcatatgtatacacccacacacaaataTAGGCTACTGGTTATTCAATTTTCATACTTGTGATCATGTCCACCACATAAACCATTGGAGAATGTTGGTCTGTATTTTCAAAGTTTAGTAAATAAGTTTAGTATATAAATCCCTGGGCACTCAATCTGATGACTACCGCTGGGGTAACTCCTGATAAGGCATCGCTCTCTTCTGCTCCTCAGATGCTGATGAAAGAACAAAGAACCCTTATTGTCTGCGTGTGCGTGAGAGACTTTCAATGTGTCTTCATATTTTAAAATATCATGAAAGAGAAGACCGCGTCATAAAATGACTGAATTAAATTTGAATGAACCCGAGTGCCGATGTAGAATAACACAGAAGGGATGAAGAAAGAGAACAAGCTGCTCCTTTCATCCTCCTCCGTTCTccagaaataaaaataataataaaatgcgTTCCAGTCGGCAAGCATGACGAAGGGAGGAGTGTTTGCTCTCATCTGGTCGTTTAACCTCGTTATTTTGACTTTTTCTCCCTCTTCTGTTACTTGGATTCAATAGCGAGAAAGACTAAAAGTCTCTATTAGAGAACTCAAACGGGTATTTTTCCTGTCTTTTCATTTACCTGGTATGCTTTCATTTCGAAAGTCTGTGAAGGTTCACTGGTTCATGTGTTTCATGGATTAAGATATTATATTTAAGGATTTGGATGGGAAGATACAAAACGTGACAGTCTTCGTCGCGTATGACCGaccgaccgc

Function

symbol description
smim12 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SMIM12 (small integral membrane protein 12).

NR:

description
small integral membrane protein 12

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971384.1 False 1579 mRNA 0.45 2 5014549 5017948
TU2619856 True 1838 TUCP 0.44 2 5014656 5018314

Neighbor

gene id symbol gene type direction distance location
pef1 pef1 coding upstream 2745 5002978 ~ 5011804 (+)
LOC118946537 NA coding upstream 1832749 3160218 ~ 3181800 (+)
angpt2b LOC106570762 coding upstream 2022461 2930144 ~ 2992088 (+)
LOC110487826 znf519 coding upstream 2127765 2883928 ~ 2886784 (+)
LOC110487823 LOC106570755 coding upstream 2168983 2816476 ~ 2845566 (+)
dlgap3 dlgap3 coding downstream 277861 5113201 ~ 5412625 (+)
LOC110513117 LOC106589108 coding downstream 491053 5509001 ~ 5525069 (+)
LOC110489357 slc6a19 coding downstream 574164 5592112 ~ 5615373 (+)
slc6a18 LOC106570711 coding downstream 614349 5632297 ~ 5641547 (+)
LOC110489437 LOC106570711 coding downstream 627235 5645183 ~ 5677904 (+)
G2290872 NA non-coding upstream 816 5013435 ~ 5013733 (+)
G2290867 NA non-coding upstream 1891 5012224 ~ 5012658 (+)
G2290848 NA non-coding upstream 20736 4993498 ~ 4993813 (+)
G2290838 NA non-coding upstream 27581 4986717 ~ 4986968 (+)
G2290831 NA non-coding upstream 53906 4960395 ~ 4960643 (+)
G2290933 NA non-coding downstream 66888 5084836 ~ 5085092 (+)
G2290938 NA non-coding downstream 77024 5094972 ~ 5095182 (+)
G2290955 NA non-coding downstream 91623 5109571 ~ 5109858 (+)
G2290967 NA non-coding downstream 102598 5120546 ~ 5120936 (+)
G2290455 NA other upstream 465705 4546904 ~ 4548844 (+)
G2290395 NA other upstream 564978 4448889 ~ 4449571 (+)
G2289325 NA other upstream 1953770 3060442 ~ 3060779 (+)
G2288814 NA other upstream 2633154 2380447 ~ 2381395 (+)
G2288669 NA other upstream 2690367 2321874 ~ 2324182 (+)
G2291194 NA other downstream 398884 5416832 ~ 5418238 (+)
G2291219 NA other downstream 453615 5471563 ~ 5472153 (+)
wipf3 NA other downstream 706376 5724270 ~ 5749736 (+)
G2291490 NA other downstream 1129876 6147824 ~ 6148246 (+)

Expression


Co-expression Network