LOC110513117 (LOC106589108)


Basic Information

Item Value
gene id LOC110513117
gene name LOC106589108
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 5509001 ~ 5525069 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971692.1
gaacagagggacagaggaagagagggacagagggacagaggaacagagggacagagggacagaggaacagagggacagagggacagagggacagagggaagagagataaaGGAAAAGAACACGTTAATTGAGAAATACCGGAGAAATTCACATTCCCAGACGACACGAAGACGGAGGGGGAAATACTATTGTTCAAAGAGGTctagaacaagagaaagagagagagagagacagagagagagtgagagagagagactgagagagagagagagagagagacagagagagagtgagagagagagagagactgagagagagagagagagagagagagagagagagagagagagagacagagagagagagaggggaacagcgTCCCATTGACTCCACAGGGTACACATTCTCTACTGCGTCAGCAGAACAGAAGGAGTGATCCTCCACACACTTCTCCTTtcatccaaccatccatccatctgtctgtctgtccatctagtgAAGAATAGGAGGAGAGATGAAGACATCTCATAATGACTATAGTTCTCCAGACTCTGATGACATGGACGGGCTGATCGATGTGGGACAGGAAGACGGCTCCTGTCCAGTCACTGGGTCCATGTCCCCAGGTAGCACGTCCCAGATTCTGGCccggaagaagagaagagggATTATAGAGAAGAGGCGCAGAGACAGGATCAACCACAGTCTATCAGAGCTTCGGAGACTGGTGCCCAGCGCCTTGGAGAAACAGGGCTCGTCTAAGCTGGAGAAAGCAGAGATTCTGCAGATGACGGTGGACCACCTTAAGCTGCTGCATGCCATGGGGGGCAAAGggtaCTTTGAAGCGCGGGTCCTGGCTGTGGACTATAGGACCCTGGGATTCAGACAGTGTGTAGGAGAGGTGGTTCGGTACCTGGGCTCTTTAGAAGGAGGGGTGGACTCCCCGGACCCTATCGGAGCCCGCCTGGTCTCCCACCTCTCCCACTGCGCCAGCCAGCTGGACCCCCTTCTCCTTCAGTCGCCCCCCACCTCCTCCGCCCTCCCTTTTCCTCCCTGGCCGTGGATCTCCTCCTATCACCAGATGTCACCTGTCTCGTCTCCcacctctccatctttctccgcGAGGCGGAGGGAGCTGGCACGCCTGGGGGGTGGGTGTTATCCATCCCGCTCAGCCGACACCCTGTGTCTCGCCCCCCTGGGGTGCCAACAGGGGTCCATGCTCGCCCCTGCCTTGGTGTCTGGGCTTCGCAGGGTgccctctctcccaccaccttCCTCCCCTGCCCTCACCGCCACCCCCACTCACAGACTCACTCAGCAGTCCCCTGGAGCCtcactcctcctcacctcctcttcctcctcctttcccaCGGCTCCTCCACAAGTCAGACCCTTTGTCCCTCTGGGGTCTCCCGCGGGTCAGCGCAGGGGCAAAGCTGCAAAGACCTGGGGGACTGAGATAGGAGCCTTCTGATCCAGAACCTGTCAACACGATGCACTGTGTAAAGTTTGCTCTTAaccacagatctgggatcagattACCCAACCATTAACCCAGTGGAGGCTgcagaggggaggacggctcataataatatctggaacggagcaaatggaacggtatcaaacacatggaaaccatctctctgtctctgtctctctctctct
>XM_036971693.1
gaacagagggacagaggaagagagggacagagggacagaggaacagagggacagagggacagaggaacagagggacagagggacagagggacagagggaagagagataaaGGAAAAGAACACGTTAATTGAGAAATACCGGAGAAATTCACATTCCCAGACGACACGAAGACGGAGGGGGAAATACTATTGTTCAAAGAGtgAAGAATAGGAGGAGAGATGAAGACATCTCATAATGACTATAGTTCTCCAGACTCTGATGACATGGACGGGCTGATCGATGTGGGACAGGAAGACGGCTCCTGTCCAGTCACTGGGTCCATGTCCCCAGGTAGCACGTCCCAGATTCTGGCccggaagaagagaagagggATTATAGAGAAGAGGCGCAGAGACAGGATCAACCACAGTCTATCAGAGCTTCGGAGACTGGTGCCCAGCGCCTTGGAGAAACAGGGCTCGTCTAAGCTGGAGAAAGCAGAGATTCTGCAGATGACGGTGGACCACCTTAAGCTGCTGCATGCCATGGGGGGCAAAGggtaCTTTGAAGCGCGGGTCCTGGCTGTGGACTATAGGACCCTGGGATTCAGACAGTGTGTAGGAGAGGTGGTTCGGTACCTGGGCTCTTTAGAAGGAGGGGTGGACTCCCCGGACCCTATCGGAGCCCGCCTGGTCTCCCACCTCTCCCACTGCGCCAGCCAGCTGGACCCCCTTCTCCTTCAGTCGCCCCCCACCTCCTCCGCCCTCCCTTTTCCTCCCTGGCCGTGGATCTCCTCCTATCACCAGATGTCACCTGTCTCGTCTCCcacctctccatctttctccgcGAGGCGGAGGGAGCTGGCACGCCTGGGGGGTGGGTGTTATCCATCCCGCTCAGCCGACACCCTGTGTCTCGCCCCCCTGGGGTGCCAACAGGGGTCCATGCTCGCCCCTGCCTTGGTGTCTGGGCTTCGCAGGGTgccctctctcccaccaccttCCTCCCCTGCCCTCACCGCCACCCCCACTCACAGACTCACTCAGCAGTCCCCTGGAGCCtcactcctcctcacctcctcttcctcctcctttcccaCGGCTCCTCCACAAGTCAGACCCTTTGTCCCTCTGGGGTCTCCCGCGGGTCAGCGCAGGGGCAAAGCTGCAAAGACCTGGGGGACTGAGATAGGAGCCTTCTGATCCAGAACCTGTCAACACGATGCACTGTGTAAAGTTTGCTCTTAaccacagatctgggatcagattACCCAACCATTAACCCAGTGGAGGCTgcagaggggaggacggctcataataatatctggaacggagcaaatggaacggtatcaaacacatggaaaccatctctctgtctctgtctctctctctct

Function

NR:

description
hairy/enhancer-of-split related with YRPW motif-like protein isoform X1

GO:

id name namespace
GO:0009987 cellular process biological_process

KEGG:

id description
K09091 HEY; hairy and enhancer of split related with YRPW motif

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971692.1 False 1668 mRNA 0.56 5 5509001 5525069
XM_036971693.1 True 1372 mRNA 0.57 6 5509001 5525069

Neighbor

gene id symbol gene type direction distance location
dlgap3 dlgap3 coding upstream 96376 5113201 ~ 5412625 (+)
smim12 smim12 coding upstream 491053 5014549 ~ 5018314 (+)
pef1 pef1 coding upstream 497197 5002978 ~ 5011804 (+)
LOC118946537 NA coding upstream 2327201 3160218 ~ 3181800 (+)
angpt2b LOC106570762 coding upstream 2516913 2930144 ~ 2992088 (+)
LOC110489357 slc6a19 coding downstream 67043 5592112 ~ 5615373 (+)
slc6a18 LOC106570711 coding downstream 107228 5632297 ~ 5641547 (+)
LOC110489437 LOC106570711 coding downstream 120114 5645183 ~ 5677904 (+)
wipf3 NA coding downstream 199201 5724270 ~ 5749736 (+)
LOC110489352 LOC106570724 coding downstream 294011 5819080 ~ 5856740 (+)
G2291218 NA non-coding upstream 37487 5470463 ~ 5471514 (+)
G2291213 LOC106570718 non-coding upstream 42697 5452653 ~ 5466304 (+)
G2291215 NA non-coding upstream 46700 5461741 ~ 5462301 (+)
G2291194 NA non-coding upstream 90763 5416832 ~ 5418238 (+)
G2291192 NA non-coding upstream 92239 5416176 ~ 5416762 (+)
G2291206 NA non-coding downstream 10288 5535357 ~ 5535923 (+)
G2291247 NA non-coding downstream 13714 5538783 ~ 5544500 (+)
G2291250 NA non-coding downstream 20911 5545980 ~ 5546898 (+)
G2291252 NA non-coding downstream 26108 5551177 ~ 5551427 (+)
G2291258 NA non-coding downstream 31898 5556967 ~ 5557302 (+)
G2291219 NA other upstream 36848 5471563 ~ 5472153 (+)
G2290455 NA other upstream 960157 4546904 ~ 4548844 (+)
G2291490 NA other downstream 622755 6147824 ~ 6148246 (+)
G2291498 NA other downstream 636009 6161078 ~ 6161719 (+)
G2291541 NA other downstream 783067 6308136 ~ 6316697 (+)
G2292347 NA other downstream 1357308 6882377 ~ 6883166 (+)

Expression


Co-expression Network