LOC110489357 (slc6a19)


Basic Information

Item Value
gene id LOC110489357
gene name slc6a19
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 5592112 ~ 5615373 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971451.1
ACAGGGTGACTGAGAGAGAATAAGAGGGCAGAGAACTGTGCTAACATCCGACATCTAACCAACAGAACCACTCAGCTCTTTCAGCCGGACAAATAACAgCCTGCCAGCCGGCCACCATGAGATTCCCCAAGCTCCCCAACCCAGGTCTGGATGACCGGATCCCGTCCCACCAGGAGCTGGAAAGGATGGAGAAAGAGGAGGCTGGGGACAGGCCCAAATGGGACAACAAGACCCAATACATGCTGACCTGTGTGGGCTTCTGTGTGGGGCTGGGGAACGTGTGGAGGTTCCCTTACCTGTGTCAGAGCCATGGAGGAGGAGCGTTTATGATCCCGTTCCTGATCCTGCTGGTTCTGGAGGGGATTCCACTGCTGCACCTGGAGTTTGCCATCGGACAGCGCCTCAGGAGTGGCAGTGTGGGAGTGTGGACGGCCATTAACCCATATCTGACTGGCGTTGGCATCGCTTCCTTGTTAGTCTCCTTCCTGGTGGGTATGTACTACAACACTATAATCGCCTGGGTGATGTGGTACTTCTTCAACTCCTTCCAGAACCCTCTGCCATGGAGTCAGTGTCCTGTCAATGCCAACCTGACAGATTTGGTCTCAGAATGTGCCCGGAGTTCCCCAGTGGATTATTTCTGGTACAGAGACACACTCAACACGTCCACATCCATTGGGGACTCTGGAGGACTGCAGTGGTGGATGGTGTTGTGTCTACTGTGTGCCTGGCTGCTGTTGTACGTCTGCTGCCTTCGTGGCATTGAGACCACTGGCAAGGCAGTGTACGTAACATCCACTCTGCCATACGTGGTCCTCACCATCTTCCTGATCAGAGGACTGACTCTCAAAGGTTCTCTGGATGGAATCAAGTTCCTCTTCACGCCCGATCTAAATGAGTTGATGAACCCGTCTACCTGGCTGGATGCAGGTGCCCAGGTGTTCTACTCTTTCTCCTTGGCCTTTGGAGGTCTCATCTCCTTCTCCAGCTACAACTCTGTACACAACAACTGTGAGCAGGATGCCGTGATCATCTCCATCATCAATGGCTTCACATCCGTCTACGCTGCTACAGTCATCTACTCCATCATAGGTTTCAGGGCCACAGAGAGGTTCGACGACTGTCTGGAAGGAAATATCTTGGCCCTGCTGAATGCTTTCAACCTTGCTGAGGGCAACATCACAGAAGGCAACTATGCAGAATCCCTACAGAATCTAAATGGCACCTTCCCAGAGACCATCCAGAGTCTGGACCTCAAAACCTGCGACTTGCAGACTTTCCTCAGTCAGGGTGTGGAGGGAACTGGTCTGGCCTTTATCGTGTTCACCGAGGCCATCACCAAGATgcctatctctcctctctggtccatCCTGTTCTTCATCATGCTCTTCTGTCTGGGACTGTCCACCATGTTTGGCAGCATAGAAGGAACGGTGGTGCCCCTTCAGGATCTCAACATCTTCCCTAAACGGTGGCCTAAGGAGGCGATCACTGGTATTGTCTGTCTGGTGTCATTCGTCATTGCCCTGATATTTGCTCAGAGTTCTGGTAACTACTGGCTGGCTCTGTTCGACAGCTTTGCCGGCTCCATCCCTCTCCTAGTCATCGCCTTCTGTGAGATGATAGCTGTGGTCTACATCTATGGCATAGACAGGTTTAACAAGGACATAGAGTTCATGATTGGTCACAAGCCCAACCTGTTCTGGCAGGTGACCTGGAGGTTCGTCAGCCCTTTAATCGTTTTAGTAATCTTCGTCTTCTACTTCGTCACCAAAGTCAGCTCCAACGTCACCTACATCGCCTGGAATCCAAGCTCGGAGGACTTCCCCACTCTGGAGGTGTTGGAGTATCCTGCTTGGATTTACGTCATCATCTTTATCCTGGCAGGAATCCCCAGTCTGGTGGTGCCAGGCACGGCCATATTCAAACTCATGCGGAGATGTTGCAGCAACAGAAATGTCTACGGGGCAGAAGTCGACACGGTCTCTGCCAAAGTTCAGATGTTCACTACGAAAATGTCGTAGAATTACCACACAGCCAACATCATATGGGACAACGCTACACTGGAGAATGAAACAAGTAGAGTAAACATCCAAAATGATTGGTCccccaa

Function

symbol description
slc6a19 Enables neutral amino acid transmembrane transporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to act upstream of or within neutral amino acid transport. Located in apical plasma membrane. Part of brush border membrane. Implicated in Hartnup disease and iminoglycinuria.

NR:

description
sodium-dependent neutral amino acid transporter B0AT1

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG:

id description
K05334 SLC6A19; solute carrier family 6 (neurotransmitter transporter) member 19

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971451.1 True 2113 mRNA 0.52 13 5592112 5615373

Neighbor

gene id symbol gene type direction distance location
LOC110513117 LOC106589108 coding upstream 67043 5509001 ~ 5525069 (+)
dlgap3 dlgap3 coding upstream 179487 5113201 ~ 5412625 (+)
smim12 smim12 coding upstream 574164 5014549 ~ 5018314 (+)
pef1 pef1 coding upstream 580308 5002978 ~ 5011804 (+)
LOC118946537 NA coding upstream 2410312 3160218 ~ 3181800 (+)
slc6a18 LOC106570711 coding downstream 16924 5632297 ~ 5641547 (+)
LOC110489437 LOC106570711 coding downstream 29810 5645183 ~ 5677904 (+)
wipf3 NA coding downstream 108897 5724270 ~ 5749736 (+)
LOC110489352 LOC106570724 coding downstream 203707 5819080 ~ 5856740 (+)
LOC110520219 NA coding downstream 431217 6046590 ~ 6047475 (+)
G2291266 NA non-coding upstream 24449 5567298 ~ 5567663 (+)
G2291265 NA non-coding upstream 24818 5566974 ~ 5567294 (+)
G2291263 NA non-coding upstream 28509 5563330 ~ 5563603 (+)
G2291258 NA non-coding upstream 34810 5556967 ~ 5557302 (+)
G2291252 NA non-coding upstream 40685 5551177 ~ 5551427 (+)
G2291286 NA non-coding downstream 13255 5628628 ~ 5629225 (+)
G2291311 NA non-coding downstream 82147 5697520 ~ 5697778 (+)
G2291312 NA non-coding downstream 83563 5698936 ~ 5699674 (+)
G2291313 NA non-coding downstream 84640 5700013 ~ 5700617 (+)
G2291321 NA non-coding downstream 104434 5719807 ~ 5720039 (+)
G2291219 NA other upstream 119959 5471563 ~ 5472153 (+)
G2291194 NA other upstream 173874 5416832 ~ 5418238 (+)
G2290455 NA other upstream 1043268 4546904 ~ 4548844 (+)
G2291490 NA other downstream 532451 6147824 ~ 6148246 (+)
G2291498 NA other downstream 545705 6161078 ~ 6161719 (+)
G2291541 NA other downstream 692763 6308136 ~ 6316697 (+)
G2292347 NA other downstream 1267004 6882377 ~ 6883166 (+)

Expression


Co-expression Network