slc6a18 (LOC106570711)


Basic Information

Item Value
gene id slc6a18
gene name LOC106570711
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 5632297 ~ 5641547 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021562074.2
ACAAATGTGACATCCCTGATACTGGCTCTTACATCTGAGGGAagcatcagacagacagataagtcAATCCACCGAGGTAAATCAAGGAGAAGATCATAGCACTGGATAGTGCAGGATAGGATACCATTGAAGGACCTTCACAGCAACCTGCAATGAGACAGAGAAGCGATTCAGATGACCACATTAAAGAGCCACACTGAAGCAGCATCAAACCTGAGAGTGGATTACAGATCAAACACTGGAGTAAAGATACCAACACGCAACCAGTGAATTTCAAGTGGACAACAGAATAGCTGTGTTCCCTCTACAGAATAAGCGTTGGTTCAGAGTGCTAGAACCTCGGGCTAAAACACACTGGACTAAACTGAAAACCAGAAGGTTGATCTACTACTGAGCTAAAAACTACTGTTGAGATCTGAGCATGCCAGAGGAAGGTATGGAGGACAgcaaggggggagaggagagacccaAGTGGAACAACAAGGCAGAGTACCTGCTGACCTGCATTGGCTTCGCAGTGGGGCTGGGCAACGTGTGGCGCTTCCCCTACCTCTGCCAGATTTACGGAGGGGGTGCGTTTCTGATCCCCTACCTGATCGCCCTGGTGTTTCAGGGTCTGCCTCTGCTCTACTTGGAGCTGGCTATAGGACAGAGGCTTCGCATGGGCAGCATCGGAGTCTGGAACTCCATATCACCCTACCTGGGAGGAGTAGGTGTAGCCTCAATGGTGGTGTCCTTCTGTGTGAGTCTGTTCTACAACACTATCGTGGCCTGGGTCCTCTGGTACCTCTTCAACTCCTTCCAGGAACCCCTGCCCTGGAGCCAATGTCCCctcaaccacaacaacacagGGTACGTGGAGGAGTGTGTAGAAAGCACGCCGGTCAACTACTTCTGGTACCGTCAGACCCTGAACATCACTCCTAACATGGAGACCAGTGGCTCTCTACAGTGGTGGATGGTGGTCAGCTTAGCTACCGCCTGGTCTATCGTTTACATCTGTTTTATCAGGGGGATCGAGACCATCGGCAAGGCTGTGTATGTCACAGCAACGTTCCCCTACCTGGTTCTAACCATCTTTCTGGTGAGAGCCCTGACCCTTCCTGGATCATCTGAAGGTCTGATCTACCTGTTCACACCTGACtgGGAGATCCTGAAGAACCCCCAGGTATGGCTGGATGCTGCCACTCAgatcttcttctctctgtcagtGGCCTTTGGTGGACTCATCTCATTCTCCAGTTACAACAGCCAGAAGAATAACTGTGAAAGGGATGCTGTTTTAGTGGGGGTTATAAACAGTGCTACATCTATCTATGCCTCCATCCCCATCTTTGCCATCCTGGGATTCAAGGCCCACACCAACTATGTCACCTGTCTGAATGGTAACATCTTAGCACTGACCAATGAGTTTGATATTAGCGACATGAACATAACGGTTGAAAACTACGAGCAGTGGTTTGACTCTTTAAATGGGACACATCCATCTAGAGTATCCAATCTCAACCTGAAGACATGCGACCTGCAAACCTTCTTGGATCAGAGTGCGTCTGGTACTGGGTTAGCGTTCATCGTGTTCACAGAAGCGGTGATATCGATGCCTGGCTCTCAGgtgtgggCTGTGCTCTTCTTCATCATGCTGTTCAGTCTGGGTCTGTCCTCCATGTTTGGTAATCTAGAGGGCGTCCTCACGCCCCTTCATGACCTCAAACTGGTGCCCAAGTGGATGCCCAATGAGCTCTTCACAGCGTTGATCTGCCTCGTATCGTTCCTGGTGGCTCTGATATTCACTATGGGTTCGGGGAACTACTGGTTGGAGATCTTTAACAGTTACGTGGGCTCTGTACCTCTCCTCATCATCGCCTTCTTTGAGATCATCGCTGTGGCATACATCTACGGAATAGGACGGTTCAGTGATGACTTGGAGTTCATGACAGGACATAGACCCAACATCTTCTGGAAGGTTTGCTGGTTGGTCATCAGCCCTCTGATGCTGATCGTGGTGTTGGTGGCATATGTTGCCGTCCAGGCCCAGACACATCCCACCTACCCAGCATGGAATCCTGACTATGTGAACTTCCCCGACACAGAGGTTCTGCCGTATCCAGACTGGGTGTTTGCCATCTGTGTCCTGCTGTCTTCAGTACCAGTTATCTCCATCCCTCTGGTGGCCATCTACAGACTCATCTGCTGCATGTCAGGAAGACACTCTGAAGACCGTCTCCACAACGATCCGAATCCTTATGCCAACGAAGGCTACGTTGTAGAGAGCTAGACCTTAAAGACACTCTATTTCTATCTATCCTCA

Function

NR:

description
sodium-dependent neutral amino acid transporter B(0)AT1-like

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG:

id description
K05048 SLC6A15S; solute carrier family 6 (neurotransmitter transporter, amino acid/orphan) member 15/16/17/18/20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021562074.2 True 2308 mRNA 0.50 13 5632297 5641547

Neighbor

gene id symbol gene type direction distance location
LOC110489357 slc6a19 coding upstream 16924 5592112 ~ 5615373 (+)
LOC110513117 LOC106589108 coding upstream 107228 5509001 ~ 5525069 (+)
dlgap3 dlgap3 coding upstream 219672 5113201 ~ 5412625 (+)
smim12 smim12 coding upstream 614349 5014549 ~ 5018314 (+)
pef1 pef1 coding upstream 620493 5002978 ~ 5011804 (+)
LOC110489437 LOC106570711 coding downstream 3636 5645183 ~ 5677904 (+)
wipf3 NA coding downstream 82723 5724270 ~ 5749736 (+)
LOC110489352 LOC106570724 coding downstream 177533 5819080 ~ 5856740 (+)
LOC110520219 NA coding downstream 405043 6046590 ~ 6047475 (+)
LOC110487836 LOC106570725 coding downstream 468832 6110379 ~ 6203899 (+)
G2291286 NA non-coding upstream 3072 5628628 ~ 5629225 (+)
G2291266 NA non-coding upstream 64634 5567298 ~ 5567663 (+)
G2291265 NA non-coding upstream 65003 5566974 ~ 5567294 (+)
G2291263 NA non-coding upstream 68694 5563330 ~ 5563603 (+)
G2291258 NA non-coding upstream 74995 5556967 ~ 5557302 (+)
G2291311 NA non-coding downstream 55973 5697520 ~ 5697778 (+)
G2291312 NA non-coding downstream 57389 5698936 ~ 5699674 (+)
G2291313 NA non-coding downstream 58466 5700013 ~ 5700617 (+)
G2291321 NA non-coding downstream 78260 5719807 ~ 5720039 (+)
G2291338 LOC100286654 non-coding downstream 132303 5773850 ~ 5779668 (+)
G2291219 NA other upstream 160144 5471563 ~ 5472153 (+)
G2291194 NA other upstream 214059 5416832 ~ 5418238 (+)
G2290455 NA other upstream 1083453 4546904 ~ 4548844 (+)
G2291490 NA other downstream 506277 6147824 ~ 6148246 (+)
G2291498 NA other downstream 519531 6161078 ~ 6161719 (+)
G2291541 NA other downstream 666589 6308136 ~ 6316697 (+)
G2292347 NA other downstream 1240830 6882377 ~ 6883166 (+)

Expression


Co-expression Network