LOC110489437 (LOC106570711)


Basic Information

Item Value
gene id LOC110489437
gene name LOC106570711
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 5645183 ~ 5677904 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971729.1
TTAACCATGTGCTTCAGATCAAACACTGGAGTAAAGATACCAACACGCAACAGAATAGCTGTGTTCCCTCTACAGAATAAGCGTTGGTTCAGAGTGCTAGAACCTCGGGCTAGAACACACTGGACTAAACTGAAAACCAGAAGGTTGATTTACTACTTGAGCTAAAAACTACTGTTGATCTCTGAGCATGCCAGAGGAAGGTATGGAGGACAGcaaggtgggagaggagagacccAAGTGGAACAACAAGACAGAGTACCTGCTGACCTGCATTGGCTTCGCTGTTGGAGTGGGCAACGTGTGGCGCTTCCCCTACCTCTGCCAGATTTACGGAGGGGGTGCGTTTCTGATCCCCTACCTGATCGCCCTGGTGTTTCAGGGTCTGCCTCTGCTCTACTTGGAGCTGGCTATAGGACAGAGGCTTCGCATGGGCAGCATCGGAGTCTGGAACTCCATATCCCCCTACCTGGGAGGAGTAGGTGTAGCCTCAATGGTGGTGTCCTTCTGTGTGAGTCTGTTCTACAACACTATCGTGGCCTGGGTCCTCTGGTACCTCTTCAACTCCTTCCAGGAACCCCTGCCCTGGAGCCAATGTCCCctcaaccacaacaacacagGGTACGTGGAGGAGTGTGTAGAAAGCACGCCGGTCAACTACTTCTGGTACCGTCAGACCCTGAACATCACTCCTAACATGGAGACCAGTGGCTCTCTACAGTGGTGGATGGTGGTCAGCTTAGCTACCGCCTGGTCTATCGTTTACATCTGTTTTATCAGGGGGATCGAGACCATCGGCAAGGCTGTGTATATCACAGCAACGTTCCCCTACCTGGTACTAACCATCTTTCTGGTGAGAGCCCTGACCCTACCTGGAGCATATGAAGGTCTGATCTACCTGTTCACACCTGACtGGGAGATCCTGAAGAACCCCCAGGTATGGCTGGATGCTGCCACTCAgatcttcttctctctgtcagtGGCCTTTGGTGGACTCATCTCATTCTCCAGTTACAACAGCCAGAAGAATAACTGTGAAAGGGATGCTGTTTTAGTGGGGGTTATAAACAGTGCTACATCTATCTATGCCTCCATCCCCATCTTTGCCATCCTGGGATTCAAGGCCCACACCAACTATGTCACCTGTCTGAATGGTAACATCTTAGCACTGACCAATGAGTTTGATATTAGCGACATGAACATAACGGTTGAAAACTACGAGCAGTGGTTTGACTCTTTAAATGGGACACATCCATCTAGAGTATCCGATCTCAACCTGAAGACATGCGACCTGCAAACCTTCTTGGATCAGAGTGCGTCTGGTACTGGGTTAGCGTTCATCGTGTTCACAGAAGCGGTGATATCGATGCCTGGCTCTCAGgtgtgggCTGTGCTCTTCTTCATCATGCTCTTCAGCCTGGGTCTGTCCTCCATGTTTGGTAATCTGGAGGGCATCCTCACGCCCCTTCATGACCTCAAACTGGTGCCCAAGTGGATGCCCAATGAGCTCTTCACAGCAATAATCTGCCTGCTATCGTTCCTGATGGCTCTGATATTCTGTCTGGGTTCAGGGAACTACTGGTTGGAGATCTTTAACAGTCACGTGGGCTCCGTTCCTCTCCTCATCATCGCCTTCTTTGAGATCATCGCTGTGGCACACATCTACGGAATAGGACGGTTCAGTGATGACTTGGAGTTCATGACAGGACATAGACCCAACATCTTCTGGAAGGTTTGCTGGTTGGTCATCAGCCCCCTGATGCTGTTCGTGGTGTTGGTGGCGTACGTTGTCGCCCAGGCCCAGACACATCACACCTACGCAGCATGGAATCCTGACTACGTGAACTTCCCCGACACAGAGGTTCTGCCGTATCCAGACTGGGTGTTTGCCATCTGTGTCCTGCTGTCTTCAGTACCAGTTATCTCCATCCCTCTGGTGGCCATCTACAGACTCGTCTGCTGCATGTCAGGAAGACACTCTGAAGACCGTCTCCACAACGATCCGAATCCTTATGCCAACGAAGGCTACGTTGTAGAGAGAGCTAGACCCTAAAAGACactgtacttcctgtttgagcttttagtgtaaacaggaatcaggaggatataattatggtcatatttgttaaagggagagagagagagagccttataAATGTGTTTGTGGTTGGAGTAAAAGGTGACCAAGAATGTTGTCGCTTCTCggtgcacaggtgacatgctggtaaaaatgtgatGAAACGAAttagt

Function

NR:

description
sodium-dependent neutral amino acid transporter B(0)AT1-like

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG:

id description
K05048 SLC6A15S; solute carrier family 6 (neurotransmitter transporter, amino acid/orphan) member 15/16/17/18/20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971729.1 True 2247 mRNA 0.50 13 5645183 5677904

Neighbor

gene id symbol gene type direction distance location
slc6a18 LOC106570711 coding upstream 3636 5632297 ~ 5641547 (+)
LOC110489357 slc6a19 coding upstream 29810 5592112 ~ 5615373 (+)
LOC110513117 LOC106589108 coding upstream 120114 5509001 ~ 5525069 (+)
dlgap3 dlgap3 coding upstream 232558 5113201 ~ 5412625 (+)
smim12 smim12 coding upstream 627235 5014549 ~ 5018314 (+)
wipf3 NA coding downstream 46366 5724270 ~ 5749736 (+)
LOC110489352 LOC106570724 coding downstream 141176 5819080 ~ 5856740 (+)
LOC110520219 NA coding downstream 368686 6046590 ~ 6047475 (+)
LOC110487836 LOC106570725 coding downstream 432475 6110379 ~ 6203899 (+)
LOC118946494 NA coding downstream 716411 6394261 ~ 6398382 (+)
G2291286 NA non-coding upstream 15958 5628628 ~ 5629225 (+)
G2291266 NA non-coding upstream 77520 5567298 ~ 5567663 (+)
G2291265 NA non-coding upstream 77889 5566974 ~ 5567294 (+)
G2291263 NA non-coding upstream 81580 5563330 ~ 5563603 (+)
G2291258 NA non-coding upstream 87881 5556967 ~ 5557302 (+)
G2291311 NA non-coding downstream 19616 5697520 ~ 5697778 (+)
G2291312 NA non-coding downstream 21032 5698936 ~ 5699674 (+)
G2291313 NA non-coding downstream 22109 5700013 ~ 5700617 (+)
G2291321 NA non-coding downstream 41903 5719807 ~ 5720039 (+)
G2291338 LOC100286654 non-coding downstream 95946 5773850 ~ 5779668 (+)
G2291219 NA other upstream 173030 5471563 ~ 5472153 (+)
G2291194 NA other upstream 226945 5416832 ~ 5418238 (+)
G2290455 NA other upstream 1096339 4546904 ~ 4548844 (+)
G2291490 NA other downstream 469920 6147824 ~ 6148246 (+)
G2291498 NA other downstream 483174 6161078 ~ 6161719 (+)
G2291541 NA other downstream 630232 6308136 ~ 6316697 (+)
G2292347 NA other downstream 1204473 6882377 ~ 6883166 (+)

Expression


Co-expression Network