LOC110489352 (LOC106570724)


Basic Information

Item Value
gene id LOC110489352
gene name LOC106570724
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 5819080 ~ 5856740 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971826.1
TCCAAATTTGTTGGGATATTTTACTTCCAAACAGACATTTTTCGACAAAAAGAATACGAGTGCAAATAGGTTACAACCTGTCTTGCCAGCCCCAATACTCATACATTGCTGcaagctaactggctactagTAGCTTCGACTTGAGGGATTGTTCCTTAACGTGCGTGAAAAACAAATCGCTTCCTTCTTTTGAAGAGGATAAAGAGGACCTGCGCTGCATAGCTTGTTCTGAATGTCATTTTCCTGGGGTCTGGATTTTATTCTACCAACGGAGTTTTATCTAAATCAGGCTATTCCATCTACTAGTATCTTGATATTAGGACGACAGCGACGGGTGTCGGAAAGGTGTTATCGAGGCAGcacagaggcagagagtgaggaTGCTGACTGGTAAATTGGTGAAAGACATAGACAGATATCAAGCTGTCCTTACCTCGCTACTATCACTCGAGGAGAACAAATTCTGCGCGGATTGTGAATCAAAAGgtccCAGATGGGCGTCATGGAACCTGGGTATATTCATCTGTATCCGCTGTGCTGGGATCCACAGGAACCTGGGCGTCCACATCTCCAGGGTCAAGTCTGTCAACCTGGACCAATGGACACAGGAACAGatacagtgtgTTCAGGAGATGGGGAATGCCAAGGCCAGACGACTTTATGAAGCTTTCCTACCAGAGTGCTTCATACGACCAGAGACTGACCAGTCAGCAGAGATGTTCATCAGGGACAAATATGAGAAGAAGAAGTACATGGACAAGATCCTAGATGTCAACAGGCTtagaAAAGAGAAGACCTGTGAAAACATCCCCATGGAGCCAGTAGTGTTTGAGAAGATGAAGTTGAAGAGAGAAAACAGCCCAAAGACACAGACCCAGTCTCCATCTATCTCAGACCTCCTAGGACTTGacGCTCCTGCTCCTCATGCTGTTGTATCTAATGGTAGATCCAGCCCTGGAGAGAGGGGGTGTCCTGCGGCGGCTAACCCAGCTACGATGCATTCTGACCTGAATCTATTCAGCCCCCTGCctgcctcctccaccacctccaccaagaCCACAgtgagattcagagagagggacCAGTTATACACAGACAGattgacaaacaaacagacagacacaccgGTGGGTAGCTCCATGCCCAGGGGTTGTGTGGCTGCATCGGTACCCGAGAACCTCAGCCTGTTCCTGGACTCAGCACCCAGACAGGAGGGCTCTAGGACAAAGATGTCTAAGgactccatcctctccctctacgGAACCACACCCACATGGCACCAGAACCTGGCTGCACGAGCTGGCCTGTACATGAACCCAGCCCAGCTGGGCTACTACGGATCATACCATTCCCTGGCCACGCAGGGGGGAGCGATGGGAGGAGGCATGATCACATCACACTCCATGATGGCCCTGAGTGGTCAGCAGCAGAACGGTGTGATGGGAGGACCGCAGAACGGAATGGTACTAGCACAGCAGAATGGAATGGTACTAGCACAGCAGAATGGAATGGTACCAGCACAGCAGAATGGAATGGTACTAGCACAGCAGAATGGAATGGTACCAGCACAGCAGAATGGAATGGTACCAGCACAGCAGAATGGAATGGTACCAGCACAGCAGAATGGAATGGTACCAGCACAGCAGAATGGAATGGTACCAGCACAGCAGAATGGAATGGTACCAGCACAGCAGAATGGAATGGTACTAGCACAGCAGAATGGAATGGTACTAGCACAGCAGAATGGAATGGTACTAGCACAGCAGAATGGCTTTATGGCTCAACAGGGTGTCATGGGGCAAGCGGTCAACACATCCCCGTTCCTGGTAGGAGTGCCCCACAACATGATTGCTCAGCAGCAAAGCATCATGGGAGCTCAGCATAAAGGTATGATGGGAGCTCAGCAGAACGGCATGATGGGAGCTCAGCAGAACGGCATGATGGGAGCTCAGCAGAACGGCATGATGGGAGCTCAGCAGAACGGCATGATGGGAGCACCGCAGAACGGCATGATGGGAGCTCAGCAGAACGGCATGATGGGAGCTCAGCAGAACGGCATGATGGGAGCACCGCAGAACGGCATGATGGGAGCTCCGCAGAACGGCATGATGGGAGTTCCGCAGAACGGCATGATGGAAGTTCCGCAGAACGGCATGATGGGAGCTCAGCAGAACGATATGATGGGAGCTCAGCAGATCGGCATGATGGGAGCTCAGCAGAACGATACGATGGGAGCTCCGCAGAACGGCATGATGGAGGCTCAGCAGAACGGCATTATGGGAGCACAGCAGAACGGCATGATGGGAGCTCAGCAGAACGGCATGATGGGAGCTCAGCAGAACGGCATGATGGGAGCTCCGCAGAACGGCATGATGGGAGCTCAGCAGAGCGGCATGATGGGAATTCCGCAGAACGGCATGATGGGAGCTCCGCAGAACGGCATGATGGGAGCTCAGCAGAGCGGCATGATGGGGGCTCAGCAGAACGGCATGACGGGAGCTCAGCAGAACGGCATGATGGGGGCTCAGCAGAACGGCATGACGGGAGCTCAGCAGAACGGCATGATGGGGGCTCAGCAGAACGGTATTAAGGGGGGAGTGGCGGCCGTGCCTCAGCAGGTGTACGGAGTACAGCAGTGTCAGCAGCAACAGTGGAACATCActcagATGACCCAGCACATGGCGGGAGTGAACTTCTATGGAGCCAACGGCATGATGGGATACGGCGGTCAGCACATGGAAGGACCAACGACTCAAAGCTCCACCcacatgatgacatcacacatCTGGAAGTGATGTCATTATCTGAAGAGGAAGTGAAGTTGATGTCACTAGAGCAGCAGTGGTTCTTGGGAGGTTTCGATCTGGCCTCATGTACAGGCCAGCTTTTCTATTAAACTCTCCATCAGACA

Function

NR:

description
PREDICTED: stromal membrane-associated protein 2-like

GO: NA

KEGG:

id description
K12486 SMAP; stromal membrane-associated protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971826.1 True 2911 mRNA 0.52 10 5819080 5856740

Neighbor

gene id symbol gene type direction distance location
wipf3 NA coding upstream 69344 5724270 ~ 5749736 (+)
LOC110489437 LOC106570711 coding upstream 141176 5645183 ~ 5677904 (+)
slc6a18 LOC106570711 coding upstream 177533 5632297 ~ 5641547 (+)
LOC110489357 slc6a19 coding upstream 203707 5592112 ~ 5615373 (+)
LOC110513117 LOC106589108 coding upstream 294011 5509001 ~ 5525069 (+)
LOC110520219 NA coding downstream 189850 6046590 ~ 6047475 (+)
LOC110487836 LOC106570725 coding downstream 253639 6110379 ~ 6203899 (+)
LOC118946494 NA coding downstream 537575 6394261 ~ 6398382 (+)
LOC110487847 LOC106570705 coding downstream 794724 6651464 ~ 6676974 (+)
LOC110489360 LOC105005722 coding downstream 946293 6803033 ~ 6867523 (+)
G2291341 NA non-coding upstream 34324 5784165 ~ 5784756 (+)
G2291338 LOC100286654 non-coding upstream 39412 5773850 ~ 5779668 (+)
G2291321 NA non-coding upstream 99041 5719807 ~ 5720039 (+)
G2291313 NA non-coding upstream 118463 5700013 ~ 5700617 (+)
G2291312 NA non-coding upstream 119406 5698936 ~ 5699674 (+)
G2291359 NA non-coding downstream 10862 5867602 ~ 5872088 (+)
G2291358 NA non-coding downstream 17086 5873826 ~ 5876241 (+)
G2291388 NA non-coding downstream 45207 5901947 ~ 5909243 (+)
G2291392 NA non-coding downstream 58827 5915567 ~ 5916929 (+)
G2291405 NA non-coding downstream 88428 5945168 ~ 5946167 (+)
G2291219 NA other upstream 346927 5471563 ~ 5472153 (+)
G2291194 NA other upstream 400842 5416832 ~ 5418238 (+)
dlgap3 dlgap3 other upstream 411572 5113201 ~ 5412625 (+)
smim12 smim12 other upstream 800766 5014549 ~ 5018314 (+)
G2291490 NA other downstream 291084 6147824 ~ 6148246 (+)
G2291498 NA other downstream 304338 6161078 ~ 6161719 (+)
G2291541 NA other downstream 451396 6308136 ~ 6316697 (+)
G2292347 NA other downstream 1025637 6882377 ~ 6883166 (+)
G2292666 NA other downstream 1333512 7190252 ~ 7190850 (+)

Expression


Co-expression Network