LOC118946494


Basic Information

Item Value
gene id LOC118946494
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 6394261 ~ 6398382 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005041352.1
gcaaacaaaatgCACACCAAACTTAAAGATAGGAAGCAAACCATAAAGCAGGAGCAAATTTAAAACAGGGATATCAGATAAAAATGTTGTTTGTTTAGCATATcaaataaggagagagagaaaactaaaggagttaaccctccacatctatcaagacaactggagcactgggccagcagCTCTTATTAAATATCACCAGGGACAGCAAAGGTGAAACGCCTTTCATCTAACGAGATGAACAAGCCAGCACAGATGTAACAcgtactgactaacgaggaACAGGGGACAACGTCACAGTAGTGTATGATCTGGATGTGACTGACGTGTCACAGCGGGAGGAGATTGTCATTATCCACGCCCTCAGATACTGGACAGCGTCGCCAAGGATACAATGgaagaagccactgctccaaaaccgccataaaaaagccagactaaggtttgcaactgcacaaggggacaaagatcgtactttttggagatatGACCtttggtctaatgaaa
>TU2621309
CTaggacctaaaagacacccaccatgagcgtCCACAACATTTTCCtaagaagaggcaaacaaaatgCACACCAAACTTAAAGATAGGAAGCAAACCATAAAGCAGGAGCAAATTTAAAACAGGGATATCAGATAAAAATGTTGTTTGTTTAGCATATcaaataaggagagagagaaaactaaaggagttaaccctccacatctatcaagacaactggagcactgggccagcagCTCTTATTAAATATCACCAGGGACAGCAAAGGTGAAACGCCTTTCATCTAACGAGATGAACAAGCCAGCACAGATGTAACAcgtactgactaacgaggaACAGGGGACAACGTCACAGTAGTGTATGATCTGGATGTGACTGACGTGTCACAGCGGGAGGAGATTGTCATTATCCACGCCCTCAGATACTGGACAGCGTCGCCAAGGATACAATGgaagaagccactgctccaaaaccgccataaaaaagccagactaaggtttgcaactgcacaaggggacaaagatcgtactttttggagatatGACCtttggtctaatgaaacaaaaatagaactgtttggccataatgaccatcgttatgtttagaggaaaaagggggaggcatgcaagctgaagaacaccatcccaaccgtgaaacccgggggtggcagcatcatgttgtatagaactgaaaactgctgttcacaaatgctctccaaccaacctcactgagctcgagctgttttggaaggaggaataggaaaacatttcagtctctcgatgtgcaaaactgatagagacataccccaagcgacttacagctgtaatcgcagcaaaaggtggcgctacaaagtattaacttaag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005041352.1 False 504 mRNA 0.43 3 6394315 6398079
TU2621309 True 861 lncRNA 0.44 3 6394261 6398382

Neighbor

gene id symbol gene type direction distance location
LOC110487836 LOC106570725 coding upstream 190416 6110379 ~ 6203899 (+)
LOC110520219 NA coding upstream 346840 6046590 ~ 6047475 (+)
LOC110489352 LOC106570724 coding upstream 537575 5819080 ~ 5856740 (+)
wipf3 NA coding upstream 644579 5724270 ~ 5749736 (+)
LOC110489437 LOC106570711 coding upstream 716411 5645183 ~ 5677904 (+)
LOC110487847 LOC106570705 coding downstream 253385 6651464 ~ 6676974 (+)
LOC110489360 LOC105005722 coding downstream 404954 6803033 ~ 6867523 (+)
LOC110487851 LOC106570704 coding downstream 518910 6916989 ~ 6943817 (+)
LOC118946508 NA coding downstream 537273 6935352 ~ 6936494 (+)
LOC110487852 LOC106570703 coding downstream 618151 7016230 ~ 7044759 (+)
G2292009 NA non-coding upstream 12850 6381251 ~ 6381465 (+)
G2292008 NA non-coding upstream 13733 6380382 ~ 6380582 (+)
G2291576 NA non-coding upstream 18803 6318038 ~ 6375512 (+)
G2291590 NA non-coding upstream 45639 6348339 ~ 6348676 (+)
G2291584 NA non-coding upstream 65983 6327556 ~ 6328332 (+)
G2292016 NA non-coding downstream 2328 6400407 ~ 6474299 (+)
G2292026 NA non-coding downstream 56907 6454986 ~ 6456879 (+)
G2292013 NA non-coding downstream 72313 6470392 ~ 6529498 (+)
G2292049 NA non-coding downstream 110411 6508490 ~ 6510000 (+)
G2292047 NA non-coding downstream 118168 6516247 ~ 6516646 (+)
G2291541 NA other upstream 77618 6308136 ~ 6316697 (+)
G2291498 NA other upstream 232596 6161078 ~ 6161719 (+)
G2291490 NA other upstream 246069 6147824 ~ 6148246 (+)
G2291219 NA other upstream 922162 5471563 ~ 5472153 (+)
G2292347 NA other downstream 484298 6882377 ~ 6883166 (+)
G2292666 NA other downstream 792173 7190252 ~ 7190850 (+)
G2293172 NA other downstream 1448600 7846541 ~ 7847462 (+)
e2f3 LOC106570699 other downstream 1516545 7897661 ~ 7920212 (+)
G2293430 NA other downstream 1677608 8075687 ~ 8078381 (+)

Expression


Co-expression Network