LOC110489360 (LOC105005722)


Basic Information

Item Value
gene id LOC110489360
gene name LOC105005722
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 6803033 ~ 6867523 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036970956.1
gctctcttatcCTCGTGGAAGCACGCGCCCACCCGCCCgttatctgcctctctctgtcggCTGGTTGTTGTCTCACGAGGCTTGAGTGTGACGGTGTCACGTTAACATGGTTTGCAGGGCTCAGCCGCAGTAGCAGCATAAGAAGAGAAAGAAGTAGAGACAGTAGCTGTGTGTTCCAAGCAGCCAGTCCGGACTCTCTCCCATCTCACATCTATCGACCGGAGGACGCAGCCAGACAAAACCGAACTTCCCCCCACCTCTtcccgtctctctcgctcccacgtCCCCATCGCGACGCTCGGTGATCAGGAGCTTGCGGAGCTCTCTCTTAGATAAAGGGTTGTAACCAGGGGCCTGGTAGGTGTTGTTGCCACTGAGACCGAGTGTGTGTCGCCACGGTGTTGCGTCGTTGCCATGGGGAAACAGAACAGCAAGCTACGGCCAGAGATGCTTCAGGACCTGAGAGAGAACACGGAGTTCTCTGACCACGAACTACAGGAGTGGTACAAGGGATTCCTAAAGGACTGTCCCAGCGGCAACCTGAACGTGGAGGAGTTCAAGAAGATCTACGCCAACTTCTTCCCGTACGGAGATGCCTCCAAGTTCGCCGAGCACGTCTTCCGAACGTTTGACACCAACAACGACGGCACCATCGACTTCCGGGAGTTCATCATCGCGCTGAGTGTCACGTCACGGGGAAAGCTGGAGCAGAAACTGAAGTGGGCCTTCAGCATGTATGACCTGGATGGGAATGGGTACATCAGCCGTGATGAGATGCTGGAGATCGTACAGgccatttacaaaatggtgtcgtctgtgatGAAGATGCCGGAGGATGAGTCCACGCCGGAGAAGAGAACAGACAAGATCTTCAGACAGATGGACCTCAACAACGatggtaAACTGTCCCTGGAGGAGTTCATTAAAGGTGCCAAAAGTGATCCCTCCATCGTGCGGCTACTCCAGTGTGACCCCAGCTCCGCCTCCCAGTTCTAATCCCGCCCACCTGGCCTGCCACGTCCACCCCGGTTGCTATGGAAACGCTCAAATCAGTGCATGATGGTTCTCGTCTCTCATATCTTTTTGTTGTACAAGTTGGAAGAAGAGTTTTAAAATGAGATGAAACTAAAATCATTCtaagtttttttgtttgttttttaagaaTATAAATGAAAGAAGGGACATGCATAGATTATTATTAAGAAGATAATACGACAACTGAGAATACAAAAAACAAGGCGTTGCCAAGGCATTTTGTTGTCCGATGtgttttcctgtctctctccggACCCGGAAGGATGGAATTCTGGAAGGATGGAATTCCGGAAGGATGGAATTCCGGAAGGATGGAATTCTGGAAGGATGGAATGGAATTCTGCTGAGCTCCGCTGCCTCACAACGCCCGGGAAGTCCGTCTGCCATTTTTTACAGTCGGGAATTTTTGGGGGAGAGAATTAAGGGAACATTCCATCCTGAGAACCATCCATGGCCCTCTGTGTTCTAATTATTCTGTTCAATAGATTCTGTTTCTCCTCCAATCAAGGCACAGCTTCTAGAATTCTCTTACATGTTGATGTGTAAAAagaatgcatatatatatatatatatatatgacatcataCAAAATGAATAGCCAAGTATATCTGTCTTTTATAAGTCGTTGCATTCAGAAGGCAGTATTATGGAGCTGTGCTTGCTCTGATTCCGATCTGGGAATTCCGTAGCGGTTTTCCGTAGAGGGAATTATGAGACAGGGGAAGGAAAGAAGTTGGGAATTTTCCTGCTAACTGATCTTCCACTGGGGGGGGAAAAAAAGCTGTTGAAAATACCATTGGGTTTTTATTAttgattgttattattttattacaTACTATTGTTTTTCCTCCTCATGTTGTTTACTTATATATTGATTCATTTTAATTATTGTGGTTGTTTATTTTTGATTTTGCCATTGAAGACGATCGTAACCCAATACTGGAGATGAatcgaaagaaagaaagaaagaaagaaagaaagaaagatagagagagaaatagaaagatcCTTGGATAATGACTTGTCTTTGGAGACCGTCCGTCTCATATCCGTCCACGATGGAAAACGAAGAACGTTTGATAACATAATGCATTTGATCAACGAAACCGGTAGCAGCAAATCATATCATTTGAGCCGCCACgagtgtatgcatgcatgcatgtgtgtgtgtgtgtgtgtgtgtgtctgagtgtgtgtgtgtgtgtgcatgtgtgtacagtatgcatgTGTACAGTTTGTGTATGTCCAGGCTAACTTAACAGTCTAATCAATAATGTTGTTTATTGACATGTAATATAAAGTATTTAAAAGTTATTTATTTGAACACTTTATTACGTCACTGAGCAGTAAAGTCGTCACATTGTCAACAAACACTGCATGGTaaaaacacacaacaaaaaaaacacggAAAATAAGATTAGTAGCTTTTCTCTCTTCATCAGCACTCTTACTGTAGTCTACCAGACCACTCTTACTGTAGCCTACCAGACCACTCTTACTGTAGCCTACCAGACCACTCTTACTGTAGCCTACCAGACCACTCTTACTGTAGCCTACCAGACCACTCTTACTGTAGTCTACCAGACCACTCTTACTGTAGTCTACCAGACCACTCTTACTGTAGTCTACCAGACCACTCTTACTGTAGTCTACCAGACCACTCTTACTGTAGCCTACCAGACCACTCTTACTGTAGCCTACCAGACCACTCTTACTGTAGCCTACCAGACCACTCTTACTGTAGCCTACCAGGCCACTCTTACTGTAGCCTACCAGACAACTCTTACTGTAGCCTACCAGACCACTCTTACTGTAGCCTACCAGACCACTCTTACTGTAGCCTACCAGACCACTCTTACTGTAGTCTACCAGACCACTCTTACTGTAGTCTACCAGACCACTCTTACTGTAGCCTACCAGACCACTCTTACTGTAGTCTACCAGACCACTCTTACTGTAGCCTACCAGACCACTCTTACTGTAGTCTACCAGACCACTCTTACTGTAGCCTACCAGACCACTCTTACTGTAGCCTACCAGACCACTCTTACTGTAGCCTACCAGACCACTCTTACTGTAGCCTACCAGACCACTCTTACTGTAGCCTACCAGACCACTCTTACTGTAGCCTACCAGACCACTCTTACTGTAGCCTACCAGACCACTCTTACTGTAGTCTACCAGACCACTCTTACTGTAGTCTACCAGACCACTCTTACAGTAGTCTACCAGACCACTCTTACTGTAGCCTACCAGACCACTCTTACTGTAGCCTACCAGACTACACACAGAAGATGCATGTCCCGTCTTTGcgcactcgtgtgtgtgtgtgtccgtgtgtgccaCTTTGAGACAGaccccttccctccttccctccctcgtcTCCTAGACATAGAGAACACACTAAGGGCTTCATTATCATTCTCAATCCCAATGCGTTTGTGTCATCTTCCTATGTGTACTTAGCCAACAGGCAGTAGGTAGAGTTGTTTTAAGACACTGATCACCAAGaaaaatgtgtcccaaatgacaccctattccctatatagtgcactactttttgaccaagaccccatagggctctgggcgAGTGCATACTTCAGAATGTTTACTGCACTGCACCTCTGCTAATGGTCTCCCAGTGTCACTGCCCCCTGCTGGTTGGATGAGGAACAGTCGCTGCTACACTGCTGCTAAATTATTTgacaggttttccagaaatctcaGTAGGAAGATTCTCAGATTTCCTGCTGATTCCAGGGATTTTTCCAACAGGGATTTCTGGAAAAAAACTGGACATTTTGGaaaagttaccagaattttgcaatcCTATTCCGTCCTACCTACCGCTCTTCTATTCCGTCCTACCCACCCCTCTTCTATTCCGTCCTACCTACCGCTCTTCTATTCCGTCCTACCTACCCCTCTTGTATTCCGTTCTACCTACCCCTCTTCTATACCGTTCTACCTACCCCTCTTCTCTACCGTTCTACCTACCCCTCTTCTCTACCGTCCTACCTACCCCTCTTGTATTCCGTTCTACCTACCCCTCTTCTATACCGTTCTACCCACCCCTCTTCTATTCCGTTCTACCTACCCCTCTTCTATACAGTCCCACCTACCCCTCTTCTATTCCGTCCTACCCACCCCTCTTCTATTCCGTCCTACCTACCGCTCTTCTATTCCGTTCTACCTACCCCTCTTCTATACAGTCCCACCTACCCCTCTTCTATTCCGTCCTACCCACCCCTCTTCTATTCCGTCCTACCTACCCCTCTTCTCTACCGTTCTACCTACCCCTCTTCTCTACCGTCCTACCTACCCCTCTTCTATACCGTTCTACCTACCCCTCTTCTCTACCGTCCTACCTACCCCTCTTGTATTCCGTTCTACCTACCCCTCTTCTCTACCGTCCTACCTACCCCTCTTGTATTCCGTTCTACCTACCCCTCTTCTCTACCGTCCTACCTACCCCTCTTGTATTCCGTTCTACCTACCCCTCTTCTATACCGTTCTACCTACCCCTCTTCTATACCGTTCTACCTACCCCTCTTGTATTCCGTTCTACCTACCCCTCTTCTATACCGTTCTACCTACCCCTCTTCTATTCCGTTCTACCTACCCCTCTTCTATACCGTTCTACCTACCCCTCTTCTATTCCGTTCTACCTACCCCTCTTCAATTCCCACTGCCTCTAAAACTGGTACCTTCAGTTGGATcaatagtattattattttttctgtTGCATGAAAACCTCCAGCAAAGAGTGTGATGTTTCTTCCTGTTTTGATCCGAATCAATGACAAATATACCTTGTGTATTTCAAACA

Function

NR:

description
PREDICTED: hippocalcin-like protein 1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23847 HPCAL1; hippocalcin-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036970956.1 True 4864 mRNA 0.46 5 6803033 6867523

Neighbor

gene id symbol gene type direction distance location
LOC110487847 LOC106570705 coding upstream 126059 6651464 ~ 6676974 (+)
LOC118946494 NA coding upstream 404954 6394261 ~ 6398382 (+)
LOC110487836 LOC106570725 coding upstream 599134 6110379 ~ 6203899 (+)
LOC110520219 NA coding upstream 755558 6046590 ~ 6047475 (+)
LOC110489352 LOC106570724 coding upstream 946293 5819080 ~ 5856740 (+)
LOC110487851 LOC106570704 coding downstream 49466 6916989 ~ 6943817 (+)
LOC118946508 NA coding downstream 67829 6935352 ~ 6936494 (+)
LOC110487852 LOC106570703 coding downstream 148707 7016230 ~ 7044759 (+)
LOC110487858 LOC106589075 coding downstream 659840 7527363 ~ 7563955 (+)
LOC110487859 LOC106570693 coding downstream 704327 7571850 ~ 7590800 (+)
G2292277 NA non-coding upstream 51878 6750825 ~ 6751155 (+)
G2292225 NA non-coding upstream 111787 6691024 ~ 6691246 (+)
G2292078 NA non-coding upstream 119148 6677453 ~ 6683885 (+)
G2292096 NA non-coding upstream 171647 6628345 ~ 6631386 (+)
G2292090 NA non-coding upstream 192549 6610244 ~ 6610484 (+)
G2292342 NA non-coding downstream 9740 6877263 ~ 6877893 (+)
G2292344 NA non-coding downstream 13169 6880692 ~ 6881469 (+)
G2292357 NA non-coding downstream 77821 6945344 ~ 6946766 (+)
G2292356 NA non-coding downstream 79376 6946899 ~ 6947478 (+)
G2291541 NA other upstream 486336 6308136 ~ 6316697 (+)
G2291498 NA other upstream 641314 6161078 ~ 6161719 (+)
G2291490 NA other upstream 654787 6147824 ~ 6148246 (+)
wipf3 NA other upstream 1053575 5724270 ~ 5749736 (+)
G2291219 NA other upstream 1330880 5471563 ~ 5472153 (+)
G2292347 NA other downstream 14854 6882377 ~ 6883166 (+)
G2292666 NA other downstream 322729 7190252 ~ 7190850 (+)
G2293172 NA other downstream 979156 7846541 ~ 7847462 (+)
e2f3 LOC106570699 other downstream 1047101 7897661 ~ 7920212 (+)
G2293430 NA other downstream 1208164 8075687 ~ 8078381 (+)

Expression


Co-expression Network