LOC118946508


Basic Information

Item Value
gene id LOC118946508
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 6935352 ~ 6936494 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005041382.1
ttttacaatgacagcctcccccccgaccaaaccctcccctatccaGGACACATTGGGCTTGTTAAGGCTCTGAAGTCCAAACAATTTGGTCGCATACACGACAAAATATCGTTAGCATCACAGTTGCACCATTTATCTAGCTCAACCAGGTCAAAAAAAAGATCTGACCTACAGTGCATGTATATTTGAGTTATTTAAGCCGACACTCCAGACTAGACGGCTCAATCAGCTATAGAAGGTGTCACCTCTCGCCACCACATCACACAGCTGTACAGCTAGTCCTGCTGCTGAGGCTGATGGGGATTTTTAAGTCATGCCGGATGTGACTGTGATCAGATAATTTAGGAGGGGTCATTTTAATGTGGATAAAGTGTACTTTCACCCCTGCTTACTGACCACTCCCAACCTACTACTGCCAACCTGAAGAATAAACTACTATTTAAATCATTTCATTATCAAGGTGTGTCATTTTGTGGTTCTCtttcactgcaaaaaaaaacccAACACTTTGATCTCATCAGGTGTTTGTTTGCAGCATGCCACGTGGAATTCACTCTGTTACATTAAGGTTCATGTGGATGTTTTTGCagtgtcattattgggtattgtgtgtagattgatgaggaaaaatgtatatttaatcgattttagaataacgctgtaacgtaacaaaatgtgggaaaggggaaggggtctgaatactttccgaatgctctgtatattactgtataaaCCATGTCGTGGTCCGTTTTTTTAAAAACTGCTCGCGCTTTTCCGTCGTTAACCATCTGTTTACACTTTGTTCAGTCGTGTTCACTCGTCGGTTGGCGAGCTGAGGGGCCGCGGGAAAGAAAAGGGATCAATGGTCATAGCAACACACTTTCTTCGATAGCAATGAATGTATGACAGATCTCTTGTCATTGCACGTTGTCATCACAAACCcgccatttattttatttaaagagACAGTGTACTGAGAAACCTACTATTTACATGTGGCTTTTGTAATTTCACCCGACAGGTGTTTTGTAATAAACATTTTAGCTTTCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005041382.1 True 1050 mRNA 0.41 2 6935352 6936494

Neighbor

gene id symbol gene type direction distance location
LOC110489360 LOC105005722 coding upstream 67829 6803033 ~ 6867523 (+)
LOC110487847 LOC106570705 coding upstream 258378 6651464 ~ 6676974 (+)
LOC118946494 NA coding upstream 537273 6394261 ~ 6398382 (+)
LOC110487836 LOC106570725 coding upstream 731453 6110379 ~ 6203899 (+)
LOC110520219 NA coding upstream 887877 6046590 ~ 6047475 (+)
LOC110487852 LOC106570703 coding downstream 79736 7016230 ~ 7044759 (+)
LOC110487858 LOC106589075 coding downstream 590869 7527363 ~ 7563955 (+)
LOC110487859 LOC106570693 coding downstream 635356 7571850 ~ 7590800 (+)
LOC110489363 LOC106589070 coding downstream 865397 7801891 ~ 7846316 (+)
LOC118946479 NA coding downstream 942645 7878210 ~ 7881862 (+)
G2292344 NA non-coding upstream 53883 6880692 ~ 6881469 (+)
G2292342 NA non-coding upstream 57459 6877263 ~ 6877893 (+)
G2292289 NA non-coding upstream 72505 6858402 ~ 6862847 (+)
G2292340 NA non-coding upstream 84528 6850394 ~ 6850824 (+)
G2292315 NA non-coding upstream 131399 6803441 ~ 6803953 (+)
LOC110487851 LOC106570704 non-coding downstream 4781 6916989 ~ 6943817 (+)
G2292357 NA non-coding downstream 8850 6945344 ~ 6946766 (+)
G2292356 NA non-coding downstream 10405 6946899 ~ 6947478 (+)
G2292372 NA non-coding downstream 16887 6953381 ~ 6953586 (+)
G2292373 NA non-coding downstream 20888 6957382 ~ 6960408 (+)
G2292347 NA other upstream 52186 6882377 ~ 6883166 (+)
G2291541 NA other upstream 618655 6308136 ~ 6316697 (+)
G2291498 NA other upstream 773633 6161078 ~ 6161719 (+)
G2291490 NA other upstream 787106 6147824 ~ 6148246 (+)
wipf3 NA other upstream 1185894 5724270 ~ 5749736 (+)
G2292666 NA other downstream 253758 7190252 ~ 7190850 (+)
G2293172 NA other downstream 910185 7846541 ~ 7847462 (+)
e2f3 LOC106570699 other downstream 978130 7897661 ~ 7920212 (+)
G2293430 NA other downstream 1139193 8075687 ~ 8078381 (+)
G2293464 NA other downstream 1169134 8105628 ~ 8106009 (+)

Expression


Co-expression Network