LOC110487852 (LOC106570703)


Basic Information

Item Value
gene id LOC110487852
gene name LOC106570703
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 7016230 ~ 7044759 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036970885.1
TGCATCCGTCTCCATTTTCAACAGGCAAAGCGCCGCGACAGGAGCACCCAGCCGCCCTCGTCAGCAGCCGTGCGGTAACAGCGAGAGCAATACATGCGAAGCAGCGAAATTAATCTGCACGAATAAGTGGATATTTACGCACTGATTACATCATTTTACTGGACTATTTATtctactgttgttgtttatgttttctATCCACCCGAAGTTTGTTTTTAATTGCACAATTCGCATTTCTAACTGATTTCCAACTCAAAATGGAGAATCAAGAAGGCAAATACCTCCCGGAGCTCCTCGCGGAGAAAGACAGTCTGGACGTGTCATTTACGCACGCGATGAAACTTTTATCCGCAGAAATCGAGAGAATCCAGAAAGGCGAGCCCAAGAAGGAAGGAGGAGACTCGTATCTGGACCTTTTCACCGTCAAGAATATCAAACTGAAGGAACGCGTGCTCATACCCGTCAAACAGTATCCGAGGTTCAACTTTGTGGGGAAGATTCTTGGCCCTCAGGGCAACACAATCAAACGCCTTCAGGAAGAGACTGGGGCCAAGATCTCTGTACTGGGCAAAGGTTCCATGAGGGACAAGGCGAAGgAGGAGGGTCTGAGGAAAGGTGGCGAGGCCAAGTACGCACACCTGTCTATGGAGCTGCATGTCTTCATCGAGGTGTTTGCCCCCGTGCCCGAGGCTTACCTACGTATGGCACACGCCATGGAGGAAGTCAAGAAGTTCCTGTTTCCTGACATGATGGATGACATCTGTCAGGAACAGTTCATGGAGATGGGTTATCTGAACGGGGGCCAGGAGCACGGGCCAGGGGCCCCACGAGGTAGAGGCGGACCACCGGGCCCCAGGGGCCGAGGAGGGCCACCGGGTCAAACAGGGGCCTCCAgGGGTAGAGGTATGCTCCCACGTGGAGGTGTCACAAGGGGAGGTGCGCCCCGCGGAGGGCCAGCGAGAGTTGGAGTAGTGAGGGGGTCACCGGCAGGAAGAGGGGGACCTCCAGCTGCCCCCGCTCGAGGGGCAGCAACACCCCGAGCCAGACCCCCTGCCCCTGGGGGACCACCTAGGAtgccccctccacccccccaccagCACCAACACGGCCCAGGACCGGAACAATATGAGGAATATGCTTATGATGAGGGCTACACAGAGCCAGCGTACGAGTCATACGACAATTACTACAGTCAACCACAGGCAGAGCCAGAGTACTACGACTACGGACATGGAGAGGTACAGGAGGCATATGAACCCTACGCCCAGGATGACTGGAACGGAGCCCAGAGAGCGGCACCGGCGGGGAAGGCCCCACCTTCCAGAGCGGCTAAGGGCCCTTACCGAGAACACCCCTATAGACAATACTGAACTCACCATGACAGCGCCTAGCGACCAACGCTAACGAGTTGCCCTGACAACCAACCAACCTGTCTACCACGGCAGCTCTCGCTCTAAGCAACCCTCGACAAAAGTAATTGtccgtttttgtttttgttttggtatTTTCTACTACGATGGACTTTTACAAACAGGAAATGAGGATCTTGACTGATTGAAGCTGGTTTGATATTTCATTCAGAGCAACcctaaagcattttttttttttttttagatgggTTAGAGAATATAACTGTATTTTAGTTTGGTTTGAAGTTTTAGTTAATCTGTTTTTATCTCTGACCCTATCTCTCCCTTggctttttttttgcattgttgaccgtaaactttttttttttcttcttctttttacaTTTTGGATTTAAACTCATTTCGAGTGGAGTTGGAGACTGCTTATCCACTTGTTAGCATCTTAAGAAAAccattttttaattattttgtttaaaaaaaaaaaactttgttaAGGGACAGTTGCAGATTCCCATTTAGGCTACATTTCAAAATTCTGTTTTAATATAGCGGAGTAAAAGGAAAAATTCAACGCTGTTTCAGTTATGTAATATAGACCAAACCAAAAAAAACGTAAAAATCAAGTCAAGaggaaatagtaaaaacaaacaaatgttaATGGAATTTCTAGCAGCGATCTATTCATTCTTGATTTATAATTCCCATTTGTTTTAAATAGTCTTTTAATTAAAAGTTGTCAATTTAGATTTAGGCAGCAGGGATTATATAAATGATATTTTGTCATTGTACATTTAGAGTtttgaaatataggcctatatAACCACTGTTGAGATGGACTGTCCTCACATACTTCATTTGTTCATTAAAGTTGTTCAACATTTTTAAGTACATTTTTATTATGGCTCTGTGTTCTACTTCTTAGAAGTAGAATATGGCCTTAGATGATAAAGGGAAAACAACACGTGTTACTACAGGATCTTATTGGTTGAATCTGAGTCTATAAActgcatgtaaaaaaaaaaatgacgcaATGAAGGATTGGGACAAAAATCTCCACATGGGTTTTCTCTTTACACAGAGAAGGGATCCTGCAGTTCATTAATCTGGTGTCTTTGTAcatactttaaaaaataaaaataaaccctCCAAACTGTACGTATCCACTATTCTGCCACTGGTATATGTACCCTCTCCATTAAAAATGCATTATGCTCTATGTGTAAGGCTTGTCTAAATAGGTACTACTACATCTGCCCAGAAGATGTTTTGTAGCAGTTTGTCAATAAAGATTTAGTTTGTTTTTTTCTATGAAA
>XM_036970886.1
TGCATCCGTCTCCATTTTCAACAGGCAAAGCGCCGCGACAGGAGCACCCAGCCGCCCTCGTCAGCAGCCGTGCGGTAACAGCGAGAGCAATACATGCGAAGCAGCGAAATTAATCTGCACGAATAAGTGGATATTTACGCACTGATTACATCATTTTACTGGACTATTTATtctactgttgttgtttatgttttctATCCACCCGAAGTTTGTTTTTAATTGCACAATTCGCATTTCTAACTGATTTCCAACTCAAAATGGAGAATCAAGAAGGCAAATACCTCCCGGAGCTCCTCGCGGAGAAAGACAGTCTGGACGTGTCATTTACGCACGCGATGAAACTTTTATCCGCAGAAATCGAGAGAATCCAGAAAGGCGAGCCCAAGAAGGAAGGAGGAGACTCGTATCTGGACCTTTTCACCGTCAAGAATATCAAACTGAAGGAACGCGTGCTCATACCCGTCAAACAGTATCCGAGGTTCAACTTTGTGGGGAAGATTCTTGGCCCTCAGGGCAACACAATCAAACGCCTTCAGGAAGAGACTGGGGCCAAGATCTCTGTACTGGGCAAAGGTTCCATGAGGGACAAGGCGAAGgAGGAGGGTCTGAGGAAAGGTGGCGAGGCCAAGTACGCACACCTGTCTATGGAGCTGCATGTCTTCATCGAGGTGTTTGCCCCCGTGCCCGAGGCTTACCTACGTATGGCACACGCCATGGAGGAAGTCAAGAAGTTCCTGTTTCCTGACATGATGGATGACATCTGTCAGGAACAGTTCATGGAGATGGGTTATCTGAACGGGGGCCAGGAGCACGGGCCAGGGGCCCCACGAGGTAGAGGCGGACCACCGGGCCCCAGGGGCCGAGGAGGGCCACCGGGTCAAACAGGGGCCTCCAgGGGTAGAGGTATGCTCCCACGTGGAGGTGTCACAAGGGGAGGTGCGCCCCGCGGAGGGCCAGCGAGAGTTGGAGTAGTGAGGGGGTCACCGGCAGGAAGAGGGGGACCTCCAGCTGCCCCCGCTCGAGGGGCAGCAACACCCCGAGCCAGACCCCCTGCCCCTGGGGGACCACCTAGGAtgccccctccacccccccaccagCACCAACACGGCCCAGGACCGGAACAATATGAGGAATATAGAGCCAGAGTACTACGACTACGGACATGGAGAGGTACAGGAGGCATATGAACCCTACGCCCAGGATGACTGGAACGGAGCCCAGAGAGCGGCACCGGCGGGGAAGGCCCCACCTTCCAGAGCGGCTAAGGGCCCTTACCGAGAACACCCCTATAGACAATACTGAACTCACCATGACAGCGCCTAGCGACCAACGCTAACGAGTTGCCCTGACAACCAACCAACCTGTCTACCACGGCAGCTCTCGCTCTAAGCAACCCTCGACAAAAGTAATTGtccgtttttgtttttgttttggtatTTTCTACTACGATGGACTTTTACAAACAGGAAATGAGGATCTTGACTGATTGAAGCTGGTTTGATATTTCATTCAGAGCAACcctaaagcattttttttttttttttagatgggTTAGAGAATATAACTGTATTTTAGTTTGGTTTGAAGTTTTAGTTAATCTGTTTTTATCTCTGACCCTATCTCTCCCTTggctttttttttgcattgttgaccgtaaactttttttttttcttcttctttttacaTTTTGGATTTAAACTCATTTCGAGTGGAGTTGGAGACTGCTTATCCACTTGTTAGCATCTTAAGAAAAccattttttaattattttgtttaaaaaaaaaaaactttgttaAGGGACAGTTGCAGATTCCCATTTAGGCTACATTTCAAAATTCTGTTTTAATATAGCGGAGTAAAAGGAAAAATTCAACGCTGTTTCAGTTATGTAATATAGACCAAACCAAAAAAAACGTAAAAATCAAGTCAAGaggaaatagtaaaaacaaacaaatgttaATGGAATTTCTAGCAGCGATCTATTCATTCTTGATTTATAATTCCCATTTGTTTTAAATAGTCTTTTAATTAAAAGTTGTCAATTTAGATTTAGGCAGCAGGGATTATATAAATGATATTTTGTCATTGTACATTTAGAGTtttgaaatataggcctatatAACCACTGTTGAGATGGACTGTCCTCACATACTTCATTTGTTCATTAAAGTTGTTCAACATTTTTAAGTACATTTTTATTATGGCTCTGTGTTCTACTTCTTAGAAGTAGAATATGGCCTTAGATGATAAAGGGAAAACAACACGTGTTACTACAGGATCTTATTGGTTGAATCTGAGTCTATAAActgcatgtaaaaaaaaaaatgacgcaATGAAGGATTGGGACAAAAATCTCCACATGGGTTTTCTCTTTACACAGAGAAGGGATCCTGCAGTTCATTAATCTGGTGTCTTTGTAcatactttaaaaaataaaaataaaccctCCAAACTGTACGTATCCACTATTCTGCCACTGGTATATGTACCCTCTCCATTAAAAATGCATTATGCTCTATGTGTAAGGCTTGTCTAAATAGGTACTACTACATCTGCCCAGAAGATGTTTTGTAGCAGTTTGTCAATAAAGATTTAGTTTGTTTTTTTCTATGAAA
>XR_005041290.1
TGCATCCGTCTCCATTTTCAACAGGCAAAGCGCCGCGACAGGAGCACCCAGCCGCCCTCGTCAGCAGCCGTGCGGTAACAGCGAGAGCAATACATGCGAAGCAGCGAAATTAATCTGCACGAATAAGTGGATATTTACGCACTGATTACATCATTTTACTGGACTATTTATtctactgttgttgtttatgttttctATCCACCCGAAGTTTGTTTTTAATTGCACAATTCGCATTTCTAACTGATTTCCAACTCAAAATGGAGAATCAAGAAGGCAAATACCTCCCGGAGCTCCTCGCGGAGAAAGACAGTCTGGACGTGTCATTTACGCACGCGATGAAACTTTTATCCGCAGAAATCGAGAGAATCCAGAAAGGCGAGCCCAAGAAGGAAGGAGGAGACTCGTATCTGGACCTTTTCACCGTCAAGAATATCAAACTGAAGGAACGCGTGCTCATACCCGTCAAACAGTATCCGAGGTTCAACTTTGTGGGGAAGATTCTTGGCCCTCAGGGCAACACAATCAAACGCCTTCAGGAAGAGACTGGGGCCAAGATCTCTGTACTGGGCAAAGGTTCCATGAGGGACAAGGCGAAGgAGGAGGGTCTGAGGAAAGGTGGCGAGGCCAAGTACGCACACCTGTCTATGGAGCTGCATGTCTTCATCGAGGTGTTTGCCCCCGTGCCCGAGGCTTACCTACGTATGGCACACGCCATGGAGGAAGTCAAGAAGTTCCTGTTTCCTGACATGATGGATGACATCTGTCAGGAACAGTTCATGGAGATGGGTTATCTGAACGGGGGCCAGGAGCACGGGCCAGGGGCCCCACGAGGTAGAGGCGGACCACCGGGCCCCAGGGGCCGAGGAGGGCCACCGGGTCAAACAGGGGCCTCCAgGGGTAGAGGTATGCTCCCACGTGGAGGTGTCACAAGGGGAGGTGCGCCCCGCGGAGGGCCAGCGAGAGTTGGAGTAGTGAGGGGGTCACCGGCAGGAAGAGGGGGACCTCCAGCTGCCCCCGCTCGAGGGGCAGCAACACCCCGAGCCAGACCCCCTGCCCCTGGGGGACCACCTAGGAtgccccctccacccccccaccagCACCAACACGGCCCAGGACCGGAACAATATGAGGAATATGCTTATGATGAGGGCTACACAGAGCCAGCGTACGAGTCATACGACAATTACTACAGTCAACCACAGGCAGAGCCAGAGTACTACGACTACGGACATGGAGAGGTACAGGAGGCATATGAACCCTACGCCCAGGATGACTGGAACGGAGCCCAGAGAGCGGCACCGGCGGGGAAGGCCCCACCTTCCAGAGCGGCTAAGGGCCCTTACCGAGAACACCCCTATAGACAATACTGAACTCACCATGACAGCGCCTAGCGACCAACGCTAACGAGTTGCCCTGACAACCAACCAACCTGTCTACCACGGCAGCTCTCGCTCTAAGCAACCCTCGACAAAAGTCCAACTATTAGTCAGTCATGGACCAATCAGAgggtggcttactggagagagagagagaaccaatcaGAGGTCGGCTTACTGGAGAGATGATACCATACATACCTCAGtGAGGTGGTACAGGAGCAGCAGGGCTCTACATGACAGAGCACTGGATCGCCGTCAGGCTCCACAGTGAAGAACTGACCCAGTAGAGGGCACCAATACTGGGGTAGAGCAGTCTGCAAGGAGGGCAGGCTGCCCAGAGGACCAGAGAGCAGATATAgcctacagaggagagagaagggagcctTGGCCCTGCTAGAAAAAGAAGAGGGGTGGTTCTATGAGGCTCTGTATTAGAATCTGAATGAGGGGAGAAGATTCTGGAATGTGAAGCTATGAAACTTTACTGTGAAGCTATGACACTTTACTGTGAAGCTATGGCACTACTGTGAAGCTATGACACTACTGTGAAGCTATGACACTACTGTGAAGCTATGACACTACTGTGAAGCTATGACACTACTGTGAAGCTATGACACTACTGTGAAGCTATGACACTACTGTGAAGCTATGACACTACTGTGAAGCTATGACACTACTGTGAAGCTATGACACTACTGTGAAGCTATGACACTACTGTGAAGCTATGACACTACTGTGAAGCTATGACACTACTGTGAAGCTATGACACTACTGTGAAGCTATGACACTACCGTGAAGCTATGACACTACCGTGAAGCTATGACACTACCGTGAAGCTATGACACTACCGTGAAGCTATGACACTACCGTGAAGCTATGACACTACCGTGAAGCTATGACACTACCGTGAAGCTATGACACTACCGTGAAGCTATGACACTACCGTGAAGCTATGACACTACCGTGAAGCTATGACACTTTACTGTGAAGCTATGACACTACTGTGAAGCTATGACACTTTACTGTGAAGCTATGACACTTTACTGTGAAGCTATGACACTACTGTGAAGCTATGACACTACCGTGAAGCTATGACACTACCGTGAAGCTATGACACTTTACTGTGAAGCTATGACACTTTACTGTGAAGCTATGACACTACTGTGAAGCTATGACACTACTGTGAAGCTATGATACTTTACTGTGAAGCTATGACACTTTACTGTGAAGCTATGACACTTTACTGTGAAGCTATGACACTTTACTGTGAAGCTATGACACTACTATGAAGCTATGACACTACTATGAAGCTATTACACTTTACTGTGAAGCTATGACACTACTGTGAAGCTATGACACTACTATGAAGCTATGACACTTTACTGTGAAGCTATGCTTGTGATGTCTATGTTTGACTGTGGTGTTTTGATACCGTACTGCTTATTCACTGCTAggcactttttttgttgttgatatgaaTCACTTTTATATTGTTGTGTAACGTGAACAGTTTCCAAGACCTTTTACAGTTTGTAGTGAAGTGAAACTTCACTG

Function

NR:

description
PREDICTED: KH domain-containing, RNA-binding, signal transduction-associated protein 1-like isoform X2

GO: NA

KEGG:

id description
K13198 KHDRBS1; KH domain-containing, RNA-binding, signal transduction-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036970885.1 False 2683 mRNA 0.44 9 7016230 7039710
XM_036970886.1 False 2615 mRNA 0.44 8 7016230 7039710
XR_005041290.1 True 2933 mRNA 0.50 11 7016230 7044759

Neighbor

gene id symbol gene type direction distance location
LOC110487851 LOC106570704 coding upstream 73874 6916989 ~ 6943817 (+)
LOC118946508 NA coding upstream 79736 6935352 ~ 6936494 (+)
LOC110489360 LOC105005722 coding upstream 148707 6803033 ~ 6867523 (+)
LOC110487847 LOC106570705 coding upstream 339256 6651464 ~ 6676974 (+)
LOC118946494 NA coding upstream 618151 6394261 ~ 6398382 (+)
LOC110487858 LOC106589075 coding downstream 482604 7527363 ~ 7563955 (+)
LOC110487859 LOC106570693 coding downstream 527091 7571850 ~ 7590800 (+)
LOC110489363 LOC106589070 coding downstream 757132 7801891 ~ 7846316 (+)
LOC118946479 NA coding downstream 834380 7878210 ~ 7881862 (+)
e2f3 LOC106570699 coding downstream 852902 7897661 ~ 7920212 (+)
G2292385 NA non-coding upstream 25183 6990633 ~ 6991047 (+)
G2292380 NA non-coding upstream 46168 6969793 ~ 6970062 (+)
G2292376 NA non-coding upstream 51697 6964324 ~ 6964533 (+)
G2292375 NA non-coding upstream 52333 6963440 ~ 6963897 (+)
G2292373 NA non-coding upstream 55822 6957382 ~ 6960408 (+)
G2292445 NA non-coding downstream 64798 7109557 ~ 7112661 (+)
G2292603 NA non-coding downstream 71564 7116323 ~ 7116594 (+)
G2292604 NA non-coding downstream 72019 7116778 ~ 7118313 (+)
G2292639 NA non-coding downstream 114929 7159688 ~ 7160039 (+)
G2292650 NA non-coding downstream 125225 7169984 ~ 7170212 (+)
G2292347 NA other upstream 133064 6882377 ~ 6883166 (+)
G2291541 NA other upstream 699533 6308136 ~ 6316697 (+)
G2291498 NA other upstream 854511 6161078 ~ 6161719 (+)
G2291490 NA other upstream 867984 6147824 ~ 6148246 (+)
wipf3 NA other upstream 1266772 5724270 ~ 5749736 (+)
G2292666 NA other downstream 145493 7190252 ~ 7190850 (+)
G2293172 NA other downstream 801920 7846541 ~ 7847462 (+)
G2293430 NA other downstream 1030928 8075687 ~ 8078381 (+)
G2293464 NA other downstream 1060869 8105628 ~ 8106009 (+)

Expression


Co-expression Network