LOC118946479


Basic Information

Item Value
gene id LOC118946479
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 7878210 ~ 7881862 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005041317.1
CAGTACCAGGTCATCTCTTAACCTTTAGGCAGGTCATATCTTAACCTTTAGGCAGTACCAGGTCATCTCTTAACCTTTAGGCAGTACCAGGTCATATCTTAACCTTTAGGTAGTACCAGGTCATCTCCATTGGCAATCCAATTGTGAAAGATCTGTATTTCTTGACCGGAGTGTTGGAGTTAATTGATAATCCCGGATGTTGTTTGGAGTAAAAGGGTGAATGTGAGTTGATGTACAAATTGGTGATCTTTCCAAGACCACTGGTATAGAGAAATGTACATTACCATTGTTATCGTCATAACTAAACTGAAATGTGTTGCTT
>TU2622823
ggaatttacCCCCGACCTTGGTTGTAAACAAATAGATGTCCACTCTGGGCCACCGTAGTAGTGGACATAAGAGCCTGGAGTTACTACTGACCCCTTGACCTGACCAGGTCGGCATATTTAACAGCTGTTTGGCTGTTGTTTGGCAGACCGGGTTCATTCATATACCAAATCGTTTCCTTTCCCTTTTAAGACAACACTGACCGGTGTGGAGATATCTCAATCCACTACACTGGCTtccttctctcatctcctttcctttTTAAGACAACACTGACCGGTGTCTAAGAGCAATGGGCTTCATATAAAGGAGACTGGGGCTGCATGGGAGATATCTCAATCCACTACACTGGCTTCCTTCTTTCACCTCCTTTCCTTCATGATAGGTGAGAGAGGCTTTCACCATATGTTGCTTCCACCTGCCAGATCAGAGATGACGAAGGAAAGGTTCAATGAAAGGAAGCACGCTTACACTATTGAGACAGCCCAGGTCCTATATCTAGATTGGGGAAGTAACCTATTATACTCActgcttaaataaaaaaaaatgtaaaaagaatTTGCAAGGCACAGTGAAATTTACAACTGGTAAACATCTGTTACCTAGACATCATTAAATCCAGTAGGTTTTTAGTAATATGGCCTAACGACAGATTCTAATTTGGTCCAAAAGGATAGACAGGTTTGAGTGCATTTGCAGCAAACAGATGACACCTCTTAACCTTTCGGCAGTACCTGGTCATCTCTTAACCTTTAGGCAGTACCAGGTCATCTCTTAACCTTTAGGTAGTACCAGGTCATATCTTAACCTTTAGGCAGGTCATCTCTTAACCTTTAGGCAGGTCATATCTTAACCTTTAGGCAGTACCAGGTCATCTCTTAACCTTTAGGCAGTACCAGGTCATATCTTAACCTTTAGGTAGTACCAGGTCATCTCTTAACCTTTAGGCAGTACCAGGTCATCTCTTAACCTTTAGGCAGTACCAGGTCATCTCTTAACCTTTAGGCAGTACCAGGTCATATCTTAACCTTTAGGTAGTACCAGGTCATCTCCATTGGCAATCCAATTGTGAAAGATCTGTATTTCTTGACCGGAGTGTTGGAGTTAATTGATAATCCCGGATGTTGTTTGGAGTAAAAGGGTGAATGTGAGTTGATGTACAAATTGGTGATCTTTCCAAGACCACTGGTATAGAGAAATGTACATTACCATTGTTATCGTCATAACTAAACTGAAATGTGTTGCT
>TU2622824
ggaatttacCCCCGACCTTGGTTGTAAACAAATAGATGTCCACTCTGGGCCACCGTAGTAGTGGACATAAGAGCCTGGAGTTACTACTGACCCCTTGACCTGACCAGGTCGGCATATTTAACAGCTGTTTGGCTGTTGTTTGGCAGACCGGGTTCATTCATATACCAAATCGTTTCCTTTCCCTTTTAAGACAACACTGACCGGTGTGGAGATATCTCAATCCACTACACTGGCTtccttctctcatctcctttcctttTTAAGACAACACTGACCGGTGTCTAAGAGCAATGGGCTTCATATAAAGGAGACTGGGGCTGCATGGGAGATATCTCAATCCACTACACTGGCTTCCTTCTTTCACCTCCTTTCCTTCATGATAGGTGAGAGAGGCTTTCACCATATGTTGCTTCCACCTGCCAGATCAGAGATGACGAAGGAAAGGTTCAATGAAAGGAAGCACGCTTACACTATTGAGACAGCCCAGGTCCTATATCTAGATTGGGGAAGTAACCTATTATACTCActgcttaaataaaaaaaaatgtaaaaagaatTTGCAAGGCACAGTGAAATTTACAACTGGTAAACATCTGTTACCTAGACATCATTAAATCCAGTAGGTTTTTAGTAATATGGCCTAACGACAGATTCTAATTTGGTCCAAAAGGATAGACAGGTTTGAGTGCATTTGCAGCAAACAGATGACACCTCTTAACCTTTCGGCAGTACCTGGTCATCTCTTAACCTTTAGGCAGTACCAGGTCATCTCTTAACCTTTAGGTAGTACCAGGTCATATCTTAACCTTTAGGCAGTACCAGGTCATCTCTTAACCTTTAGGCAGTACCAGGTCATCTCTTAACCTTTAGGTAGTACCAGGTCATCTCTTAACCTTTAGGCAGTACCAGGTCATCTCTTAACCTTTAGGCAGTACCAGGTCATCTCTTAACCTTTAGGCAGGTCATCTCTTAACCTTTAGGCAGTACCAGGTCATCTCTTAACCTTTAGGCAGTACCAGGTCATCTCTTAACCTTTAGGCAGTACCAGGTCATATCTTAACCTTTAGGTAGTACCAGGTCATCTCCATTGGCAATCCAATTGTGAAAGATCTGTATTTCTTGACCGGAGTGTTGGAGTTAATTGATAATCCCGGATGTTGTTTGGAGTAAAAGGGTGAATGTGAGTTGATGTACAAATTGGTGATCTTTCCAAGACCACTGGTATAGAGAAATGTACATTACCATTGTTATCGTCATAACTAAACTGAAATGTGTTGCT
>TU2622828
ggaatttacCCCCGACCTTGGTTGTAAACAAATAGATGTCCACTCTGGGCCACCGTAGTAGTGGACATAAGAGCCTGGAGTTACTACTGACCCCTTGACCTGACCAGGTCGGCATATTTAACAGCTGTTTGGCTGTTGTTTGGCAGACCGGGTTCATTCATATACCAAATCGTTTCCTTTCCCTTTTAAGACAACACTGACCGGTGTGGAGATATCTCAATCCACTACACTGGCTtccttctctcatctcctttcctttTTAAGACAACACTGACCGGTGTCTAAGAGCAATGGGCTTCATATAAAGGAGACTGGGGCTGCATGGGAGATATCTCAATCCACTACACTGGCTTCCTTCTTTCACCTCCTTTCCTTCATGATAGGTGAGAGAGGCTTTCACCATATGTTGCTTCCACCTGCCAGATCAGAGATGACGAAGGAAAGGTTCAATGAAAGGAAGCACGCTTACACTATTGAGACAGCCCAGGTCCTATATCTAGATTGGGGAAGTAACCTATTATACTCActgcttaaataaaaaaaaatgtaaaaagaatTTGCAAGGCACAGTGAAATTTACAACTGGTAAACATCTGTTACCTAGACATCATTAAATCCAGTAGGTTTTTAGTAATATGGCCTAACGACAGATTCTAATTTGGTCCAAAAGGATAGACAGGTTTGAGTGCATTTGCAGCAAACAGATGACACCTCTTAACCTTTCGGCAGTACCTGGTCATCTCTTAACCTTTAGGCAGTACCAGGTCATCTCTTAACCTTTAGGTAGTACCAGGTCATATCTTAACCTTTAGGCAGTACCAGGTCATCTCTTAACCTTTAGGCAGTACCAGGTCATATCTTAACCTTTAGGTAGTACCAGGTCATCTCCATTGGCAATCCAATTGTGAAAGATCTGTATTTCTTGACCGGAGTGTTGGAGTTAATTGATAATCCCGGATGTTGTTTGGAGTAAAAGGGTGAATGTGAGTTGATGTACAAATTGGTGATCTTTCCAAGACCACTGGTATAGAGAAATGTACATTACCATTGTTATCGTCATAACTAAACTGAAATGTGTTGCTTTAAAAAACAACTAAATCACATATTTAAGTAATGGCAATAATACCAAAACATCAACCATGTACTTTTCAATTCATAATGAAACTCACAGAAGATACCACTTCAAATGTTTCAGCTTCTTCACATTTAAAAGCAAAAcatgtagagtagtataatagTCCCATCATACAAAGACTAACATTAAGCTGGGACAAAACCTGCTGAGCAAAACATGAAgcgctgacagacagagagagacagagagagagagagagagagaacatgaagcgctgacagacagagagagagagagagagagagagagagaacatgaagcactgagagagagagagagagagaaagagagaacatgaagcactgagaaagagagagagagagagaacatgaagcactgagaaagagagagagagagagagagagagagagagagagagagagagagagagaacatgaagcactgagaaagagagagagagagagagaacatgaagcactgagaaagagagagagagaacatgaagcactgagagagagagagagagagaacatgaagcaatgagaaagagagagagagagaacatgaagcactgagaaagagagagagagagaacatgaagcacagagagagagagagaacatgaagcacagagagagagagagagagaacatgaagcacagagagagagagagaacatgaagcactgagagagagagagagaacatgaagcacagagagagagagagagagagagaacatgaagcactgagagagagagagaacatgaagcactgagagagagagagaacatgaagcactgacagagagaacatgaagcactgacagagagaacatgaagcactgacagagagaacatgaagcactgacagacagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaacatgaagcactgagaaagagagagagagagagagagagagagagagagagagaacatgaagcactgagagagagagagagagagaacatgaagcactgacagagagaacatgaagcactgacagacagagaaagagagtgaacatgaagcacagagacagagagagagagaacatgaagcactgacagacagagagaacatgaagcactgacagagagaacatgaagcactgacagacagagagagaacatgaagaaCTGACTGACAGAAAGAACatgaagcacagagagagaacataaagcactgacagagagagagagagagagagaacatgaagcactgacagacagagagaacatgaagcactgacagagagaacatgaagcactgacagacagagagagagaacatgaagaactgactgacagagagaacatgaagcacagagagagaacatgaagcactgacagacagagagagagagagagagaacatgaagcactgacagacagagagaacatgaagcactgacagacagagaacaagacGATGGGTCTTCCTAGACATTTATACCAACTAACCAGTCAGTCCtcatcggtctctctctcccctcagaacATTCCTCATGGGCTGTAGGGAACAGGGCACCATTCAGGATACAGTCAATCCAGTGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005041317.1 False 322 mRNA 0.39 2 7879139 7879576
TU2622823 False 1244 lncRNA 0.42 2 7878210 7879575
TU2622824 False 1279 lncRNA 0.42 2 7878210 7879575
TU2622828 True 2709 lncRNA 0.43 4 7878210 7881862

Neighbor

gene id symbol gene type direction distance location
LOC110489363 LOC106589070 coding upstream 32823 7801891 ~ 7846316 (+)
LOC110487859 LOC106570693 coding upstream 288339 7571850 ~ 7590800 (+)
LOC110487858 LOC106589075 coding upstream 316101 7527363 ~ 7563955 (+)
LOC110487852 LOC106570703 coding upstream 834380 7016230 ~ 7044759 (+)
LOC110487851 LOC106570704 coding upstream 936783 6916989 ~ 6943817 (+)
e2f3 LOC106570699 coding downstream 18085 7897661 ~ 7920212 (+)
LOC110487863 LOC106569297 coding downstream 319088 8197381 ~ 8202360 (+)
si:ch211-152p11.4 LOC106570678 coding downstream 530828 8410404 ~ 8420764 (+)
tnfa LOC100136509 coding downstream 624048 8503624 ~ 8506000 (+)
LOC118946524 uap56 coding downstream 947334 8826910 ~ 8833518 (+)
G2293212 NA non-coding upstream 1314 7876740 ~ 7877825 (+)
G2293206 NA non-coding upstream 12653 7865629 ~ 7866486 (+)
G2293203 NA non-coding upstream 17937 7860416 ~ 7861202 (+)
G2293201 NA non-coding upstream 21758 7856183 ~ 7857381 (+)
G2293199 NA non-coding upstream 25573 7853334 ~ 7853566 (+)
G2293216 NA non-coding downstream 4106 7883682 ~ 7884044 (+)
G2293233 NA non-coding downstream 26267 7905843 ~ 7906341 (+)
G2293226 NA non-coding downstream 41860 7921436 ~ 7921804 (+)
G2293228 NA non-coding downstream 42342 7921918 ~ 7922324 (+)
G2293172 NA other upstream 31677 7846541 ~ 7847462 (+)
G2292666 NA other upstream 688289 7190252 ~ 7190850 (+)
G2292347 NA other upstream 995973 6882377 ~ 6883166 (+)
G2291541 NA other upstream 1562442 6308136 ~ 6316697 (+)
G2291498 NA other upstream 1717420 6161078 ~ 6161719 (+)
G2293430 NA other downstream 196111 8075687 ~ 8078381 (+)
G2293464 NA other downstream 226052 8105628 ~ 8106009 (+)
G2293677 NA other downstream 470637 8350213 ~ 8350683 (+)
G2293829 NA other downstream 631296 8510872 ~ 8511770 (+)
LOC118946508 NA coding upstream 941716 6935352 ~ 6936494 (+)

Expression


Co-expression Network