LOC110487863 (LOC106569297)


Basic Information

Item Value
gene id LOC110487863
gene name LOC106569297
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 8197381 ~ 8202360 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559778.2
TCCAGAATCCGCATTACATTGAACtaatgcgtgtgtatgtgtaaaGCATGGGTCTTATTATTGAGAAAGGCGGCAGAGAAACGACTGCAAATAACTGCCTCTCAGTTCGCTTCAGACCAGCGgttcagacagtcagacagaaatGAGGTCAGATACACGAACGCTCATTGCACACTCCGATTATTATTACACGGTTTATTCAGCCAATGGACGCCGGCGGGGAGTGGTTTTGGCCAAAAACAGGATAGAGACAGCGCGTGATTGGCTGTTTAGAATGGCTTTTATTTCTCGGGAGGGGATATAAAAGTGTGTGGCGTTGAACGGTATGTTTACAGTATACTGGCAGAACGATAAGGAAAAAGGGGACTATGAAAAAGTGCGACACTTCCATTCTTCCACATGGTTCTCTTACTGCTCAGGCTAGCTGTGCAGACAGCGATATTAAACATCTCATAGGAAAGTTACGGAGTTGTTTTCAGCAGCGAAGTGTTCTTGGTATCACAGGGCGAGTTTTCAGTCGCACTGGAAGTTGAACGTTTGAGTGCAGAACTTTGACGTTTGAACTTGTTATTTTGTGCATCTTTTGGAAAATATCCGCGCACCGGAGACTTAAGTACACAGTGCTCCAAAACGGACTGATCAGACAGAGTACTGCGAAGAAAGAGAAAGCAGACCTGCAACAACTTTTACACATTCGGTCTGTGTGGTTACACAAACATACATTTCTTGAGTGACTGAAACAAAACTCTGATGATAGAACATTGGCAACTTTTACGCACTTCACACCATAACGACATAATTCTGAATAGCACTTTTTTAAAAATTTGCATTCCTGTCTaaccgagagacagagaaggaaagaaagggaAACGATGGTACAGCACATCAGCCACGCAGAGAGCACAGATCCCTTCTCTCCCGGCGGCGACTCCACCGATACCGGGGATATGGACTTGGACGTGGACCCGTCCCCGACTCCCGGGTCTCCGCTATCCTCCAACGGAAGGGACCGAGGCAACGTCGCCTGGTGTAAAACCCCCACAGGACACATCAAGAGACCGATGAACGCGTTTATGGTGTGGTCTCAGATCGAGAGGAGAAAGATCATGGAGCAGAGCCCGGACATGCACAACGCCGAGATCTCCAAGAGGCTGGGCAAGCGCTGGAAGCTGCTCAAAGACACGGACAAGATCCCCTTCATCCGGGAAGCAGAGCGGCTGAGGCTCAAGCACATGGCCGACTACCCTGACTACAAGTACCGGCCGAGGAAGAAGGTTAAGACACCCAGTACCAAGacagagcggggagagagaggggagaaaggagcgGATAGGAGCGGGGGCTCAAAATCCTCCTTGAAAAAAAGCTCTGGATCTATGGGGGCCAGCAGAGCGCACAAGCAGGGACAGGGGAGCGCCAAGCTGGCTACCCAGGGGCCGGAGTGTGCATCTTCCGCGGATCACCACACACTCTACAAATCCAGGTCAGTGACTAGCGCTCGACAGATACCAGACAAGCAAACGAGGCGCGAACACATGTTTGGCGGAGGAGGGAGCTTGGACAGCGGGCCACCCTCTGTGGGAGTCCCGGGCAGTCCTGCCCTGAGCAGCTCGGCTGAGTCCAGTGACCCGATGAGCCTGTACGATGACCAGGTGACGGGGACTAGCAAAGCCACTAACccttcatcatcctcatcatcaaaGGCCCGCCTCAGGTATACACGTGCTTCCTCTCCAACCCCGTCCGCCTCTcactcctctgcctcctccctctcttcttcctcggATGAAGAGCAGGAGGATGAGCGGTTCGAGCTACAGCCGAGCCCTGGGTTTAAGAGCATGTCTCTGGGCAGCATGGGGCCATGTGTGTCGGAGCTGGACAGGGATCTGGACTGGAGCTTCGGGGAGTGCGGGGCGGGATCTCACTTTGACTTCCCCGACTACTGCACCCCAGAGGTCAGCGAGATGATCTCGGGAGACTGGCTGGAGTCCACCATCTCCAACCTGGTCTTCACCTACTGAgcggcagagaggaggagagaaaagaaaacGCACAGAGAAAATAAGGGAAAGAGAACCCCCTGCCTCGCGCAAAACTAAAACCCCGTGAGTGAGAATCTTCAGACATTCTTTCAGATTAATGGGGAGTGAAACGTGCACAAAATAATTCCCCTGCGGTTTCGGAAAATAATAGCCTAATTTGAAGGACATGTGTTTAGGTTATTCAAGCATGGTGTGTGCTTAATTAAGAACATCATATTTTTCATTTTGTGCTTATTGACAGGGATCATAGACACGAATTGGGACAGGCATGGGAGCATTGCTGCCTAGTGCGCAGACCTGACGGAAATAAAGTGCTTAGCTTGCATTTGGAGACGGGAGAAATGCTTTCTTACTCCCTTTGATCCCGCCTCTGTTTAGGAGTGACACACAGACGGACTTACTGAACGGAAGCATTCAACCGGGCCGCAGAAGGACGTTTTTTTCTGCCTGATGGTGATGATGACTGTATGAATAAAGAACATTTTTGGAGAGCTTGACGTTGCAAGTGGGTTGACGGTTTTATAAGGGACCCAGTCTGGTTATTTACCCGCCCTGTGTTGATGGTGTTTGTGGAGTTAATATTCAGGTTTGTTTTTCTTTCTGAAACTTAGAATAATAATGATAACAGCAAGCACGCGCTCCCTGTGGACTATTGTTCAATTTTAGTGATGAACCTGAAATAATAATGTTTATCGCAATGTGATTACAgcgctgagtgtgtgtgtgtgcgcgcgcgtgtgtgtgtgtaaccacagAACACAGTTCACAATCACCAGCTTTCCTCTCAACGGCAGGACTTTTAATTAACAACTTAAAACTCAGAATCTTTTGTCTGAAAACTTTTACGCTCTCAATGCACATTTCAGGACCATTTCCCTTCCTGCGCAACTCCTAGTGCTTCTGACTTTGTAGTTATTCTATATCAGATGACGTTTTTTATATCGATGTATTTATACCAGCcgaacatgttttttttgttgttgttttatacTTTGAAGTATTGTTATCGTATAATAGGTCTCGTTTATGTGTAAGCCATGCACCTGTCTGTATCCCTCCGCGGGAGGGCTAGACGTGTATCTTATTTGAATGTTAATATCTCTCACTTTTTAAAGGAGAACTCAGTGTGTCATTGTCTATACGTGTATTTTTGTAGAAGATCTAAAGAGTGGATGCCGGTGGATTTTTAGGGTTAGTTTCCCTTATCTTCGAAGCCAGAGGGTCCGTTGTCACACAATCTGCTCCCTATACTATGTTTACGCATTGATAGTATCACGCCACATGCTTCTTAAAGGCACAGTGTCTATATTTCACCAGCCGAGTAAACAAACTCTCACACCACTGGAGCACCATTTCCACCCGGTGACTGCGTTTCTACAGTGGGTTTGGATAACCTGGACCCAATCTGTTTGCTCTGTCATGTTAAAGACcttggcatgatggcacaaacagactggtacacAGGCTATATCAGAACTgttaaagagagagatagagatgctgTTCGATTGAGAGAAAACATCTGTATGCTTTTATGGTGATATGTTTGATTTGAAACCACTGGATGGAATGTGACACTCACTATATTCTATATGCCTATTTGAgtcagagggagatggagggaggtggagggaggtggagggaggtggagg
>TU2623222
tgtgtgtgtgtgtgtgtgcgcgcgcgcgcgtgtgtgtgtgtgtaaccacagAACACAGTTCACAATCACCAGCTTTCCTCTCAACGGCAGGACTTTTAATTAACAACTTAAAACTCAGAATCTTTTGTCTGAAAACTTTTACGCTCTCAATGCACATTTCAGGACCATTTCCCTTCCTGCGCAACTCCTAGTGCTTCTGACTTTGTAGTTATTCTATATCAGATGACGTTTTTTATATCGATGTATTTATACCAGCcgaacatgttttttttgttgttgttttatacTTTGAAGTATTGTTATCGTATAATAGGTCTCGTTTATGTGTAAGCCATGCACCTGTCTGTATCCCTCCGCGGGAGGGCTAGACGTGTATCTTATTTGAATGTTAATATCTCTCACTTTTTAAAGGAGAACTCAGTGTGTCATTGTCTATACGTGTATTTTTGTAGAAGATCTAAAGAGTGGATGCCGGTGGATTTTTAGGGTTAGTTTCCCTTATCTTCGAAGCCAGAGGGTCCGTTGTCACACAATCTGCTCCCTATACTATGTTTACGCATTGATAGTATCACGCCACATGCTTCTTAAAGGCACAGTGTCTATATTTCACCAGCCGAGTAAACAAACTCTCACACCACTGGAGCACCATTTCCACCCGGTGACTGCGTTTCTACAGTGGGTTTGGATAACCTGGACCCAATCTGTTTGCTCTGTCATGTTAAAGACcttggcatgatggcacaaacagactggtacacAGGCTATATCAGAACTgttaaagagagagatagagatgctgTTCGATTGAGAGAAAACATCTGTATGCTTTTATGGTGATATGTTTGATTTGAAACCACTGGATGGAATGTGACACTCACTATATTCTATATGCCTATTTGAgtcagagggagatg
>TU2623223
tgtgtgtgtgtgtgtgtgcgcgcgcgcgcgtgtgtgtgtgtaaccacagAACACAGTTCACAATCACCAGCTTTCCTCTCAACGGCAGGACTTTTAATTAACAACTTAAAACTCAGAATCTTTTGTCTGAAAACTTTTACGCTCTCAATGCACATTTCAGGACCATTTCCCTTCCTGCGCAACTCCTAGTGCTTCTGACTTTGTAGTTATTCTATATCAGATGACGTTTTTTATATCGATGTATTTATACCAGCcgaacatgttttttttgttgttgttttatacTTTGAAGTATTGTTATCGTATAATAGGTCTCGTTTATGTGTAAGCCATGCACCTGTCTGTATCCCTCCGCGGGAGGGCTAGACGTGTATCTTATTTGAATGTTAATATCTCTCACTTTTTAAAGGAGAACTCAGTGTGTCATTGTCTATACGTGTATTTTTGTAGAAGATCTAAAGAGTGGATGCCGGTGGATTTTTAGGGTTAGTTTCCCTTATCTTCGAAGCCAGAGGGTCCGTTGTCACACAATCTGCTCCCTATACTATGTTTACGCATTGATAGTATCACGCCACATGCTTCTTAAAGGCACAGTGTCTATATTTCACCAGCCGAGTAAACAAACTCTCACACCACTGGAGCACCATTTCCACCCGGTGACTGCGTTTCTACAGTGGGTTTGGATAACCTGGACCCAATCTGTTTGCTCTGTCATGTTAAAGACcttggcatgatggcacaaacagactggtacacAGGCTATATCAGAACTgttaaagagagagatagagatgctgTTCGATTGAGAGAAAACATCTGTATGCTTTTATGGTGATATGTTTGATTTGAAACCACTGGATGGAATGTGACACTCACTATATTCTATATGCCTATTTGAgtcagagggagatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559778.2 False 3697 mRNA 0.48 1 8198664 8202360
TU2623222 False 914 lncRNA 0.41 2 8197381 8202326
TU2623223 True 912 lncRNA 0.41 2 8197381 8202326

Neighbor

gene id symbol gene type direction distance location
e2f3 LOC106570699 coding upstream 279214 7897661 ~ 7920212 (+)
LOC118946479 NA coding upstream 319088 7878210 ~ 7881862 (+)
LOC110489363 LOC106589070 coding upstream 352348 7801891 ~ 7846316 (+)
LOC110487859 LOC106570693 coding upstream 607864 7571850 ~ 7590800 (+)
LOC110487858 LOC106589075 coding upstream 635626 7527363 ~ 7563955 (+)
si:ch211-152p11.4 LOC106570678 coding downstream 208044 8410404 ~ 8420764 (+)
tnfa LOC100136509 coding downstream 301264 8503624 ~ 8506000 (+)
LOC118946524 uap56 coding downstream 624550 8826910 ~ 8833518 (+)
LOC110487872 LOC106570657 coding downstream 689279 8891639 ~ 8896196 (+)
LOC110489365 LOC106570660 coding downstream 705090 8907450 ~ 8934029 (+)
G2293525 NA non-coding upstream 1357 8195900 ~ 8197307 (+)
G2293512 NA non-coding upstream 26527 8171850 ~ 8172137 (+)
G2293510 NA non-coding upstream 27313 8171135 ~ 8171351 (+)
G2293507 NA non-coding upstream 28275 8170119 ~ 8170389 (+)
G2293496 NA non-coding upstream 36210 8161446 ~ 8162454 (+)
G2293528 NA non-coding downstream 408 8202768 ~ 8203448 (+)
G2293534 NA non-coding downstream 3893 8206253 ~ 8206529 (+)
G2293540 NA non-coding downstream 11616 8213976 ~ 8214256 (+)
G2293546 NA non-coding downstream 14379 8216739 ~ 8216984 (+)
G2293580 NA non-coding downstream 83881 8286241 ~ 8286589 (+)
G2293464 NA other upstream 92655 8105628 ~ 8106009 (+)
G2293430 NA other upstream 120283 8075687 ~ 8078381 (+)
G2293172 NA other upstream 351202 7846541 ~ 7847462 (+)
G2292666 NA other upstream 1007814 7190252 ~ 7190850 (+)
G2293677 NA other downstream 147853 8350213 ~ 8350683 (+)
G2293829 NA other downstream 308512 8510872 ~ 8511770 (+)
G2293942 NA other downstream 588741 8791101 ~ 8876464 (+)
G2293943 LOC106570655 other downstream 641653 8844013 ~ 8847252 (+)
G2294081 NA other downstream 892432 9094792 ~ 9103186 (+)

Expression


Co-expression Network