si:ch211-152p11.4 (LOC106570678)


Basic Information

Item Value
gene id si:ch211-152p11.4
gene name LOC106570678
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 8410404 ~ 8420764 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971670.1
tctgtcgctctctctgtctctctctgtgtcgctctctctctgtctctctctgtgtcgctctctctctctctctctctctctgtctctctctgtctctctctctcttccatttcCCATACCCGCTTGGCTTCCCTTCTGTGGTTCCCTACCTGCACctatatccctccttccctccatccggCGGCGCTGCCATCATGCGTCGGTTCAGCTCCGAGGGGTCCCTATTGAATATGGACTTCCTGCCGTGGAAGAAGGTGGAGCTTAAGGACCAGAACTACCACAGCCGGGACGGGGAGTCAGGCACCTACACCCCACACCTGGGAGAGGACACACTGGATGGGCgaaccacctctctcccccccacgccCATCATCCTGGAGCCTGAGGCCAGCCCTGGGAGGACACCGGGGAGGGGGGAGCTGGGCAAGGAGCACAGCGTCAGCGTGGAGAACGTCACAGAACTGGGGAGGCCAGAGGGTAAGGGTCATCTGAGAGTGGTGAACCTCAGCGAAGGATGCAGGGCGTACAGTGACGGCCAGTTGGCGCCGGCGACTTCGGGTAGCAGCACAGAGAGCGTGGGCAGGCACGACCGGCCTCCGCCCTCTCCCTCGTACTCAACCTTTGACTCCAGCCCCTTTTCCTTCAAGTCACAGCAACGGTCCCACGCCAGAGCCAAGCTGTCAGCAGCCAAGCTACATCTGAAGAGCCTGTTTGGGCAGAGTCCCCATTCGTCACACTCCAACCTGTTTAACCCAGAGCAGAAAGACCGtGTTAAAGAGCAGCGGTCCCGCCTCCCGTTCCTTCGCCAATGGAGTCAGGTGGGCCACAGCAAGGTCCAGTTCAGCCGGGAGGAACTGGATAAGTGGGCTGAGTCGCTGGACGCCCTCCTGGCTAGTCGGAtgGGCGTGTCTGTGTTTGGAGCATTCCTTCGCTCAGAGTTTAGTGAGGAGAATCTGCAGTTCTATCTGGCCTGTGAGCAGTACAGAAACTCCTCCAACAACTTCAGCCTGCACAGACGGGCCAAGGAGATCACTGTCACCTATATCGAGGCGGGGGCACCGCGAGAGgTGAACTTGGACAGTAAGACCAGAGATCTAACCACACAGCTCCTACAGGCCCCATCACACACCTCCCTGTCTCACGCCCAGAAACGCATCTACTCCCTCCTGGATACAGACTGCTACCCTCGCTTCCTCCAGTCCACCATCTACCTCACCTTGCTGGGCCAGGCTGACTAGAGACTAAGGACTCCAGTCAATCCATATCGCAGAAGTTCAGCACTATAGTGCAATTTGACATTTTTAATGGCAATGTTCCTACGTTCGCGGAGAATTCACGTTAAACGCTACTGCACATTTTGTCTCAATCTCTGAACTTCCACAATACAAAATGAATGGAGACCTAAAGGCCGCATCCCTGTGGCTGCATCCTTATTCTCCGCTCTTCATCCTTTCTCCCAAAGTACTTTTGTAGATACGGAGCAGTGGTGGGGACAGttacaatgcagagttaaagaggGTTTAAAGGGGTTTAAATGCCAGTAGATGAGCAGGCTGGTGTTTCATTCATTAGGGAACAGAAGCACttgacattttttgtttgttttgcaaCAGAAGACAAGAGTGTTTTTTTTAATTGGACAAGTCCAGATAGTCCCTCCACTGTTTCAGTCAGGTTTTCTTAATTcgatgcctaatgaacatgacccaggtgttTGTACTGCTTGGGGTGTGAAAGGGGCTTAAGGGAGGTAAAAGCAGGGAAAGGGgtttggatggatggaaggagcttGCCAAGCGATAAACTCGGGTTACGAGACAGGGGTCTGTTTTTTTCCATGACTTAGAGAGGTGCAACCCGAGGTGGCGTGAAACTATGCAGATCTCAATGTTTGTAATCATTAAACGTCCTCTTTTTAACTCGATAGGTCCCCCACGGTCCAATGAGCACGTACGGAAAAGCGCCAACAGAAAGGAAAAAAAACAGCCAAGACGGAGCTCTAGTTAAAGAACTGAGTTActtgcagtgccttcagaaagtattcatacccctgtctctctgtctctctctctctgtttgtctgtctctctctgtctctctctctgtctgtctgtctctgtctgtctctctcgctctctcgctc

Function

NR:

description
regulator of G-protein signaling rgs-7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971670.1 True 2143 mRNA 0.53 5 8410404 8420764

Neighbor

gene id symbol gene type direction distance location
LOC110487863 LOC106569297 coding upstream 208044 8197381 ~ 8202360 (+)
e2f3 LOC106570699 coding upstream 490954 7897661 ~ 7920212 (+)
LOC118946479 NA coding upstream 530828 7878210 ~ 7881862 (+)
LOC110489363 LOC106589070 coding upstream 564088 7801891 ~ 7846316 (+)
LOC110487859 LOC106570693 coding upstream 819604 7571850 ~ 7590800 (+)
tnfa LOC100136509 coding downstream 82860 8503624 ~ 8506000 (+)
LOC118946524 uap56 coding downstream 406146 8826910 ~ 8833518 (+)
LOC110487872 LOC106570657 coding downstream 470875 8891639 ~ 8896196 (+)
LOC110489365 LOC106570660 coding downstream 486686 8907450 ~ 8934029 (+)
LOC110487875 LOC106570662 coding downstream 513366 8934130 ~ 8942477 (+)
G2293725 NA non-coding upstream 6039 8404158 ~ 8404365 (+)
G2293695 NA non-coding upstream 36944 8368618 ~ 8373460 (+)
G2293696 NA non-coding upstream 40995 8369014 ~ 8369409 (+)
G2293688 NA non-coding upstream 49696 8360468 ~ 8360708 (+)
G2293657 NA non-coding upstream 77088 8333025 ~ 8333316 (+)
G2293738 NA non-coding downstream 5139 8425903 ~ 8426616 (+)
G2293746 NA non-coding downstream 18899 8439663 ~ 8440047 (+)
G2293828 NA non-coding downstream 89511 8510275 ~ 8510600 (+)
G2293829 NA non-coding downstream 90108 8510872 ~ 8511770 (+)
G2293831 LOC106570681 non-coding downstream 91142 8511906 ~ 8515666 (+)
G2293677 NA other upstream 59721 8350213 ~ 8350683 (+)
G2293464 NA other upstream 304395 8105628 ~ 8106009 (+)
G2293430 NA other upstream 332023 8075687 ~ 8078381 (+)
G2293172 NA other upstream 562942 7846541 ~ 7847462 (+)
G2293942 NA other downstream 370337 8791101 ~ 8876464 (+)
G2293943 LOC106570655 other downstream 423249 8844013 ~ 8847252 (+)
G2294081 NA other downstream 674028 9094792 ~ 9103186 (+)
G2294452 LOC106570648 other downstream 914571 9335335 ~ 9337755 (+)

Expression


Co-expression Network