tnfa (LOC100136509)


Basic Information

Item Value
gene id tnfa
gene name LOC100136509
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 8503624 ~ 8506000 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971683.1
GCAGGAGCATCACTACCTTCAAAACAACCTCTAATAAGACTGCTGGAGTTTAGCACTACATTTTTATAAACTTCTAGACCGCAAAAGAGCTGAACTGGTACTTGAACTCTCTTCGAATACTGCCTTGGGTTAAGTAGGTAAAGGAAGTCTCTACTCCGGGATCCGCAGAAAGTTCTAGTAAAACGATGGAAGGTGATTGCAGCAGAGTGACGGTGGACTTGGAGAATGGCCCTGTGTCACCGACCGTGACCCTGGTGCGGGAGAAGTCCACACAACGTTGGAGGCTGTGTGGTGCCCTGCTGGCCATGGCGCTGTGTGTCTCAGCTGCACTCTTCTTTACCAAGAAACAAGATCACATCGAGAAAGCTGATGaAATTCAGCATACCCTGAGACAACTCTCTGGAAACATAAAGGCTGCCATTCATTTAGAAGGTGAATACAACACCTATGGTGATTACAAGTCCTCAGTGGAGTGGACAGATGACGAGGGCCAGGGATTCTCACAGGGGGGTCTTAAACTCAACAACAACGAAATTGTTATTCCCCAGATGGGCCTCTACTTTATCTACAGCCAGGTCTCTTTCCACGTCAGCTGCAAGGCCGACCCCAAGCACCCTAACAACCAGGACATGGTTCACCTGAGTAACACGGTCACGCGCTGGTCCCCAAGCTACGGCACCGAAGACAACAAGCAGTACCAGCCGCTGCTCAACTCTGTACGCACCGTGTGTAAGAAGTCTTCCAACGGCGAGGCTGCGAGTGAAGGAAAATGGTATAACGCCGTGTACATGGGAGCCGTGTTCAGCCTGGAGAAGGGAGACAGGCTCCGGACAGTCACAGAGAACAGGCTTCTGCCCCATCTGGAGAGTGGCGCTGGGAAGAACTTCTTCGGCGTGTTCGCCTTGTAAAGACAGACAAAAATGGCTGACGACAGAGGGGGGTAGGCTACGTCGTAAATGCCGACCTACTCCCTACACTTTGTTGACAAGAGCTCTATGGGTGAattatatacagggaataggccACCATTTGGGATTCAGGCCACAGTGTGAAGGGAAAGATTCAACTtttggaggaggggggaggggggggg

Function

NR:

description
TNF-alpha3 isoform-2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971683.1 True 1093 mRNA 0.51 4 8503624 8506000

Neighbor

gene id symbol gene type direction distance location
si:ch211-152p11.4 LOC106570678 coding upstream 82860 8410404 ~ 8420764 (+)
LOC110487863 LOC106569297 coding upstream 301264 8197381 ~ 8202360 (+)
e2f3 LOC106570699 coding upstream 584174 7897661 ~ 7920212 (+)
LOC118946479 NA coding upstream 624048 7878210 ~ 7881862 (+)
LOC110489363 LOC106589070 coding upstream 657308 7801891 ~ 7846316 (+)
LOC118946524 uap56 coding downstream 320910 8826910 ~ 8833518 (+)
LOC110487872 LOC106570657 coding downstream 385639 8891639 ~ 8896196 (+)
LOC110489365 LOC106570660 coding downstream 401450 8907450 ~ 8934029 (+)
LOC110487875 LOC106570662 coding downstream 428130 8934130 ~ 8942477 (+)
stx12 LOC106570663 coding downstream 436998 8942998 ~ 8954950 (+)
G2293746 NA non-coding upstream 63577 8439663 ~ 8440047 (+)
G2293738 NA non-coding upstream 77008 8425903 ~ 8426616 (+)
G2293725 NA non-coding upstream 99259 8404158 ~ 8404365 (+)
G2293695 NA non-coding upstream 130164 8368618 ~ 8373460 (+)
G2293696 NA non-coding upstream 134215 8369014 ~ 8369409 (+)
G2293828 NA non-coding downstream 4275 8510275 ~ 8510600 (+)
G2293829 NA non-coding downstream 4872 8510872 ~ 8511770 (+)
G2293831 LOC106570681 non-coding downstream 5906 8511906 ~ 8515666 (+)
G2293853 NA non-coding downstream 66515 8572515 ~ 8573927 (+)
G2293884 NA non-coding downstream 123556 8629556 ~ 8630685 (+)
G2293677 NA other upstream 152941 8350213 ~ 8350683 (+)
G2293464 NA other upstream 397615 8105628 ~ 8106009 (+)
G2293430 NA other upstream 425243 8075687 ~ 8078381 (+)
G2293172 NA other upstream 656162 7846541 ~ 7847462 (+)
G2293942 NA other downstream 285101 8791101 ~ 8876464 (+)
G2293943 LOC106570655 other downstream 338013 8844013 ~ 8847252 (+)
G2294081 NA other downstream 588792 9094792 ~ 9103186 (+)
G2294452 LOC106570648 other downstream 829335 9335335 ~ 9337755 (+)

Expression


Co-expression Network