LOC118946524 (uap56)


Basic Information

Item Value
gene id LOC118946524
gene name uap56
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 8826910 ~ 8833518 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118946524
CCAGGGGGCAATGTTCTTTGGTGGCCTGTCTATAAAGAAGATTGAGGAGGTGTTGAAGAGGGAGTGTCCCCATGTGGTGGTGGGGTCGCCAGGGTGAATCCTTGCCCTGATCCGCAACAAGACCCTCAACCTACCACACATCAAACACTTCATCCTGGACGAGTGTGACAAGATGCTGGAGCAACTAGACATGCACAGAGACGTCCAAGAGATACTCCGTCTGAACCGCCCATGAGAAACAGGTCATGATGTTCAGCGAAGAGATCCGCAAAGAGATCCGCCCCATCTGCCGAAAGTTCATGCAACAGCCGATGGAAATCTTTGTTGATGATGAGACCAAGCTGACTCTCCACGGGCTGCAGCAATGAGAAACTGAAGGACAAGGAGAAGAACAGTTAGCTCTTTGATCTCCTCAACGTGCTGGAGTTCAACCAGGTACTGTAA

Function

symbol description
uap56 ATP-dependent RNA helicase UAP56/SUB2

NR:

description
Spliceosome RNA helicase BAT1

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118946524 True 444 mRNA 0.51 3 8826910 8833518

Neighbor

gene id symbol gene type direction distance location
tnfa LOC100136509 coding upstream 320910 8503624 ~ 8506000 (+)
si:ch211-152p11.4 LOC106570678 coding upstream 406146 8410404 ~ 8420764 (+)
LOC110487863 LOC106569297 coding upstream 624550 8197381 ~ 8202360 (+)
e2f3 LOC106570699 coding upstream 907460 7897661 ~ 7920212 (+)
LOC118946479 NA coding upstream 947334 7878210 ~ 7881862 (+)
LOC110487872 LOC106570657 coding downstream 58121 8891639 ~ 8896196 (+)
LOC110489365 LOC106570660 coding downstream 73932 8907450 ~ 8934029 (+)
LOC110487875 LOC106570662 coding downstream 100612 8934130 ~ 8942477 (+)
stx12 LOC106570663 coding downstream 109480 8942998 ~ 8954950 (+)
LOC110487879 LOC106570673 coding downstream 172129 9005647 ~ 9019469 (+)
G2293901 NA non-coding upstream 114937 8711625 ~ 8711973 (+)
G2293900 NA non-coding upstream 119227 8705982 ~ 8707683 (+)
G2293884 NA non-coding upstream 196225 8629556 ~ 8630685 (+)
G2293853 NA non-coding upstream 252983 8572515 ~ 8573927 (+)
G2293831 LOC106570681 non-coding upstream 311244 8511906 ~ 8515666 (+)
G2293988 NA non-coding downstream 14406 8847924 ~ 8848431 (+)
G2294000 NA non-coding downstream 73043 8906561 ~ 8906828 (+)
G2294001 NA non-coding downstream 73321 8906839 ~ 8907137 (+)
G2294046 NA non-coding downstream 188012 9021530 ~ 9021761 (+)
G2293942 NA other upstream 31408 8791101 ~ 8876464 (+)
G2293829 NA other upstream 315169 8510872 ~ 8511770 (+)
G2293677 NA other upstream 476227 8350213 ~ 8350683 (+)
G2293464 NA other upstream 720901 8105628 ~ 8106009 (+)
G2293430 NA other upstream 748529 8075687 ~ 8078381 (+)
G2293943 LOC106570655 other downstream 10495 8844013 ~ 8847252 (+)
G2294081 NA other downstream 261274 9094792 ~ 9103186 (+)
G2294452 LOC106570648 other downstream 501817 9335335 ~ 9337755 (+)
G2294925 NA other downstream 1296598 10130116 ~ 10131651 (+)
LOC118946540 NA other downstream 1485334 10318805 ~ 10323588 (+)

Expression


Co-expression Network