Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110489366 |
| gene name | LOC105012323 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_050572.1 |
| NCBI id | CM025859.1 |
| chromosome length | 41837469 |
| location | 9046596 ~ 9162941 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036970783.1 | False | 4945 | mRNA | 0.49 | 22 | 9046596 | 9162496 |
| XM_036970784.1 | False | 4942 | mRNA | 0.49 | 22 | 9046596 | 9162496 |
| XM_036970785.1 | False | 4942 | mRNA | 0.49 | 22 | 9046596 | 9162496 |
| XM_036970787.1 | False | 4933 | mRNA | 0.49 | 22 | 9046596 | 9162496 |
| XM_036970788.1 | False | 4900 | mRNA | 0.49 | 21 | 9046596 | 9162496 |
| XM_036970789.1 | False | 4891 | mRNA | 0.48 | 23 | 9046596 | 9162496 |
| XM_036970790.1 | False | 4882 | mRNA | 0.49 | 21 | 9046596 | 9162496 |
| XM_036970791.1 | False | 4879 | mRNA | 0.49 | 21 | 9046596 | 9162496 |
| XM_036970793.1 | False | 4831 | mRNA | 0.49 | 20 | 9046596 | 9162496 |
| XM_036970794.1 | False | 4747 | mRNA | 0.48 | 19 | 9046596 | 9162496 |
| TU2623884 | False | 347 | lncRNA | 0.39 | 1 | 9046620 | 9046966 |
| TU2623870 | False | 2705 | lncRNA | 0.39 | 4 | 9155408 | 9162941 |
| TU2623853 | False | 1472 | lncRNA | 0.37 | 2 | 9161386 | 9162941 |
| TU2623858 | False | 1454 | lncRNA | 0.37 | 2 | 9161386 | 9162941 |
| TU2623859 | False | 1448 | lncRNA | 0.37 | 2 | 9161386 | 9162941 |
| TU2623862 | False | 1432 | lncRNA | 0.37 | 2 | 9161386 | 9162941 |
| TU2623863 | False | 1428 | lncRNA | 0.37 | 2 | 9161386 | 9162941 |
| TU2623866 | True | 1408 | lncRNA | 0.36 | 2 | 9161386 | 9162941 |
9,000,000
9,020,000
9,040,000
9,060,000
9,080,000
9,100,000
9,120,000
9,140,000
9,160,000
9,180,000
9,200,000
9,220,000
NC_050572.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110487879 | LOC106570673 | coding | upstream | 27127 | 9005647 ~ 9019469 (+) |
| stx12 | LOC106570663 | coding | upstream | 91646 | 8942998 ~ 8954950 (+) |
| LOC110487875 | LOC106570662 | coding | upstream | 104119 | 8934130 ~ 8942477 (+) |
| LOC110489365 | LOC106570660 | coding | upstream | 112567 | 8907450 ~ 8934029 (+) |
| LOC110487872 | LOC106570657 | coding | upstream | 150400 | 8891639 ~ 8896196 (+) |
| LOC118946539 | NA | coding | downstream | 161844 | 9324340 ~ 9325002 (+) |
| trnap-agg-161 | NA | coding | downstream | 191321 | 9353817 ~ 9353888 (+) |
| trnap-agg-163 | NA | coding | downstream | 194595 | 9357091 ~ 9357162 (+) |
| trnap-agg-165 | NA | coding | downstream | 200553 | 9363049 ~ 9363120 (+) |
| trnap-agg-167 | NA | coding | downstream | 203827 | 9366323 ~ 9366394 (+) |
| G2294058 | NA | non-coding | upstream | 8191 | 9038196 ~ 9038405 (+) |
| G2294051 | NA | non-coding | upstream | 18468 | 9027784 ~ 9028128 (+) |
| G2294046 | NA | non-coding | upstream | 24835 | 9021530 ~ 9021761 (+) |
| G2294001 | NA | non-coding | upstream | 139459 | 8906839 ~ 8907137 (+) |
| G2294410 | NA | non-coding | downstream | 88574 | 9251070 ~ 9251285 (+) |
| G2294412 | NA | non-coding | downstream | 89051 | 9251547 ~ 9251752 (+) |
| G2294421 | NA | non-coding | downstream | 104260 | 9266756 ~ 9268052 (+) |
| G2294448 | NA | non-coding | downstream | 164954 | 9327450 ~ 9328654 (+) |
| G2294449 | NA | non-coding | downstream | 167763 | 9330259 ~ 9330708 (+) |
| G2293943 | LOC106570655 | other | upstream | 199344 | 8844013 ~ 8847252 (+) |
| G2293942 | NA | other | upstream | 251094 | 8791101 ~ 8876464 (+) |
| G2293829 | NA | other | upstream | 534855 | 8510872 ~ 8511770 (+) |
| G2293677 | NA | other | upstream | 695913 | 8350213 ~ 8350683 (+) |
| G2293464 | NA | other | upstream | 940587 | 8105628 ~ 8106009 (+) |
| G2294452 | LOC106570648 | other | downstream | 172839 | 9335335 ~ 9337755 (+) |
| G2294925 | NA | other | downstream | 967620 | 10130116 ~ 10131651 (+) |
| LOC118946540 | NA | other | downstream | 1156356 | 10318805 ~ 10323588 (+) |
| LOC110487904 | snrpd1 | other | downstream | 1352458 | 10509464 ~ 10521398 (+) |
| G2296150 | LOC106570575 | other | downstream | 2122997 | 11285493 ~ 11290303 (+) |
