trnap-agg-172


Basic Information

Item Value
gene id trnap-agg-172
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 9378892 ~ 9379108 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnap-agg-172
ggctcgttggtctaggggtatgattctcgcttagggtgcgagaggtcccgggttcaaatcccggacgagccc
>TU2624390
gtatgattctcgcttagggtgcgagaggtcccgggttcaaatcccggacgagcccgtCTTTTAATGTGTCAATGGAAAACGATGTAGAAATTCTGATCAGCAATCATTTGACCAAAGCCTCCCACCACCACCTGAAAAGTTTCTTCCCCTgggctgtggccctcaccaacaggaaatctggcccatagagactgaaGGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnap-agg-172 False 72 mRNA 0.61 1 9378892 9378963
TU2624390 True 200 lncRNA 0.51 1 9378909 9379108

Neighbor

gene id symbol gene type direction distance location
trnap-agg-170 NA coding upstream 3276 9375545 ~ 9375616 (+)
trnap-agg-167 NA coding upstream 12498 9366323 ~ 9366394 (+)
trnap-agg-165 NA coding upstream 15772 9363049 ~ 9363120 (+)
trnap-agg-163 NA coding upstream 21730 9357091 ~ 9357162 (+)
trnap-agg-161 NA coding upstream 25004 9353817 ~ 9353888 (+)
LOC110487882 LOC106570647 coding downstream 3764 9382727 ~ 9386344 (+)
LOC110487883 LOC106570652 coding downstream 31350 9410313 ~ 9429688 (+)
LOC110489367 LOC106570646 coding downstream 110831 9489794 ~ 9532662 (+)
cck-t cck-t coding downstream 189089 9568052 ~ 9573780 (+)
LOC110487884 LOC106570642 coding downstream 243064 9622027 ~ 9624695 (+)
G2294458 NA non-coding upstream 31578 9346818 ~ 9347314 (+)
G2294457 NA non-coding upstream 33814 9344761 ~ 9345078 (+)
G2294449 NA non-coding upstream 48184 9330259 ~ 9330708 (+)
G2294448 NA non-coding upstream 50238 9327450 ~ 9328654 (+)
G2294421 NA non-coding upstream 110840 9266756 ~ 9268052 (+)
G2294462 NA non-coding downstream 1891 9380854 ~ 9381293 (+)
G2294472 NA non-coding downstream 30879 9409842 ~ 9410070 (+)
G2294440 NA non-coding downstream 55085 9434048 ~ 9435450 (+)
G2294479 NA non-coding downstream 57483 9436446 ~ 9436764 (+)
G2294480 NA non-coding downstream 58467 9437430 ~ 9438504 (+)
G2294452 LOC106570648 other upstream 41137 9335335 ~ 9337755 (+)
G2294081 NA other upstream 275706 9094792 ~ 9103186 (+)
G2293943 LOC106570655 other upstream 531640 8844013 ~ 8847252 (+)
G2293942 NA other upstream 583390 8791101 ~ 8876464 (+)
G2293829 NA other upstream 867151 8510872 ~ 8511770 (+)
G2294925 NA other downstream 751153 10130116 ~ 10131651 (+)
LOC118946540 NA other downstream 939889 10318805 ~ 10323588 (+)
LOC110487904 snrpd1 other downstream 1135991 10509464 ~ 10521398 (+)
G2296150 LOC106570575 other downstream 1906530 11285493 ~ 11290303 (+)
G2296278 NA other downstream 2184584 11563547 ~ 11564590 (+)

Expression


Co-expression Network