LOC110489367 (LOC106570646)


Basic Information

Item Value
gene id LOC110489367
gene name LOC106570646
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 9489794 ~ 9532662 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971409.1
AGAACCGTACGGAGAGCACGGCCAGCGGTAGGAGCGCAtcgggttgtgtgtgtggtgtggtgtgtttataTTTTATACCCCGTTTATCAGAACGGAAAATAGAACTACAGACAGCCCGATTGGGCCTACAAATTTGTTTTAAACCAACATTTTGATTGGCGTTCCGTTTGGCTCATGCGATTGAAGGGGCTCGTGCCTTTCCCCCTCAAGGTTCCAGAGAGGCGCGTGGAAAAGCCCTGTGCAGAGAAAGAAGGGGGATCATAGCGTATGTACGTAGCCTAAATGCATACATGCCGGGGTCTACGACTGTGTGGTTTTAAAAACGGAGACGGGTGTGTTTATTTTGTCGGCAAACGGCAATGAGTGGCAATGAGATCGGGTTGCTGGTGAGCCAGTGCTTTGATGAATAATTTACGGTCTTGTGGTCCGAAAGGGAGCGAACCACAGCCACTGCCGTTTGTAAACCTCTGAAGACGTCGGAGAGGGCCCGGATGGTGGACTAGAGAGAGCCGACAAAACGGGTCTGAAACGGGACTAGGTATTTTGACATTGTCGGTAAATTCATTAGGGGCGGTGAGAAGGGGTGATGGTGtgtcggaggaggaggagagaaggagcttTGGGCACCTTGCGGAGGATCATATACAAACTCTGTTTTCGGATTATTCTCAAACCCCGCCACTTCTAAACCACAACAAACAAATCAAAACTAATCTCAGTCAACTCTAAATTACTATTTTCGACATGCGCTCATTTAAATAGTCCATCCAAGTAACAATAGAATAGGTGTATGTAAAGTTGACTATCATTGTAATGAATAGTGAGTAGTCGGTAGTTCTAAAGCTTCATCCAAGTTTAGAGATTGAATCATTGTGAACTGAAATGAATATTGCACATTTGATTTTCTATAGGAGAATCTTTAAAAATCATGCGATACAGAATTTTAAAAGGGCGTTTCTCTCGGCCTGCATCTGCATATCTGGCGTCAGTTGAGGGTTATGTTTAGGAGAGAACACTTACAGGCCTATCCTATGTGGACCATTTTGACAAATGTTtacttaacaaaaaaaaaacaacatatctacctcaaaccTCTGCCTGTTTTCCACAGAACACAACTGGAGAAACGACCAAATGTTTACTAAATGAATACCTCAGTCTCACTAATACCTCGTAGGTTCTTTATAAAGCGTAGCCTTGTTTAAAACGCCTCCGATGGCTTTGTTCTCAGACTCCGACCTGCAGACCTGTCTTCTCTGCAAGGAACTCTGTGGCTCCTCCTCCGCTACCATCTCCTGCAActcctccacttcctcttcctcctctcactcgtcctcctcttcctcccggCGCCTCCATGTCCTCCCCTGCCTGCACACCTTCTGCAGACAGTGTCTGGAGGGGCAGCGCAGTCATGGGGACCCTCTCAAACTCAGCTGCCCCACCTGCAACCAGAAGGTCTCCATCTCCGAGGCTGGAGTggactctctcccttcctccaacTTCCTCTTGAGTAACCTTCTGGACTCGGAGCAGCTCCAACTCGGCCAAAATAAGAACGGTCACCGGGGGGTCAGCGGGTGCTCCGTACCCAGGTTCCACCGCGCCCACAGCGTGCTCCACCCAAACCGTCTGGGAGGGCCCCAGTGCAGCTCCTGTGGCGAGGGGGACCCGGCCAGCTTCCACTGCCTGGACTGCCAGGAGTACCTTTGTGATAACTGTGTCCGAGCCCATCAGAGGGTCCGGTTGACCAAGGACCACTTCATGGAGAGCCTGCAGCATGCAAGCCAAGGCTTGGCCAGCCCCATCGCAGGTAGAGGCAGGGGGGTTGGGGGAGGTGTAGggttgtccctgacccagcccttcCAGTCCAACTCCTCCCTGCTGCCTTTGTTCCAGGATAGGATGAGCTTCTGTCAGCACCATGACAACAAGGTGTTTCTGTTTTTCTGTGAGACGTGCTCTGTGCCTATCTGTAGGGAGTGTAGTGTGGGCAGACACATGGGCCACAGCTTGGTCTATCTACAGGACGCTGTCCAGGACTCCAGAGACATCATCATCCAGCTACTGGCCGACGCACAGCAAGGAAGACAGGCTGTACAGTTAAGTATGGAGAAGATCCAGGCCATAGCAGAGCAGGTAGACATCAAGGCCAAGGTGGTCCAGACAGAGGTGAAGAACGTGGTCCTCAGACACCTGAAAGCtttggaggacagagagagtcagCTACTCTGGAAGgttGAGAAGATCCAACAGCTGAAAGCCAAGTCCCTGTACCTGCAGATAGAGAAACTGCATCAGAACCTGACCAAGCTCGACAGCACCATCACAGCAGTCACTCAGGTGCTGGATGAGGGTTGTCACCTGGACGTGCTGCTGGCCAGAGAGCGCATGCTGACCCAGATCCAGGAGCTGAAGTCTCTCAGAGGCCTGCTGCAGCCACAGGAGGATGATCGTTTAATGTTCACCCCTCCAGAACAGGCCCTGTACATAGCCATCCAGTCCATGGGGTTGATCAGTAGCGGAGCGTTCGCTCCCGTCACCAAAGCTCACGGCGAGGGCCTAAAGACCGCACTCCGTGGCAAGACCGCCTCCTTCACCGTAATTGGCTACGACCACGACAGGGAGCCCTGCCTCTCGGGCGGTGACGCAGTGTCAGCGGTGGTGATGGCAGCGGCGGATGGTAACCTGTCGGCTGCGGAGGTGTGTGACAACCAGAACGGGTCGTACACGGTCAGCTACTTACCCAAGACTGAGGGAGAAGATTTGGTGTCAGTTCTGGTCTGTAACCAGCACATCATGGGCAGCCCCTTCAAGGTACTGGTGAAGTCTGGGCGACGCTACGGGGCTCTGGGTTCACCGGTGTCTACGTTTGGCAGTGAGGGGGAGGGTGACGGTCAGCTGTGTCGTCCCTGGGGCATCAGTGTGGACAAAGAGGGATATGTGGTGGTGGCCGACCGCAGTAACAACCGCGTACAGATCTTCAAGCCGTGCGGTGCCTTCCACCACAAGTTTGGCTCCCTGGGCTCTCGCCCCGGTCAGTTTGATCGTCCAGCGGGTGTGGCGTGCGACAGCCAACAGCAGATCATCGTAACGGACAAAGACAACCACCGTGTGCAGGTGTTCACCTTTGACGGACAGTTTATGCTGAAGTTCGGCGAGAAGGGCACTAAGAACGGTCAGTTCAACTACCCCTGGGATGTGGCAGTGAACTCTGCGGGGAAGATCTTGGTCTCTGACACCAGGAACCACCGCGTCCAGCTCTTTGGCCCTGACGGCTCGTTCATCAACAAGTATGGCTTTGAGGGCACCCTGTGGAAACACTTTGACTCGCCGCGGGGTGTCGCCTTTAACCATGAGGACCACCTGGTCGTCACCGACTTCAACAACCACCGTCTGCTGGTGATTCGGCCAGATTGCCAATCTGCCCGGTTCCTGGGCTCCGAGGGTACCGGTAACGGGAAGTTCCTGCGTCCCCAGGGCATAGCGGTGGACCAGGAGAACCGGATCATCGTTGCCGACTCGAGGAACCACCGTGTGCAGGTGTTCGAGCCCAACGGGAACTTCTTATGCAAATTTGGCACCCATGGCAGTGGCTTCGGACAGATGGACCGCCCCTCCGGTGTTGCCGTGACGCCTGACGGAGTCATCGTGGTCGTCGACTTCGGAAACAACCGCATCCTCAAGTTCTAATCGCttttcgctttctttctctcgctctgttttcTCTCCGTTTCTCTGTTAGGGAGAGGAAATTGAAGAGCTAGGAAAAGGATTCAACAAACAGACACAAAGAGGACAGTTTAAAGAGAGATAATCAGGGCAGGTAGAAATGCGTTATTACAAATTAAGGGGAAGTGAATTTGTTcgtttttaaattattattatttttttaggtTTTAGTTTGTGTAATCAGATTCCTGTGGTATACTGTATGACAACGGGGACCACTAAGACTAGTTGATAATCAGTAGTGAAAGTAACAAGGAAGAGATCACGATTTCCCTCTCTTCTATCTGAATTGCTCTCTCTCAACTCTCATCACGTCGCCTTCTCAGGGATATTTCTCACTTTTTCTTGAAATATTGAATCCTCTGCTCCGCCACCTACCTCAACCAGTTCTTAATGAATGTACTCACCCTCTCCGAGCAGAGGTCTACTCTAAGTCTGTCAAGTTTTAcaaagaagaaaataaaaaaggtCTACCtcaa

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIM71-like

GO: NA

KEGG:

id description
K12035 TRIM71; tripartite motif-containing protein 71

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971409.1 True 4211 mRNA 0.52 9 9489794 9532662

Neighbor

gene id symbol gene type direction distance location
LOC110487883 LOC106570652 coding upstream 60106 9410313 ~ 9429688 (+)
LOC110487882 LOC106570647 coding upstream 103450 9382727 ~ 9386344 (+)
trnap-agg-172 NA coding upstream 110831 9378892 ~ 9379108 (+)
trnap-agg-170 NA coding upstream 114178 9375545 ~ 9375616 (+)
trnap-agg-167 NA coding upstream 123400 9366323 ~ 9366394 (+)
cck-t cck-t coding downstream 35390 9568052 ~ 9573780 (+)
LOC110487884 LOC106570642 coding downstream 89365 9622027 ~ 9624695 (+)
LOC110487893 LOC106570636 coding downstream 516534 10049196 ~ 10064026 (+)
LOC118946535 NA coding downstream 558641 10091303 ~ 10092528 (+)
LOC118946540 NA coding downstream 789371 10318805 ~ 10323588 (+)
G2294583 NA non-coding upstream 7752 9480982 ~ 9482042 (+)
G2294582 NA non-coding upstream 13077 9472534 ~ 9476717 (+)
G2294579 NA non-coding upstream 19777 9469550 ~ 9470017 (+)
G2294487 NA non-coding upstream 26786 9462690 ~ 9463008 (+)
G2294486 NA non-coding upstream 27692 9461482 ~ 9462102 (+)
G2294632 NA non-coding downstream 6964 9539626 ~ 9540594 (+)
G2294636 NA non-coding downstream 16703 9549365 ~ 9555141 (+)
G2294649 NA non-coding downstream 51638 9584300 ~ 9585186 (+)
G2294661 NA non-coding downstream 85349 9618011 ~ 9618226 (+)
G2294664 NA non-coding downstream 92607 9625269 ~ 9625484 (+)
G2294452 LOC106570648 other upstream 152039 9335335 ~ 9337755 (+)
G2294081 NA other upstream 386608 9094792 ~ 9103186 (+)
G2293943 LOC106570655 other upstream 642542 8844013 ~ 8847252 (+)
G2293942 NA other upstream 694292 8791101 ~ 8876464 (+)
G2293829 NA other upstream 978053 8510872 ~ 8511770 (+)
G2294925 NA other downstream 597454 10130116 ~ 10131651 (+)
LOC110487904 snrpd1 other downstream 982292 10509464 ~ 10521398 (+)
G2296150 LOC106570575 other downstream 1752831 11285493 ~ 11290303 (+)
G2296278 NA other downstream 2030885 11563547 ~ 11564590 (+)

Expression


Co-expression Network