cck-t (cck-t)


Basic Information

Item Value
gene id cck-t
gene name cck-t
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 9568052 ~ 9573780 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124344.1
tcctccaacactctctctctgtctccatctctttaCTGAAGatGACTGcagggttgtgtatgtgtgttctgcTGGTGGTCCTGTGCACTAGCTGTTCAGGACGCACACACTTCTCTCCAAACCTCCAAGAGGGCAGCCCTGCCCTGCCCCCTCCCTCTGAAGCACGTCTGGAAACCAAAGCCCACTTCCTCTCCGAGCCATACCTCAGACATACTCACTCCTCTCCTTTGGTCAATACCAAGCCATATATGGGAGAAGGCAGAAACTCCAGAGCCAAACTCAGTGAACTGTTGGCTAGACTCATCTCCTCACAGAAAGGTTACATCAGTGGGAACTCAACAGTGAACAGCAGAGCCAGCGGTCTCAGTGCTAACCACCTGATAAAAAACAGAGACTACACCGGGTGGATGGACTTTGGCCGCCGCAGCGCAGAAGAAAACGAGCACTCCTTGTAGAAAAGTAGTCCCTCCCTACAAGAAAAGAACAAGTCACTGTCTCGTCATGAGAGTGTATTTATTCTGTATTTGATGTACATTTGTTTGTAAACACTATATGATGCAATATACAGCATCTACAGTGACAAG

Function

NR:

description
cholecystokinin (Thr) precursor

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124344.1 True 584 mRNA 0.48 4 9568052 9573780

Neighbor

gene id symbol gene type direction distance location
LOC110489367 LOC106570646 coding upstream 35390 9489794 ~ 9532662 (+)
LOC110487883 LOC106570652 coding upstream 138364 9410313 ~ 9429688 (+)
LOC110487882 LOC106570647 coding upstream 181708 9382727 ~ 9386344 (+)
trnap-agg-172 NA coding upstream 189089 9378892 ~ 9379108 (+)
trnap-agg-170 NA coding upstream 192436 9375545 ~ 9375616 (+)
LOC110487884 LOC106570642 coding downstream 48247 9622027 ~ 9624695 (+)
LOC110487893 LOC106570636 coding downstream 475416 10049196 ~ 10064026 (+)
LOC118946535 NA coding downstream 517523 10091303 ~ 10092528 (+)
LOC118946540 NA coding downstream 748253 10318805 ~ 10323588 (+)
LOC110513484 LOC106570612 coding downstream 830592 10404372 ~ 10427604 (+)
G2294636 NA non-coding upstream 12911 9549365 ~ 9555141 (+)
G2294632 NA non-coding upstream 27458 9539626 ~ 9540594 (+)
G2294619 NA non-coding upstream 59335 9508277 ~ 9508717 (+)
G2294613 NA non-coding upstream 69759 9497924 ~ 9498293 (+)
G2294608 NA non-coding upstream 75191 9492661 ~ 9492861 (+)
G2294649 NA non-coding downstream 10520 9584300 ~ 9585186 (+)
G2294661 NA non-coding downstream 44231 9618011 ~ 9618226 (+)
G2294664 NA non-coding downstream 51489 9625269 ~ 9625484 (+)
G2294599 NA non-coding downstream 54423 9628203 ~ 9630099 (+)
G2294605 NA non-coding downstream 56437 9630217 ~ 9633050 (+)
G2294452 LOC106570648 other upstream 230297 9335335 ~ 9337755 (+)
G2294081 NA other upstream 464866 9094792 ~ 9103186 (+)
G2293943 LOC106570655 other upstream 720800 8844013 ~ 8847252 (+)
G2293942 NA other upstream 772550 8791101 ~ 8876464 (+)
G2293829 NA other upstream 1056311 8510872 ~ 8511770 (+)
G2294925 NA other downstream 556336 10130116 ~ 10131651 (+)
LOC110487904 snrpd1 other downstream 941174 10509464 ~ 10521398 (+)
G2296150 LOC106570575 other downstream 1711713 11285493 ~ 11290303 (+)
G2296278 NA other downstream 1989767 11563547 ~ 11564590 (+)

Expression


Co-expression Network