LOC110487884 (LOC106570642)


Basic Information

Item Value
gene id LOC110487884
gene name LOC106570642
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 9622027 ~ 9624695 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971715.1
CACCAACCCGGAGAAACTGAGAATATGTTATTATTACTCTGATGGGGACAGTCAGACAAGCCTTTTCTGAGATATAACCAACCATCGATATACCGATACACCGAGACACAAGGACAGCATCACGGCATCACTGTCTCCTGAATACACCGTGAACAGAGCTGATTTGGAAGAATCGTGATCAAGGTATTTTTATCAATAGAAGgtgtggTGTGTTTGACCCATAATGACCCAAAATGACTCTGACGTCTGGTTCGAGGAGTCTTCAGGTTCAGGGATGTCTTCACCTCTTTCCCTGCTGGACCAATCAGATCCCACGGCCGTGCCTGAGGCCTCTCCTCTCAGCCTATGGGGAGTGGCACTGTGCGTATCGGGAACTCTCATCGTGTCCGAAAACGCCATCGTAGTGGCTGCCATCTTGGCTACGCCTTCTCTCCGTGCTCCTGTCTTCCTACTCCTCGCCAGCCTGGCATTAGCCGACCTGCTGGCGGGCGTGGCCTTGATCCTCCACTTCCTCTTCCTGTTTTGTGTGGAGCCCACTGATTGGTCGGAGCTGATGACGTCAGGGTTGCTGGCGACATCACTGACGGCCTCCCTCCTCAGCCTGATGGGTGTGGCCCTGGATCGTTACCTGTCTCTAAGCCAAGCCCTCACCTACGGCTCCCGCCACTCGCGCCGCTGTGCCGCTGGTCTTCTGGCACTCGTCTGGCTGGGGTCTTGTCTGATTGGCTCGGGGCCGGTGCTGGGGTGGCACTGCCTCAATGACATCACATCCTGTTCCGTTGCGCGACCCCTGACCCGGACATACCTGTCGTTGCTCTGCGGCGGCTTCCTTCTGGTCGTCATGGTCACGCTGCAGCTGTACACCGGGATATGCCGTGTCGCAAGGAGGCACGCCCACGCCATCGCCACGCAGAGACACTTCCTGCCTGACGACCAATCGTATGCCAGCAAGCACGGGGGCCGGGGTAAGGGACTCTCTCGGCTGTTGTTAGTCCTCGGAGTGTTCGTCAGCTGCTGGACGCCCTTCGCCCTCTACGGTTTGCTGGGCGACGCATCTAGCTCGCCCTTGTATACGTACGCTACGCTAGTGCCGGCGGCAGGGAACTCTCTGCTCAACCCTCTGCTGTATAGCCTGAGGAACAGAGACATACGACTGGTGCTGCTGCATGCCTGCTGTCctcacagacacaacacacacaggccTGTTGATGTGtaggatggacacacacacacacacacacacacacacacagctacattgACTGCCCCATATACGTGAAAAATCAAAAGAGAACATCATCATCACTTGCACTCCAGATAAGAAGCAATGAGAATGTACTGTTCCAGAAGACAGCCATCTTGGAATCAGCTGGAATCAAATGTGACGTACTGTATCATCTTAACATGTGCCTCATCCTCACCTAACATGTAGACCATCCAGTCTGATGCAATCACAGAGGTCCAACGTAATTCATCTGGATCCAACATATTTGCTTTAGGAGCACGGGAAAGTGGGTCTATACAATGATACTATTATAAGATATTATTTTATAAGCCTTTGGATGGTTTGTTGGGACTTATATACTATGCTGCTGTCGGTGAACTCCAGAACACTTAGAAAGGGCACTGTCAAAGGCACTGTGACTATCTCTGAAAAGGTTTCAGTTTGCACAATGTTGTTTTTTATAAAATGTACAAATGTTGTCTTTTTCTACTTCAAAATAAAAGCAAATTTATTTTGTATGCAAAACCTGAA

Function

NR:

description
G-protein coupled receptor 3-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971715.1 True 1756 mRNA 0.51 2 9622027 9624695

Neighbor

gene id symbol gene type direction distance location
cck-t cck-t coding upstream 48247 9568052 ~ 9573780 (+)
LOC110489367 LOC106570646 coding upstream 89365 9489794 ~ 9532662 (+)
LOC110487883 LOC106570652 coding upstream 192339 9410313 ~ 9429688 (+)
LOC110487882 LOC106570647 coding upstream 235683 9382727 ~ 9386344 (+)
trnap-agg-172 NA coding upstream 243064 9378892 ~ 9379108 (+)
LOC110487893 LOC106570636 coding downstream 424501 10049196 ~ 10064026 (+)
LOC118946535 NA coding downstream 466608 10091303 ~ 10092528 (+)
LOC118946540 NA coding downstream 697338 10318805 ~ 10323588 (+)
LOC110513484 LOC106570612 coding downstream 779677 10404372 ~ 10427604 (+)
si:ch211-199g17.9 syce1 coding downstream 812982 10437677 ~ 10441669 (+)
G2294661 NA non-coding upstream 3801 9618011 ~ 9618226 (+)
G2294649 NA non-coding upstream 36841 9584300 ~ 9585186 (+)
G2294636 NA non-coding upstream 66886 9549365 ~ 9555141 (+)
G2294632 NA non-coding upstream 81433 9539626 ~ 9540594 (+)
G2294619 NA non-coding upstream 113310 9508277 ~ 9508717 (+)
G2294664 NA non-coding downstream 574 9625269 ~ 9625484 (+)
G2294599 NA non-coding downstream 3508 9628203 ~ 9630099 (+)
G2294605 NA non-coding downstream 5522 9630217 ~ 9633050 (+)
G2294665 NA non-coding downstream 10448 9635143 ~ 9635531 (+)
G2294690 NA non-coding downstream 86302 9710997 ~ 9711541 (+)
G2294452 LOC106570648 other upstream 284272 9335335 ~ 9337755 (+)
G2294081 NA other upstream 518841 9094792 ~ 9103186 (+)
G2293943 LOC106570655 other upstream 774775 8844013 ~ 8847252 (+)
G2293942 NA other upstream 826525 8791101 ~ 8876464 (+)
G2293829 NA other upstream 1110286 8510872 ~ 8511770 (+)
G2294925 NA other downstream 505421 10130116 ~ 10131651 (+)
LOC110487904 snrpd1 other downstream 890259 10509464 ~ 10521398 (+)
G2296150 LOC106570575 other downstream 1660798 11285493 ~ 11290303 (+)
G2296278 NA other downstream 1938852 11563547 ~ 11564590 (+)

Expression


Co-expression Network