LOC110487893 (LOC106570636)


Basic Information

Item Value
gene id LOC110487893
gene name LOC106570636
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 10049196 ~ 10064026 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559811.2
ATCTGctacaaaaaataacaaaaaaaaaacccatTCCAGTGTTAGCCAATCTGCGACGCAGTTTAAGGACTGTCAAGGGAGGCCATAGCAGCAGCTGGCAAAAATATTGACAGTTTATCAAGCAACGAAACTCGGGATTTGCTGTTTTTGTGACCATAGCTGAGTAACACCGGTTAGGATTGGAAGGTGCAGCCGAGCTAGGGTGTAGTGAAgtcggggagaggaggaggaggggagggtccGGACAGGAGAAAAACAAAGATGTCTGTGTAGTTCAACTAGGCAAATCCTAGCGACCTGTCTGAACATCTCTCTGATTTTTTTCTCCAAAACTGACACGTCCCGGAGGTCCAGTGGATAGCGAGCTGGCAACggggaggagagaaaaaaaaccgTTTACCGACCAGCCGAACCGGGCCGTTATGAACGGCCGCTCATGCGCTGTCACGGCAAATAACTGCGACTTGacaacacaaaaacatctctgACGGGTTGTTTTGTTCTAGCTAGACGAGGGCGAGGGCCGGAGTGTTTTTGTGAGCTTGTTAGCTATAGCAATGTAGCTAGCTGAATATATTCGTTAAAACTGCCAGTCAACAGCGCTACATTTCTATACGAAAACGAccattagaaaaaaaaaaaactattttggaaAATTACTAAAACGTCCGTTTGTTAAATTCAACGCGTATTGCGCAACATTGcttactaactagctagctaactagctaactcaCTAGCTAACGTCCATTCCAGCTGTCCTGGCTTTCCCTTGCCGAGCCTGGGGTCGCTAAAtctgccagctagctaacaggtCGCTAGATTACGCCTGacaaacaccaccaccacccaccatgtCCTCGATGGAAGAGCGTGGTGAGGTGGGCGTCGCGGCGGCTCCAGGCTCCTCAGGCGGCCTGGGGGTTGGTGCGGTGGGGGCAGCTCTGGAGACAGTGGTCGGTGGGCCGTCAATGCAAGAGGAGGTGGGcttccgaagaggagagggaCTCGGGCCCGATTCGGACCCGGACGAGCCGCCGCCCAAGAAGCGGATGAGATTGCCGGAGGGAGAGTCGGGAAAGCTGGAAGAGAGGCTGTATTCAGTGCTGTGCTGCACGGTGTGTTTAGATCTGCCCAAAGCCTCCGTTTATCAGTGCACCAACGGTCACCTGATGTGTGCTGGTTGTTTCATCCACCTGCTGGCTGACTCTCGTCTGAAAGAGGAGCAGGCCACGTGTCCTAACTGCAGgtgtgaGATCACCAAGTCTCTGTGTTGTAGGAACCTGGCTGTAGAGAAGGCTGTGAGTGAGCTGCCCACAGACTGTCCCTTCTGTCTCAAACAGTTCCCTCGCTCCAGCCTAGAGAGGCACCAGAAAGAGGAGTGTCAAGACAGGGTGACGCAGTGTAAGTATAAGCGGATTGGCTGCCCATGGAAGGGACCGTTCCACGAGCTACCGGCCCACGAGGAGGAGTGCTGCCATCCCACCAAGACTGGCACAGAGCTGATGGGCATCCTGGGGGAGATGGACCAGAGCCACAGCAGAGAACTAACCCTTTACAACTCTATATTCTCCCTGCTCTGTTACGAGAAGATAGGCTTCACAGGTAGGCTAGAGGTCCAGTTCAGGCCGTACCGGACAGATGACTTCATCACCCGTCTGTACTATGAGAGTCCTCGTTTCACCGTGTTGAACCAGACCTGGGTACTGAAGGCCAGGGTCAACGACTCTGAACGCAACCCTAACCTCTCCTGCAAACGCACCCTCTCCTTCCAACTCATCCTCAAGagcaagGTGAACTCGGCTATAGAGTGTTCCTTCCTGCTGTTGAAAGGACCGTACGACGACGTGAGGATCAAGCCTGTGATCCACCATCACGCGTTCAGCAACGACACCAACGAGACAGACTACGTCCCCCTGCCCATCACCGACTCTGTGGAGTGTAACAAACTACTGGCCGCCAAGAACATCAACCTACGACTCTTCATCTTCCAGATCCAGAAATAGacaagacgaggaggaggaggagggagaggaccgAGAGAGACGTGTAGAGgacgtgagggagagagaagtttGAGTTTAAAGTGAGACACCACTGATacctctttacacacacacacatacacatacacatacacacacacacacagcccactagACCACATATTGAGAGAGTTAGGGAACCCCACCATTTCAGGTGCTGCTTTTAGTGTTGCTTTGGAGACCGGATGGTGTTGCTAGGGGAATTAATCTGTATGGACTGAGGATGTTGTTACTATGGGGGTGTTAGGGGAGAGGGGGTTGTCACTATGGAGACAGGATGGTGTACCCGTGCAGTTGAGTCGGTCTGACATTTCACCCTTTGACCCCAGAGCCAAAGGTAGCTCATACCCACCAAAGCAGGATGAACCatacgagagtgtgtgtgtgtgtgtgtggtatgatactctgagaaaatgtgtgtgcgtatgtgttcCAAAGATGTGAATGTGAGCTTTTGAACTCTGTTGACCACTCAGCTAGTCTGTCCTATAGAATGGAAGGGTGGGTTACTTGTATACACACACTCTGACCTGCTCCTAGTCTGTTTGATTAGGACAGCCGTCCACTTGGTTCGGAGACCAACCCAGAGCAGAGCCAAGATGGCAGTGTTTTGCATGCTCCTTTTAGTTAGTCCTTCAAAAATGAGTTGTGATTTATATATTTAACCTCAAAAGTTAACTTATaccttatttttttttaaatttatttttaaccCTGAATATTTAAATTCCTTTGAACTTAGCCTTTTTTTTAAAGTTTGGTATTAGTGTGGCTGTGCGCTCGCGTGTGTGTGCACGGTGTTGCTCGCGTGCGTGTGCACGGTGTTGCTCGCGTGCGTGTGCACGGTGTTGCTCGCGTGCGTGTGCACGGTGTTGCTCGCGTGCGTGTGCACGGTGTTGCTCGCGTGAGTGTGCACGGTGTTGCTCGCGTGCGTGTGCACGGTGTTGCTCGCGTGCGTTTGTTTTTTGACAGATGCATTTAGGGCCCTAGTGATCACATCCCTATAAACAGATACTtgcatggccacacacacacacacacacacatacacacacacacaatcaacagACCTCTTAGGCCTGCTCAGAAACCAACatctgtgtatgtatgtttgtgtggacTCCTCCTTCTTCTCTGGTTGGGCCGTGCTAGAACCGGAGAACCCAGAACCCTGAAACGGACCTGAAGGGAACCCCAGCTAGTGTGACAGACTGGGTTTGAATCCAGTTTGTCTGCGTGCCACAAGACCGCGTTAGTCCTCTAAGCTAAATCCCAGGGCATTATCTTGGGGAGGTTCCCCTGTAGGAGGGTGGTTCCCCTGTAGGAGGGTGGTTCCCCTGTAGGAGGGCGGTTCCCCTGTAGTAGGGTGGTTCCCCTCCGGAAGATGGAAAAGAGAACCTGAACGGTCCACCGAGTCAACCCTGTTTCACAGGACTAAGGGCTCGATTCCatcagatccgctttagccaACATCTGCAGAGTGGTTGTTTTGGCGGTCAAATCCACAAGTAAAGCCGGGCATTCccattggctgcacggagtcacattaacagaaatcccatgcagccttgtttacatgttcaacactggaatgtgagatgtagcCTACACTTTGATTTAGGGATGAATGAAATCCTCATTTAGTTGAATGATTTTTTTCAATTTGAGCATAAATATTtccatatagcctacacattctCGTTGTGAACTTCTGCAGTGAAGTGGGGCAGGTGTGGTTTCCTGGCGATGATCGCAAGAACAGCTGCTCAgcgaattattattattatttttttttttgatgGCTCAAACTGAAGTCCCACCGCCAAAACATCCGCTATGCTGGTGTCTACTGACGCCGGTTAACTCATGATCTGATTGTCTAGACCTAGCTCATGACTCTGGTTTTAAATGGGGAGAATCCTGGATGGGACCTTTTGACTTTGGGAACTGGTAATTTGTGTGTGCGTTACTATGGTGACGTGTTTAGAGTGTTTAGAGTTACTTGAATGATGCTGAGATGACGATGTTACTAAAAAGTAGAATCTACTGTGAtggctctgtctctcctcctggcCTATTTAGGTTGAGTATTTCTATAGATCTGACTCCTCCGGGCCTATCTAGgtcttgtatttctgtgttttaatGCTTTTTCGTCTCTATGCCAATAGACTCACTGACTCATCTCACTATGGCTGTACATGTGCCTTTTATTAAAGATCATGGAaactga
>XM_021559812.2
TCTGctacaaaaaataacaaaaaaaaaacccatTCCAGTGTTAGCCAATCTGCGACGCAGTTTAAGGACTGTCAAGGGAGGCCATAGCAGCAGCTGGCAAAAATATTGACAGTTTATCAAGCAACGAAACTCGGGATTTGCTGTTTTTGTGACCATAGCTGAGTAACACCGGTTAGGATTGGAAGGTGCAGCCGAGCTAGGGTGTAGTGAAgtcggggagaggaggaggaggggagggtccGGACAGGAGAAAAACAAAGATGTCTGTGTAGTTCAACTAGGCAAATCCTAGCGACCTGTCTGAACATCTCTCTGATTTTTTTCTCCAAAACTGACACGTCCCGGAGGTCCAGTGGATAGCGAGCTGGCAACggggaggagagaaaaaaaaccgTTTACCGACCAGCCGAACCGGGCCGTTATGAACGGCCGCTCATGCGCTGTCACGGCAAATAACTGCGACTTGacaacacaaaaacatctctgACGGGTTGTTTTGTTCTAGCTAGACGAGGGCGAGGGCCGGAGTGTTTTTGTGAGCTTGTTAGCTATAGCAATGTAGCTAGCTGAATATATTCGTTAAAACTGCCAGTCAACAGCGCTACATTTCTATACGAAAACGAccattagaaaaaaaaaaaactattttggaaAATTACTAAAACGTCCGTTTGTTAAATTCAACGCGTATTGCGCAACATTGcttactaactagctagctaactagctaactcaCTAGCTAACGTCCATTCCAGCTGTCCTGGCTTTCCCTTGCCGAGCCTGGGGTCGCTAAAtctgccagctagctaacaggtCGCTAGATTACGCCTGacaaacaccaccaccacccaccatgtCCTCGATGGAAGAGCGTGGTGAGGTGGGCGTCGCGGCGGCTCCAGGCTCCTCAGGCGGCCTGGGGGTTGGTGCGGTGGGGGCAGCTCTGGAGACAGTGGTCGGTGGGCCGTCAATGCAAGAGGAGGTGGGcttccgaagaggagagggaCTCGGGCCCGATTCGGACCCGGACGAGCCGCCGCCCAAGAAGCGGATGAGATTGCCGGAGGGAGAGTCGGGAAAGCTGGAAGAGAGGCTGTATTCAGTGCTGTGCTGCACGGTGTGTTTAGATCTGCCCAAAGCCTCCGTTTATCAGTGCACCAACGGTCACCTGATGTGTGCTGGTTGTTTCATCCACCTGCTGGCTGACTCTCGTCTGAAAGAGGAGCAGGCCACGTGTCCTAACTGCAGgtgtgaGATCACCAAGTCTCTGTGTTGTAGGAACCTGGCTGTAGAGAAGGCTGTGAGTGAGCTGCCCACAGACTGTCCCTTCTGTCTCAAACAGTTCCCTCGCTCCAGCCTAGAGAGGCACCAGAAAGAGGAGTGTCAAGACAGGGTGACGCAGTGTAAGTATAAGCGGATTGGCTGCCCATGGAAGGGACCGTTCCACGAGCTACCGGCCCACGAGGAGGAGTGCTGCCATCCCACCAAGACTGGCACAGAGCTGATGGGCATCCTGGGGGAGATGGACCAGAGCCACAGCAGAGAACTAACCCTTTACAACTCTATATTCTCCCTGCTCTGTTACGAGAAGATAGGCTTCACAGAGGTCCAGTTCAGGCCGTACCGGACAGATGACTTCATCACCCGTCTGTACTATGAGAGTCCTCGTTTCACCGTGTTGAACCAGACCTGGGTACTGAAGGCCAGGGTCAACGACTCTGAACGCAACCCTAACCTCTCCTGCAAACGCACCCTCTCCTTCCAACTCATCCTCAAGagcaagGTGAACTCGGCTATAGAGTGTTCCTTCCTGCTGTTGAAAGGACCGTACGACGACGTGAGGATCAAGCCTGTGATCCACCATCACGCGTTCAGCAACGACACCAACGAGACAGACTACGTCCCCCTGCCCATCACCGACTCTGTGGAGTGTAACAAACTACTGGCCGCCAAGAACATCAACCTACGACTCTTCATCTTCCAGATCCAGAAATAGacaagacgaggaggaggaggagggagaggaccgAGAGAGACGTGTAGAGgacgtgagggagagagaagtttGAGTTTAAAGTGAGACACCACTGATacctctttacacacacacacatacacatacacatacacacacacacacagcccactagACCACATATTGAGAGAGTTAGGGAACCCCACCATTTCAGGTGCTGCTTTTAGTGTTGCTTTGGAGACCGGATGGTGTTGCTAGGGGAATTAATCTGTATGGACTGAGGATGTTGTTACTATGGGGGTGTTAGGGGAGAGGGGGTTGTCACTATGGAGACAGGATGGTGTACCCGTGCAGTTGAGTCGGTCTGACATTTCACCCTTTGACCCCAGAGCCAAAGGTAGCTCATACCCACCAAAGCAGGATGAACCatacgagagtgtgtgtgtgtgtgtgtggtatgatactctgagaaaatgtgtgtgcgtatgtgttcCAAAGATGTGAATGTGAGCTTTTGAACTCTGTTGACCACTCAGCTAGTCTGTCCTATAGAATGGAAGGGTGGGTTACTTGTATACACACACTCTGACCTGCTCCTAGTCTGTTTGATTAGGACAGCCGTCCACTTGGTTCGGAGACCAACCCAGAGCAGAGCCAAGATGGCAGTGTTTTGCATGCTCCTTTTAGTTAGTCCTTCAAAAATGAGTTGTGATTTATATATTTAACCTCAAAAGTTAACTTATaccttatttttttttaaatttatttttaaccCTGAATATTTAAATTCCTTTGAACTTAGCCTTTTTTTTAAAGTTTGGTATTAGTGTGGCTGTGCGCTCGCGTGTGTGTGCACGGTGTTGCTCGCGTGCGTGTGCACGGTGTTGCTCGCGTGCGTGTGCACGGTGTTGCTCGCGTGCGTGTGCACGGTGTTGCTCGCGTGCGTGTGCACGGTGTTGCTCGCGTGAGTGTGCACGGTGTTGCTCGCGTGCGTGTGCACGGTGTTGCTCGCGTGCGTTTGTTTTTTGACAGATGCATTTAGGGCCCTAGTGATCACATCCCTATAAACAGATACTtgcatggccacacacacacacacacacacatacacacacacacaatcaacagACCTCTTAGGCCTGCTCAGAAACCAACatctgtgtatgtatgtttgtgtggacTCCTCCTTCTTCTCTGGTTGGGCCGTGCTAGAACCGGAGAACCCAGAACCCTGAAACGGACCTGAAGGGAACCCCAGCTAGTGTGACAGACTGGGTTTGAATCCAGTTTGTCTGCGTGCCACAAGACCGCGTTAGTCCTCTAAGCTAAATCCCAGGGCATTATCTTGGGGAGGTTCCCCTGTAGGAGGGTGGTTCCCCTGTAGGAGGGTGGTTCCCCTGTAGGAGGGCGGTTCCCCTGTAGTAGGGTGGTTCCCCTCCGGAAGATGGAAAAGAGAACCTGAACGGTCCACCGAGTCAACCCTGTTTCACAGGACTAAGGGCTCGATTCCatcagatccgctttagccaACATCTGCAGAGTGGTTGTTTTGGCGGTCAAATCCACAAGTAAAGCCGGGCATTCccattggctgcacggagtcacattaacagaaatcccatgcagccttgtttacatgttcaacactggaatgtgagatgtagcCTACACTTTGATTTAGGGATGAATGAAATCCTCATTTAGTTGAATGATTTTTTTCAATTTGAGCATAAATATTtccatatagcctacacattctCGTTGTGAACTTCTGCAGTGAAGTGGGGCAGGTGTGGTTTCCTGGCGATGATCGCAAGAACAGCTGCTCAgcgaattattattattatttttttttttgatgGCTCAAACTGAAGTCCCACCGCCAAAACATCCGCTATGCTGGTGTCTACTGACGCCGGTTAACTCATGATCTGATTGTCTAGACCTAGCTCATGACTCTGGTTTTAAATGGGGAGAATCCTGGATGGGACCTTTTGACTTTGGGAACTGGTAATTTGTGTGTGCGTTACTATGGTGACGTGTTTAGAGTGTTTAGAGTTACTTGAATGATGCTGAGATGACGATGTTACTAAAAAGTAGAATCTACTGTGAtggctctgtctctcctcctggcCTATTTAGGTTGAGTATTTCTATAGATCTGACTCCTCCGGGCCTATCTAGgtcttgtatttctgtgttttaatGCTTTTTCGTCTCTATGCCAATAGACTCACTGACTCATCTCACTATGGCTGTACATGTGCCTTTTATTAAAGATCATGGAaactga

Function

NR:

description
cysteine and histidine-rich protein 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559811.2 False 4278 mRNA 0.49 6 10049196 10064026
XM_021559812.2 True 4268 mRNA 0.49 6 10049197 10064026

Neighbor

gene id symbol gene type direction distance location
LOC110487884 LOC106570642 coding upstream 424501 9622027 ~ 9624695 (+)
cck-t cck-t coding upstream 475416 9568052 ~ 9573780 (+)
LOC110489367 LOC106570646 coding upstream 516534 9489794 ~ 9532662 (+)
LOC110487883 LOC106570652 coding upstream 619508 9410313 ~ 9429688 (+)
LOC110487882 LOC106570647 coding upstream 662852 9382727 ~ 9386344 (+)
LOC118946535 NA coding downstream 27277 10091303 ~ 10092528 (+)
LOC118946540 NA coding downstream 258007 10318805 ~ 10323588 (+)
LOC110513484 LOC106570612 coding downstream 340346 10404372 ~ 10427604 (+)
si:ch211-199g17.9 syce1 coding downstream 373651 10437677 ~ 10441669 (+)
LOC110489372 LOC106570609 coding downstream 402339 10466365 ~ 10490055 (+)
G2294893 NA non-coding upstream 29692 10018654 ~ 10019504 (+)
G2294889 NA non-coding upstream 37784 10011115 ~ 10011412 (+)
G2294888 NA non-coding upstream 42081 10006890 ~ 10007115 (+)
G2294887 NA non-coding upstream 42449 10006541 ~ 10006747 (+)
G2294813 NA non-coding upstream 60903 9983160 ~ 9988293 (+)
G2294905 NA non-coding downstream 21992 10086018 ~ 10094011 (+)
G2294922 NA non-coding downstream 59598 10123624 ~ 10123842 (+)
G2294923 NA non-coding downstream 60029 10124055 ~ 10124316 (+)
G2294925 NA non-coding downstream 66807 10130116 ~ 10131651 (+)
G2294931 NA non-coding downstream 73994 10138020 ~ 10167492 (+)
G2294452 LOC106570648 other upstream 711441 9335335 ~ 9337755 (+)
G2294081 NA other upstream 946010 9094792 ~ 9103186 (+)
G2293943 LOC106570655 other upstream 1201944 8844013 ~ 8847252 (+)
G2293942 NA other upstream 1253694 8791101 ~ 8876464 (+)
G2293829 NA other upstream 1537455 8510872 ~ 8511770 (+)
LOC110487904 snrpd1 other downstream 450928 10509464 ~ 10521398 (+)
G2296150 LOC106570575 other downstream 1221467 11285493 ~ 11290303 (+)
G2296278 NA other downstream 1499521 11563547 ~ 11564590 (+)

Expression


Co-expression Network