Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110489370 |
| gene name | clasp2 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_050572.1 |
| NCBI id | CM025859.1 |
| chromosome length | 41837469 |
| location | 10205530 ~ 10316136 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| clasp2 | Predicted to enable microtubule plus-end binding activity. Predicted to be involved in several processes, including exit from mitosis; microtubule cytoskeleton organization; and regulation of microtubule polymerization or depolymerization. Predicted to act upstream of or within cell division. Predicted to be located in microtubule; ruffle membrane; and trans-Golgi network. Predicted to be active in basal cortex; kinetochore; and microtubule cytoskeleton. Orthologous to human CLASP2 (cytoplasmic linker associated protein 2). |
| description |
|---|
| PREDICTED: CLIP-associating protein 2-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036971523.1 | False | 4897 | mRNA | 0.54 | 32 | 10205650 | 10257524 |
| XM_036971511.1 | False | 5199 | mRNA | 0.54 | 38 | 10205650 | 10257619 |
| XM_036971510.1 | False | 5224 | mRNA | 0.53 | 38 | 10205650 | 10263629 |
| XM_036971512.1 | False | 5449 | mRNA | 0.53 | 39 | 10205650 | 10265431 |
| XM_036971515.1 | False | 6245 | mRNA | 0.53 | 38 | 10205650 | 10316127 |
| XM_036971516.1 | False | 6242 | mRNA | 0.53 | 37 | 10205650 | 10316127 |
| XM_036971484.1 | False | 6450 | mRNA | 0.53 | 43 | 10205650 | 10316128 |
| XM_036971485.1 | False | 6450 | mRNA | 0.53 | 43 | 10205650 | 10316128 |
| XM_036971486.1 | False | 6447 | mRNA | 0.53 | 43 | 10205650 | 10316128 |
| XM_036971488.1 | False | 6423 | mRNA | 0.53 | 42 | 10205650 | 10316128 |
| XM_036971489.1 | False | 6420 | mRNA | 0.53 | 42 | 10205650 | 10316128 |
| XM_036971490.1 | False | 6411 | mRNA | 0.53 | 43 | 10205650 | 10316128 |
| XM_036971491.1 | False | 6411 | mRNA | 0.53 | 43 | 10205650 | 10316128 |
| XM_036971492.1 | False | 6408 | mRNA | 0.53 | 42 | 10205650 | 10316128 |
| XM_036971493.1 | False | 6396 | mRNA | 0.53 | 41 | 10205650 | 10316128 |
| XM_036971494.1 | False | 6387 | mRNA | 0.53 | 42 | 10205650 | 10316128 |
| XM_036971495.1 | False | 6387 | mRNA | 0.53 | 42 | 10205650 | 10316128 |
| XM_036971496.1 | False | 6384 | mRNA | 0.53 | 41 | 10205650 | 10316128 |
| XM_036971497.1 | False | 6363 | mRNA | 0.53 | 41 | 10205650 | 10316128 |
| XM_036971498.1 | False | 6348 | mRNA | 0.53 | 42 | 10205650 | 10316128 |
| XM_036971499.1 | False | 6345 | mRNA | 0.53 | 41 | 10205650 | 10316128 |
| XM_036971500.1 | False | 6324 | mRNA | 0.53 | 41 | 10205650 | 10316128 |
| XM_036971501.1 | False | 6324 | mRNA | 0.53 | 43 | 10205650 | 10316128 |
| XM_036971502.1 | False | 6321 | mRNA | 0.53 | 40 | 10205650 | 10316128 |
| XM_036971503.1 | False | 6303 | mRNA | 0.53 | 42 | 10205650 | 10316128 |
| XM_036971504.1 | False | 6279 | mRNA | 0.53 | 41 | 10205650 | 10316128 |
| XM_036971505.1 | False | 6270 | mRNA | 0.53 | 41 | 10205650 | 10316128 |
| XM_036971506.1 | False | 6258 | mRNA | 0.53 | 41 | 10205650 | 10316128 |
| XM_036971507.1 | False | 6234 | mRNA | 0.53 | 40 | 10205650 | 10316128 |
| XM_036971509.1 | False | 6180 | mRNA | 0.53 | 38 | 10205650 | 10316128 |
| XM_036971514.1 | False | 6270 | mRNA | 0.53 | 39 | 10205650 | 10316128 |
| XM_036971517.1 | False | 6354 | mRNA | 0.53 | 40 | 10205650 | 10316128 |
| XM_036971518.1 | False | 6333 | mRNA | 0.53 | 40 | 10205650 | 10316128 |
| XM_036971520.1 | False | 6330 | mRNA | 0.53 | 39 | 10205650 | 10316128 |
| XM_036971521.1 | False | 6294 | mRNA | 0.53 | 40 | 10205650 | 10316128 |
| XM_036971522.1 | False | 6291 | mRNA | 0.53 | 39 | 10205650 | 10316128 |
| XM_036971482.1 | False | 6264 | mRNA | 0.53 | 45 | 10205650 | 10316129 |
| XM_036971483.1 | False | 6472 | mRNA | 0.53 | 43 | 10205650 | 10316129 |
| XM_036971513.1 | False | 4434 | mRNA | 0.54 | 38 | 10214706 | 10316136 |
| TU2625754 | True | 1813 | TUCP | 0.49 | 3 | 10205530 | 10209825 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110514928 | LOC106588748 | coding | downstream | 7561 | 10128402 ~ 10198089 (-) |
| LOC118946454 | NA | coding | downstream | 77520 | 10126928 ~ 10128130 (-) |
| LOC110487897 | pdcd6ip | coding | downstream | 86192 | 10082281 ~ 10119458 (-) |
| LOC110487895 | LOC106570596 | coding | downstream | 166957 | 10014678 ~ 10038693 (-) |
| LOC110487896 | LOC106570598 | coding | downstream | 217319 | 9980413 ~ 9988331 (-) |
| LOC110487903 | LOC106588753 | coding | upstream | 3927 | 10320063 ~ 10352213 (-) |
| LOC110517675 | LOC106570607 | coding | upstream | 208490 | 10524626 ~ 10528185 (-) |
| LOC118946517 | LOC106570605 | coding | upstream | 216064 | 10532200 ~ 10535485 (-) |
| LOC110489376 | LOC106570616 | coding | upstream | 280837 | 10596973 ~ 10646812 (-) |
| LOC110487911 | LOC106570591 | coding | upstream | 366412 | 10682548 ~ 10691813 (-) |
| G2295489 | NA | non-coding | downstream | 401 | 10204868 ~ 10205249 (-) |
| G2295488 | NA | non-coding | downstream | 3919 | 10201470 ~ 10201731 (-) |
| G2295485 | NA | non-coding | downstream | 6867 | 10198568 ~ 10198783 (-) |
| G2295472 | NA | non-coding | downstream | 85135 | 10120145 ~ 10120515 (-) |
| G2295471 | NA | non-coding | downstream | 85590 | 10119793 ~ 10120060 (-) |
| G2295531 | NA | non-coding | upstream | 14905 | 10331041 ~ 10331294 (-) |
| G2295535 | NA | non-coding | upstream | 25976 | 10342112 ~ 10342436 (-) |
| G2295550 | NA | non-coding | upstream | 69186 | 10385322 ~ 10387246 (-) |
| G2295556 | NA | non-coding | upstream | 80792 | 10396928 ~ 10397168 (-) |
| G2295557 | NA | non-coding | upstream | 81932 | 10398068 ~ 10398587 (-) |
| LOC110487885 | LOC106570639 | other | downstream | 534090 | 9667465 ~ 9705713 (-) |
| G2294565 | NA | other | downstream | 761910 | 9443280 ~ 9443740 (-) |
| G2294557 | NA | other | downstream | 775156 | 9429508 ~ 9430494 (-) |
| LOC110487880 | LOC106570649 | other | downstream | 872558 | 9313642 ~ 9333092 (-) |
| G2295895 | NA | other | upstream | 471971 | 10788107 ~ 10788559 (-) |
| LOC110487919 | LOC106570575 | other | upstream | 970733 | 11274255 ~ 11455993 (-) |
| G2296582 | NA | other | upstream | 1165469 | 11481605 ~ 11488380 (-) |
| LOC110487923 | LOC106588825 | other | upstream | 1816482 | 12130756 ~ 12146683 (-) |
| G2298681 | NA | other | upstream | 3334565 | 13650701 ~ 13651184 (-) |
| G2295500 | NA | non-coding | upstream | 23061 | 10232886 ~ 10233136 (-) |
| G2295510 | NA | non-coding | upstream | 56099 | 10265924 ~ 10266367 (-) |
| G2295514 | NA | non-coding | upstream | 61615 | 10271440 ~ 10275003 (-) |
| G2295519 | NA | non-coding | upstream | 69706 | 10279531 ~ 10279898 (-) |
| G2295524 | NA | non-coding | upstream | 94942 | 10304767 ~ 10306291 (-) |
