LOC110489373 (LOC106570620)


Basic Information

Item Value
gene id LOC110489373
gene name LOC106570620
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 10507093 ~ 10509282 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971644.1
CGTAGGATTGTTTGATAAATTACACTTTTTTATGTAATATTTTAGAATAGTTTCTACGCAATATTGATACATGAGGTCCCTGGTCAATTTAATGGACACTGTGCTGAAAGGGCTGGTCTTCAATAGGGCACAGTGACAGACTGCATACTGCGTAAGGACTGGGCTGTGGGGAAGAGAAAACAGACGTTAAGTTTCGTTTTCCAAATCTCAACGTCAGGGGAATACCAGCAGGACCATATAAAATATTCAGCTCATACCGGACAATATCATAACCACACAAATAGATAATTTGTTCTTCAACAGCATTTTTTTTCCATTTGTTCTCCGACATTGACGATCATGAGCACAGACTGGACACCCACCCTGTGGTCAGAGTGTTTTGAGGAGATGTTGGATGAGGAGTTGGACAGCAGTGACCAGTGGGCCTTCCACTTCAACTATGGCCTGACAGAAGCACTCaccaaggaggagaggaggagaggatggagggtgtACAGCCACTGTGCCTATGGACGgttCCAGTGTGGTGGGTGCTCTAAGACGTGGCGGTCGGCACGGGTGGTGCTAATGTTCCGGTACCGTCTACGGGATACGACAGCCAGGGGGACCGTGCTGATGCGGCCGTACGGCCAGGCATGCAAACGCTGCCGGGAAGAGTTTGAACTCCCAGGTTTCTCCCAGAACGAGGTGGAGGAGGCACTGCTTGGATTGTTTGGAAAAATTAAGAAGAACTGCTACgacgaggatgaggaggaggaagaggaggaagaggaggaggaggaggaagaggaggaggaggaggaggaagaagaggaggtgtcGAGGAGGCCCCATGAGAAAGCCCTGTGTGAAGCCTGCAGACTGGGCATCTGCTGTCAAGAGTAGAGAAAAagagatcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacagagagacagtgaggggaACGTATATCCTAATGCTGTCTAGAATTGGTTGTAAAAATATTAAGAACAGCACTATCTATTATGTGCCTAAGGACTCCATACAATCTTTATGTAGCCTAATGTAATGTACTATCAATAGCGATGACCTAATTTTTTATCCATAACTTACTTGTACATTGGAGTTGTGTAGTAAACATGTATTATGTGTGTAGTAAACATGTATTATGTGTGTAGTAAACATGTATTATGTGTAATAAACATACAGAATGGGAAGAC

Function

NR:

description
receptor-transporting protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971644.1 True 1255 mRNA 0.46 3 10507093 10509282

Neighbor

gene id symbol gene type direction distance location
LOC110489372 LOC106570609 coding upstream 17038 10466365 ~ 10490055 (+)
si:ch211-199g17.9 syce1 coding upstream 65424 10437677 ~ 10441669 (+)
LOC110513484 LOC106570612 coding upstream 79489 10404372 ~ 10427604 (+)
LOC118946540 NA coding upstream 184371 10318805 ~ 10323588 (+)
LOC118946535 NA coding upstream 414565 10091303 ~ 10092528 (+)
LOC110487904 snrpd1 coding downstream 182 10509464 ~ 10521398 (+)
LOC110487905 LOC106570604 coding downstream 32374 10541656 ~ 10568730 (+)
btd LOC106570600 coding downstream 69124 10578406 ~ 10586437 (+)
LOC110487909 LOC106570592 coding downstream 157408 10666690 ~ 10669052 (+)
polr1f twistnb coding downstream 160966 10670248 ~ 10675600 (+)
G2295030 NA non-coding upstream 14613 10430681 ~ 10492480 (+)
G2295062 NA non-coding upstream 34451 10468125 ~ 10472642 (+)
G2295032 NA non-coding upstream 40869 10448381 ~ 10466224 (+)
G2295044 NA non-coding upstream 90567 10416149 ~ 10416526 (+)
G2295077 NA non-coding downstream 3604 10512886 ~ 10513353 (+)
G2295078 NA non-coding downstream 13185 10522467 ~ 10522809 (+)
G2295080 NA non-coding downstream 15376 10524658 ~ 10525885 (+)
G2295082 NA non-coding downstream 17837 10527119 ~ 10528078 (+)
G2294925 NA other upstream 375442 10130116 ~ 10131651 (+)
G2294452 LOC106570648 other upstream 1169338 9335335 ~ 9337755 (+)
G2294081 NA other upstream 1403907 9094792 ~ 9103186 (+)
G2293943 LOC106570655 other upstream 1659841 8844013 ~ 8847252 (+)
G2296150 LOC106570575 other downstream 776211 11285493 ~ 11290303 (+)
G2296278 NA other downstream 1054265 11563547 ~ 11564590 (+)
LOC110487932 LOC106570557 other downstream 1397425 11906205 ~ 11910366 (+)
G2296450 NA other downstream 1405914 11915196 ~ 11977297 (+)

Expression


Co-expression Network