LOC110487904 (snrpd1)


Basic Information

Item Value
gene id LOC110487904
gene name snrpd1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 10509464 ~ 10521398 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559822.2
CAATAACAACAGAAACAGCAGCATCTCGAATCATCACTCAGAATAACTGAGGTTATTATATCGAGAAGGAAAATAATGAAATAATATTCTGCCAGTGTGAATGTTTGGATGTCCGACTGGTGACCAAGTGAATCGATGGTGGTTTTTTTGATGAAACTCAGCCATGAGACTGTGACCATTGAGCTGAAGAATGGAACCCAGGTCCATGGGACAATCACGGGTGTGGACGTGAGTATGAACACTCACCTGAAGGCGGTGAAGATGACTCTGAAGAACCGCGAGCCCACCCAGCTGGAGAGCCTCAGTATCCGCGGCAACAACATCAGATACTTCATCCTGCCGGACAGTCTGCCGCTGGACACCCTGCTGGTCGACATTGAACCCAAGGTCAAGTCCAAGAAGAGAGAGGCTGTGGCTGGGCGTGGAAGGGGCAGAGGAAGAGGgcgtggcagggggaggggccgAGGCAGGGGAGGGCCCAGGAGATGATCGCCATGACGACGCAGATGTCAGTCTTGTCCTACTGTTTGTACAGCAAcgtttttttgtcttttttctcCTCAGGAAACTTTTGAATCCCGAGccatgtttttctttttttcttattttgtacaTTAAAGATGTTTCACACGAACAGCAAA
>XM_021559821.2
TTTTTGCATTTCCTGGTTCGGTCGAGTTTTTATGACGTCGGTGATCCTGCAACGAAAACGTATTTCATACAGCAGCGGCCTGTGATCCCACTTGTACGCTGTAattattttgttttgtctttggtggAGGATTTGTCTAATCCATCACCAACATGAAACTCGTACGTTTTTTGATGAAACTCAGCCATGAGACTGTGACCATTGAGCTGAAGAATGGAACCCAGGTCCATGGGACAATCACGGGTGTGGACGTGAGTATGAACACTCACCTGAAGGCGGTGAAGATGACTCTGAAGAACCGCGAGCCCACCCAGCTGGAGAGCCTCAGTATCCGCGGCAACAACATCAGATACTTCATCCTGCCGGACAGTCTGCCGCTGGACACCCTGCTGGTCGACATTGAACCCAAGGTCAAGTCCAAGAAGAGAGAGGCTGTGGCTGGGCGTGGAAGGGGCAGAGGAAGAGGgcgtggcagggggaggggccgAGGCAGGGGAGGGCCCAGGAGATGATCGCCATGACGACGCAGATGTCAGTCTTGTCCTACTGTTTGTACAGCAAcgtttttttgtcttttttctcCTCAGGAAACTTTTGAATCCCGAGccatgtttttctttttttcttattttgtacaTTAAAGATGTTTCACACGAACAGCAAA
>TU2625228
TAACAACAGAAACAGCAGCATCTCGAATCATCACTCAGAATAACTGAGGTTATTATATCGAGAAGGAAAATAATGAAATAATATTCTGCCAGTGTGAATGTTTGGATGTCCGACTGGTGACCAAGTGAATCGATGGTGGTGTAAGTAGTAGATTGATAGCTAGCTAATTAACGTTAGATTCTATCAGCTAGATGCTGTATCAttagctagcttgttagctaacgttagctgttttAGACAGTTGTAGCTAGGTAGTTTTAATGATTTAACAACACTAAATTGAGAGCCCAACAACGATGTACTCTCTATGTATCTAGCTACCTAGCTCTTACCATTTAAaccatacaacaacaaaaaaa
>TU2625227
CCTGCAACGAAAACGTATTTCATACAGCAGCGGCCTGTGATCCCACTTGTACGCTGTAattattttgttttgtctttggtggAGGATTTGTCTAATCCATCACCAACATGAAACTCGTACGTTTTTTGATGAAACTCAGCCATGAGACTGTGACCATTGAGCTGAAGAATGGAACCCAGGTCCATGGGACAATCACGGGTGTGGACGTGAGTATGAACACTCACCTGAAGGCGGTGAAGATGACTCTGAAGAACCGCGAGCCCACCCAGCTGGAGAGCCTCAGTATCCGCGGCAACAACATCAGATACTTCATCCTGCCGGACAGTCTGCCGCTGGACACCCTGCTGGTCGACATTGAACCCAAGGTCAAGTCCAAGAAGAGAGAGGCTGTGGCTGGGCGTGGAAGGGGCAGAGGAAGAGGgcgtggcagggggaggggccgAGGCAGGGGAGGGCCCAGGAGATGATCGCCATGACGACGCAGATGTCAGTCTTGTCCTACTGTTTGTACAGCAAcgtttttttgtc

Function

symbol description
snrpd1 Predicted to enable RNA binding activity. Acts upstream of or within heart development. Predicted to be located in nucleus and viral nucleocapsid. Predicted to be part of SMN-Sm protein complex; nucleus; and pICln-Sm protein complex. Human ortholog(s) of this gene implicated in connective tissue disease; nephritis; proteinuria; and systemic lupus erythematosus. Orthologous to human SNRPD1 (small nuclear ribonucleoprotein D1 polypeptide).

NR:

description
PREDICTED: small nuclear ribonucleoprotein Sm D1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559822.2 False 641 mRNA 0.49 4 10509464 10521398
XM_021559821.2 False 664 mRNA 0.49 4 10514909 10521398
TU2625228 False 359 lncRNA 0.36 1 10509467 10509825
TU2625227 True 528 TUCP 0.53 4 10514954 10521307

Neighbor

gene id symbol gene type direction distance location
LOC110489373 LOC106570620 coding upstream 182 10507093 ~ 10509282 (+)
LOC110489372 LOC106570609 coding upstream 19409 10466365 ~ 10490055 (+)
si:ch211-199g17.9 syce1 coding upstream 67795 10437677 ~ 10441669 (+)
LOC110513484 LOC106570612 coding upstream 81860 10404372 ~ 10427604 (+)
LOC118946540 NA coding upstream 186742 10318805 ~ 10323588 (+)
LOC110487905 LOC106570604 coding downstream 20258 10541656 ~ 10568730 (+)
btd LOC106570600 coding downstream 57008 10578406 ~ 10586437 (+)
LOC110487909 LOC106570592 coding downstream 145292 10666690 ~ 10669052 (+)
polr1f twistnb coding downstream 148850 10670248 ~ 10675600 (+)
LOC110489377 LOC106588728 coding downstream 237653 10759051 ~ 10809399 (+)
G2295030 NA non-coding upstream 16984 10430681 ~ 10492480 (+)
G2295062 NA non-coding upstream 36822 10468125 ~ 10472642 (+)
G2295032 NA non-coding upstream 43240 10448381 ~ 10466224 (+)
G2295044 NA non-coding upstream 92938 10416149 ~ 10416526 (+)
G2295078 NA non-coding downstream 1069 10522467 ~ 10522809 (+)
G2295080 NA non-coding downstream 3260 10524658 ~ 10525885 (+)
G2295082 NA non-coding downstream 5721 10527119 ~ 10528078 (+)
G2295089 NA non-coding downstream 27742 10549140 ~ 10573417 (+)
G2295090 NA non-coding downstream 28704 10550102 ~ 10575187 (+)
G2294925 NA other upstream 377813 10130116 ~ 10131651 (+)
G2294452 LOC106570648 other upstream 1171709 9335335 ~ 9337755 (+)
G2294081 NA other upstream 1406278 9094792 ~ 9103186 (+)
G2293943 LOC106570655 other upstream 1662212 8844013 ~ 8847252 (+)
G2296150 LOC106570575 other downstream 764095 11285493 ~ 11290303 (+)
G2296278 NA other downstream 1042149 11563547 ~ 11564590 (+)
LOC110487932 LOC106570557 other downstream 1385309 11906205 ~ 11910366 (+)
G2296450 NA other downstream 1393798 11915196 ~ 11977297 (+)
G2298390 NA other downstream 3108664 13630062 ~ 13630795 (+)
G2295077 NA non-coding downstream 3061 10512886 ~ 10513353 (+)
LOC110487904 snrpd1 other downstream 5129 10509464 ~ 10521398 (+)

Expression


Co-expression Network