polr1f (twistnb)


Basic Information

Item Value
gene id polr1f
gene name twistnb
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 10670248 ~ 10675600 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559827.2
AAACTCGCGGTCCCCCTTCACTACGGAAGTCTTCCCTCGTCGACTTCCTTCCTGCTGTCTCCAGCATCATGGCGAACTTGGAGCAGACAGAAGACGACCCAAAACACGCAAAAATGTCCACCGAAGTCTCAGTTTTAACCAATCCGACAGCAAACGGGCCTTCTGCGGCAGGCGGTGGAGACCCAGGCGCGTTCCCAAGTCTGATCCCGTCGTTCGCTAGCGCATGCAAGTTGGTGTCAACGCGGTACTCGTGTCTGGTCATGGACACGCACAGAAGACACATTGCCCTGTCGCCCATGTACCTGAAGAAGAAACGGACAGGGATCCAAGAGGAACTGAACACCGAACTGCTAAGATACTCAGAAAGTCTGAAAGGTGTGCCTCTGGCCTATGATGAGGTCAGTTTGCTGGGGCAGCATGGAGACATCTACGACGATAACGGATACATTCACCTCGACATACAAGCCAACTTTGTCGTCTTCCAACCCCAGAGAGGACAGAAACTACTGgGTACAGTTAATAAGCTTGGTGTGAGTCACGTGGGCTGTTTGGTCCATGGCTGTTTCAACGCCAGCGTTCCGAAGCCAGCCCACGTCACCATGGAGACCTGGAGGGAGGCAGGACCCAGGATAGGGGCGGAGCTGGAGTTTGAGGTCTGTCAGCTAGACGCAGACATAGTCGGAGTACTGCTGATCAGAGGAAGACTTGGCAGGACACGGGTTCAGGAGCTGATGGCAGCTGGAGAGAGTTCTGATCCTACTGACCCCGCGGAACAGCTAGAGGAACCAGACGCAGAACCTGCTCTAGAACCCAACCAGGACTGGCCCGACGCCaccgtcaaacccaagaagaagaagaaaaaggagaaacacagagaggaggTGGCTTCAGTACCAGCCCCCGGAGCCGTTGTCGTAGGAACAGCGGAGGACAGCAGCACTAACGGCCACACTGAGacgaggaagaagaagaggaaggagaaacGACAGAACGAAGAGGATGAGGAGAAAGAAGTGGGGGGGGAGGGTCCTGTGGAGGTGCAGGGGAGCGACTCCAGTGGTTACCTTAGTGACAAgccaaacaggaagaggaaacAGGGTGACGATATCACGTCCTGTCTCCATGGAGATCCTGAAACGCCCAAAactaagaagaaaaaaaataaatgatGTCACTGCGACTAAAATTGAGTGAAACTGAATGAACATTAAAAGATGATGATGTTGACTAATGGAATGTCTTAACTACACCCGGTGACATAGTTTGGTTCCATCTTCAGCCCTATATGTGGCCTCCCATACTGTTGGAGTGGTCCGTGTCTCTCTCTTGATGCAGCTCTTTGTGTAGTTCCCTTTACAAACCTGCAGAGGGAGCCAAGTCATTTCTAGAAGCCTCCATGGCTCTTGGTAAAGAACTCCAGTGTTTGTTAGCCAGGTTTTACCCTTCTAGCTATCGTTAGAACGCATCAACATGCTGTAGGGCTATTCATCACGGCTTTACCACGGTCTTcaaatctgaaatggcaccctattccctacattgtgcactaGTTTGGGCTAGGGTTGATAGGGCTATCATATAGgttgtaaagtagtgcactatgtagggaattagGGTTTCATTTGGAATGGAGATGTTTTGTTGTCAAGGCCCCAGAGGGAAGAGATGTTGCCAGGGTCTAGTCCTACATTTGGATAGGTGACACATTGAAGACTTCAGCAAAGCAGAGAAAAGTGTTTTTATTAATTAAATAATATTACATTTGGAA

Function

NR:

description
DNA-directed RNA polymerase I subunit RPA43

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function

KEGG:

id description
K03004 RPA43; DNA-directed RNA polymerase I subunit RPA43

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559827.2 True 1768 mRNA 0.50 4 10670248 10675600

Neighbor

gene id symbol gene type direction distance location
LOC110487909 LOC106570592 coding upstream 1196 10666690 ~ 10669052 (+)
btd LOC106570600 coding upstream 83811 10578406 ~ 10586437 (+)
LOC110487905 LOC106570604 coding upstream 101518 10541656 ~ 10568730 (+)
LOC110487904 snrpd1 coding upstream 148850 10509464 ~ 10521398 (+)
LOC110489373 LOC106570620 coding upstream 160966 10507093 ~ 10509282 (+)
LOC110489377 LOC106588728 coding downstream 83451 10759051 ~ 10809399 (+)
il6 il-6 coding downstream 326448 11002048 ~ 11004436 (+)
LOC110487935 LOC106570554 coding downstream 517450 11193050 ~ 11234468 (+)
LOC118946500 LOC106570575 coding downstream 587932 11262547 ~ 11278404 (+)
LOC110487925 LOC106570566 coding downstream 877749 11553349 ~ 11656524 (+)
G2295152 NA non-coding upstream 400 10669429 ~ 10669848 (+)
G2295147 NA non-coding upstream 6915 10662631 ~ 10663333 (+)
G2295101 LOC106570616 non-coding upstream 72137 10595434 ~ 10598111 (+)
G2295090 NA non-coding upstream 95061 10550102 ~ 10575187 (+)
G2295089 NA non-coding upstream 96831 10549140 ~ 10573417 (+)
G2295163 NA non-coding downstream 30162 10705762 ~ 10706065 (+)
G2295698 NA non-coding downstream 78297 10753897 ~ 10754122 (+)
G2295701 NA non-coding downstream 82615 10758215 ~ 10758714 (+)
G2295711 NA non-coding downstream 109875 10785475 ~ 10785798 (+)
G2295712 NA non-coding downstream 111018 10786618 ~ 10787039 (+)
LOC118946540 NA other upstream 346660 10318805 ~ 10323588 (+)
G2294925 NA other upstream 538597 10130116 ~ 10131651 (+)
G2294452 LOC106570648 other upstream 1332493 9335335 ~ 9337755 (+)
G2294081 NA other upstream 1567062 9094792 ~ 9103186 (+)
G2296150 LOC106570575 other downstream 609893 11285493 ~ 11290303 (+)
G2296278 NA other downstream 887947 11563547 ~ 11564590 (+)
LOC110487932 LOC106570557 other downstream 1231107 11906205 ~ 11910366 (+)
G2296450 NA other downstream 1239596 11915196 ~ 11977297 (+)
G2298390 NA other downstream 2954462 13630062 ~ 13630795 (+)

Expression


Co-expression Network