LOC110489377 (LOC106588728)


Basic Information

Item Value
gene id LOC110489377
gene name LOC106588728
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 10759051 ~ 10809399 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971573.1
TCAAGGTTGAAACATTGCAAAGAAGAAACAAATCATTTGTTATTCGAACGGGCTCAGTCTCTCCTGGGACGCAGGATGTGCTGGGGAATGCACAAAACAACAGCTGCTacgatgagagagaaagagagatgtctCGTTTTCACTTTCTCCTTTTCGCTTTAAAGCTTGCCGGGTGATTCTACATGAAGCAGATGAATGGggggaaatttaaaaaaaaatgcaccGATGCACCAACGACCACCGTGCATTCCCGGCGCTGCTTCTTGTTAGCGCGGACGCAAGGTATTTCCCGGTTGATTATCGGATAGTGTCAGTAGTAGCCTGTGACCGGAGCTGCTGCTGGTGTCTCGACTACAAGCCTGCTCCTGGTGTGGATATGACTTCCTGGCTACGTAAATACGACAATCCTGTGCTGCTCTTCCTGCTTTTGGCCGCTAACATCACCAGCGGGAGCTCTCATTCCGGTGAGAGTGTGTGTTCGTCTCCTCCTGTCTCATCATGTTCAGAGTGCCTCCAACGCGGACCACGGTGTGCCTGGTGCTTTCAGGAgCGTTTCCTGGATGGAGCTGAGGTGGGAGAGCGCTGTGACCTGGCAGTGACCCTGGCCAGGAGGGGGTGTGGCCTAGAATTCATAGAGCATCCAGAGGTTATGGTGGAGGTCAACCCTACGACCAGCAGAACCCAGGTTTCACCTGGAGAGATCACACTCACACTCCAACCAGGTGCTGAGGCCAGTGTGGTAGTAGCAGTACAACAGTTAGAGAGGTATCCTGTTGATCTGTACTACCTGGTGGACGTATCAGCATCCATGCAGGACAACCTGGACCAGCTGAAGAAGGTGGGCGTGGCCTTGTCCACCCGTATGAGAGAACATTCCAGTGATCTGCGCCTGGGGTTCGGCTCCTTTGTCGACAAAAATGTCTCACCCTACATCAACGTACACCCCTCCAAGATAAACAACCCCTGCAGTGACTACGAGGTGAAGTGTCTTCCAGCTCATGGCTTCCACCATGTTCTTAGTATGACGTCCAACATGTCAGAGTTTACACGCATCATCAAGAGACAGAGGATATCAGGCAACATGGACACACCTGAGGGAGGGCTGGATGCTATGCTGCAAGCTACTGTATGCCAgGGAGAGGTGGGTTGGCGTGGGGAGGCCAAGcgtctgttgttgttgatgacaGACCAGCCTTCTCACCTGGCGTTGGACAGCAGACTGGCTGGTATAGTCACACCCCATGATGGACTCTGTCATCTGGAGAACAGTGTTTATATGAAGAGTTCTAccatgGACCATCCCAGTTTAGGCCTGCTGGCCGAGAAGCTTCTAGAGAACCACATCTATCCTCTCTTTGCTGTGGAACAACTACAATATCAGTGGTATGAGGAGCTGGTCACGTTGCTACCGGGCTCCAGTCTAATGTTCCAGGCTCCCAACCTCATAGACCTGGTAGTGGATGCatacaagaggTTGTTGTCAGTTGTCCAGGTGTCTGTGTCAGTGGAGGACAGAGCGTTCAGTCGTTTTCTGGTCAGTGTCTCTCCTCTTTGTCCGGAAGGATCTGAATCCCACGACCACAGCTGTTCCAATGTCCAGCCCAACCAGACGGTCTACTTCAACATCACCATCGGCCTGCTGTCCTGTCCTGACGATGATGAGGAAGATGACGTGGTCCAGGTCTTCGTCAGGCCCGTGGGTTACAATGAGTCAGTCGTCATCAAGGTTCGATCACGATGTCGCTGTCACCGTTGCCACGACGACGCAACCCACCAGTCGTCTTGTGGAGAGGACACCCCAGACACAGATCATAATAATCAagaagtcaacacacacacacacctctcacacacacacagctctcacacacacacaccggagttGGACCTAGAGCACACACACTCCCAGGAGGGGCCGCGGCAGTGTGGTGCGGAGGCATCACGGGTGGACTGTAGCGgccggggagtgtgtgtgtgtgagaggtgtgtgtgtgagaggaacAGTCTGGGGACGGTGTATGGAACATACTGTCAGATGGACGACTACTCCTGCCCCTACCAACACGAAATACTGTgtggaggacgaggtgtgtgtgtgtccggtgaGTGTGTTTGTGAGGAGGGCTGGACAGGGGAGAGCTGCGGGTGCCCGGTCTCCACGGCAACCTGCCTGCTCAACAACGGGTTGCTATGCAGTGGGcgtggcaggtgtgtgtgtggcaggtgtgtgtgtgatgaccaTCAACATTCTGGAGAGTTCTGTGAGAAATGCCCCACCTGCCACAGCTCCTGTCAGTCACACTGGGGGTGTATAGACTGTCACTTGTCTCACGGTCTGTCTCAGAGAAAGATGGGGCATTGCAACCATACCTGCCCCCCATTGGTGGTTTATGTCAATGATGTCACAGgTGAGGGATGGAGACAGTGTGTTTATATGAAAGACagttcgttctctctttctcctgttaggTGAGGGATGGAGACAGTGTGTTTATATGAAAGACagttcgttctctctttctcctgttaggTGAGGGATGGAGACAGTGTGTTTATATGAAAGACagtttgttctctctttctcctgttaggTGAGGGATGGAGACAGTGTGTTTATATGAAAGACagtttgttctctctttctcctgttaggTGAGGGATGGAGACAGTGTGTTTATATGAAAGACagttcgttctctctttctcctgttaggtgagg
>XM_036971572.1
AAGGTTGAAACATTGCAAAGAAGAAACAAATCATTTGTTATTCGAACGGGCTCAGTCTCTCCTGGGACGCAGGATGTGCTGGGGAATGCACAAAACAACAGCTGCTacgatgagagagaaagagagatgtctCGTTTTCACTTTCTCCTTTTCGCTTTAAAGCTTGCCGGGTGATTCTACATGAAGCAGATGAATGGggggaaatttaaaaaaaaatgcaccGATGCACCAACGACCACCGTGCATTCCCGGCGCTGCTTCTTGTTAGCGCGGACGCAAGGTATTTCCCGGTTGATTATCGGATAGTGTCAGTAGTAGCCTGTGACCGGAGCTGCTGCTGGTGTCTCGACTACAAGCCTGCTCCTGGTGTGGATATGACTTCCTGGCTACGTAAATACGACAATCCTGTGCTGCTCTTCCTGCTTTTGGCCGCTAACATCACCAGCGGGAGCTCTCATTCCGGTGAGAGTGTGTGTTCGTCTCCTCCTGTCTCATCATGTTCAGAGTGCCTCCAACGCGGACCACGGTGTGCCTGGTGCTTTCAGGAgCGTTTCCTGGATGGAGCTGAGGTGGGAGAGCGCTGTGACCTGGCAGTGACCCTGGCCAGGAGGGGGTGTGGCCTAGAATTCATAGAGCATCCAGAGGTTATGGTGGAGGTCAACCCTACGACCAGCAGAACCCAGGTTTCACCTGGAGAGATCACACTCACACTCCAACCAGGTGCTGAGGCCAGTGTGGTAGTAGCAGTACAACAGTTAGAGAGGTATCCTGTTGATCTGTACTACCTGGTGGACGTATCAGCATCCATGCAGGACAACCTGGACCAGCTGAAGAAGGTGGGCGTGGCCTTGTCCACCCGTATGAGAGAACATTCCAGTGATCTGCGCCTGGGGTTCGGCTCCTTTGTCGACAAAAATGTCTCACCCTACATCAACGTACACCCCTCCAAGATAAACAACCCCTGCAGTGACTACGAGGTGAAGTGTCTTCCAGCTCATGGCTTCCACCATGTTCTTAGTATGACGTCCAACATGTCAGAGTTTACACGCATCATCAAGAGACAGAGGATATCAGGCAACATGGACACACCTGAGGGAGGGCTGGATGCTATGCTGCAAGCTACTGTATGCCAgGGAGAGGTGGGTTGGCGTGGGGAGGCCAAGcgtctgttgttgttgatgacaGACCAGCCTTCTCACCTGGCGTTGGACAGCAGACTGGCTGGTATAGTCACACCCCATGATGGACTCTGTCATCTGGAGAACAGTGTTTATATGAAGAGTTCTAccatgGACCATCCCAGTTTAGGCCTGCTGGCCGAGAAGCTTCTAGAGAACCACATCTATCCTCTCTTTGCTGTGGAACAACTACAATATCAGTGGTATGAGGAGCTGGTCACGTTGCTACCGGGCTCCAGTCTAATGTTCCAGGCTCCCAACCTCATAGACCTGGTAGTGGATGCatacaagaggTTGTTGTCAGTTGTCCAGGTGTCTGTGTCAGTGGAGGACAGAGCGTTCAGTCGTTTTCTGGTCAGTGTCTCTCCTCTTTGTCCGGAAGGATCTGAATCCCACGACCACAGCTGTTCCAATGTCCAGCCCAACCAGACGGTCTACTTCAACATCACCATCGGCCTGCTGTCCTGTCCTGACGATGATGAGGAAGATGACGTGGTCCAGGTCTTCGTCAGGCCCGTGGGTTACAATGAGTCAGTCGTCATCAAGGTTCGATCACGATGTCGCTGTCACCGTTGCCACGACGACGCAACCCACCAGTCGTCTTGTGGAGAGGACACCCCAGACACAGATCATAATAATCAagaagtcaacacacacacacacctctcacacacacacagctctcacacacacacaccggagttGGACCTAGAGCACACACACTCCCAGGAGGGGCCGCGGCAGTGTGGTGCGGAGGCATCACGGGTGGACTGTAGCGgccggggagtgtgtgtgtgtgagaggtgtgtgtgtgagaggaacAGTCTGGGGACGGTGTATGGAACATACTGTCAGATGGACGACTACTCCTGCCCCTACCAACACGAAATACTGTgtggaggacgaggtgtgtgtgtgtccggtgaGTGTGTTTGTGAGGAGGGCTGGACAGGGGAGAGCTGCGGGTGCCCGGTCTCCACGGCAACCTGCCTGCTCAACAACGGGTTGCTATGCAGTGGGcgtggcaggtgtgtgtgtggcaggtgtgtgtgtgatgaccaTCAACATTCTGGAGAGTTCTGTGAGAAATGCCCCACCTGCCACAGCTCCTGTCAGTCACACTGGGGGTGTATAGACTGTCACTTGTCTCACGGTCTGTCTCAGAGAAAGATGGGGCATTGCAACCATACCTGCCCCCCATTGGTGGTTTATGTCAATGATGTCACAGgTGAGGGATGGAGACAGTGTGTTTATATGAAAGACAACTGTCGCTATCGCTTCTACACTGAGCTGTTCACAGGAAATAATCAGCTACACATCAACACACAGCCTgAGTGTGTATCCAGAGGGCGGTACATGAGgatgtttgtcagtgtgtgtgtgttgacattcCTCTCTGGCCTGGTGATGATCGCTGTACTGGTGTTGCTGCTGCAGAGACAATCCCTGCCACAGGGTGGCGCCACTGACCCACAATACAACCCCACTGGCAAGGACCAGTCCTACATCCCAACCaccaatgagaagaccacatccTACTGGAGGAACTGCCCCCTGGACCCTGACCAGCCAATGGAGATGTATATCACCATTCCAAAGATGCCTATGGGTGAACCCTGGCAGTGAAGTTGTCTGGGGTTGAAGTTCAGAGGTTGAAGTGGGCCGGTGCTGACCGGTACAGAGAAGCAGCATGTCTAATGTTCTACTGCTTATAGAATACTGACTCTGAAATATGAAATCCTTTAACAGTTCAATTACAGTGAGTACAGTGATCTTTTTGAGTCCACTTCAATCACTGGTTACAGGTTAGGGGAAGGATAGTACAAATCTGAACAGGGCAACAAATAAGAGTCTTTTTTTTTCTGTGGCTCTATGGACTGGCAGCCATTGAAAGGTACATCGATCATTGATGTATTTAAAAATGCTAATTATGCTTTTATCACCGTGAACACTACAGGGTTACAATTTACTGGATCTCTCTCATCACGGCTCAACCTAGGTGTCCTGCGCTAGCCTCCCACCTAGTGGTCGGTGGTGGAATGACACACAGCAGAATGTATGGACAGATGGATGAGTGACTGAATGGTGGCTCTCACACactttattttgtgtgtgtgagtttgtgtacCTGACATAACTGGAGTTTTTAGAGGACAGGTAGCCTCAAATGGTTGTCACTGTACAGAATGCATCTAGTTTTAATATTTGAAGCAAGCATTAGTTTATTAAATAGGCATTAGATTTGAGATTTGAGCTAGCATCATAGTGTTGCGTCAGACTACTGAGAATTAATTGGCTCCTGAACTCTTAGGGAGGAGCTGATTAACTCCTGAACTATGGGGTGACTGCTGATTGGCTCCTGAACCACTGGGAAGGCTCCTGATTGGCTCCTGTAGTGGGAAGGTTCATGATTGGCACCTGAACGTTCCATTTCTATCTGCATGAATTCCAGAACTATGAAGGATAattaataatacatttttttaggTTTTCTGTTTTTCTCTACATCTGATGTCTGATGTTTACGGCATAAGTTGATAATTTATTTAGTCAAGaactttattattatttattatgatttatttccaattgtttttttgtgttgtttttgttgttgtatgtttGTATGGCTATAATATTACAGGACTGTAGCTCTGTTAAATTAATCTGCAATAATAACAACTGGAAGACACATTACGTCAAACACTTTCAAAGACTGGTAGCCATCGTCTCACGTCACGAAGCTTGACTACTCCCGTCTGCACTGCGTAGTTCATGGCAACGCATCTGTCGGGAAGACAATGAAGAGTACCTGTAGAAGGTCTTTGTTACACGTTCATAACCCTCATTCATAAGCAGCACTTAAGAATTTTGTCAACACAACTTATGTCATGTCGATCATTTCTGCGTGAGGGACATCACCGTCTTTGTCCAGTAAAATGGAACCATAGCAATACTCCCGAAAGTTCAAACTCGTAAATCTAAATGGAGCCTATTTGAACTCAGCCTGCTAACTGGGCATTATGTTTGTATATTAACAGCACTTTTCTGTATATTTTCTGTAATGTCATGTGATTAAGAGTTCCTGTAACATGATTAAACGTGTCAGATTTCTACTGA

Function

NR:

description
PREDICTED: integrin beta-8-like

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06591 ITGB8; integrin beta 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971573.1 False 2719 mRNA 0.52 14 10759051 10795090
XM_036971572.1 True 4298 mRNA 0.48 16 10759053 10809399

Neighbor

gene id symbol gene type direction distance location
polr1f twistnb coding upstream 83451 10670248 ~ 10675600 (+)
LOC110487909 LOC106570592 coding upstream 89999 10666690 ~ 10669052 (+)
btd LOC106570600 coding upstream 172614 10578406 ~ 10586437 (+)
LOC110487905 LOC106570604 coding upstream 190321 10541656 ~ 10568730 (+)
LOC110487904 snrpd1 coding upstream 237653 10509464 ~ 10521398 (+)
il6 il-6 coding downstream 192649 11002048 ~ 11004436 (+)
LOC110487935 LOC106570554 coding downstream 383651 11193050 ~ 11234468 (+)
LOC118946500 LOC106570575 coding downstream 454133 11262547 ~ 11278404 (+)
LOC110487925 LOC106570566 coding downstream 743950 11553349 ~ 11656524 (+)
LOC110487927 LOC106588816 coding downstream 854601 11664000 ~ 11742813 (+)
G2295701 NA non-coding upstream 337 10758215 ~ 10758714 (+)
G2295698 NA non-coding upstream 4929 10753897 ~ 10754122 (+)
G2295163 NA non-coding upstream 52986 10705762 ~ 10706065 (+)
G2295139 NA non-coding upstream 63264 10648803 ~ 10695787 (+)
G2295152 NA non-coding upstream 89203 10669429 ~ 10669848 (+)
G2295694 LOC106570586 non-coding downstream 5539 10814938 ~ 10816360 (+)
G2295721 NA non-coding downstream 8113 10817512 ~ 10817834 (+)
G2295733 NA non-coding downstream 22571 10831970 ~ 10908016 (+)
G2295704 NA non-coding downstream 24956 10834355 ~ 10891081 (+)
G2295742 NA non-coding downstream 36016 10845415 ~ 10846724 (+)
LOC118946540 NA other upstream 435463 10318805 ~ 10323588 (+)
G2294925 NA other upstream 627400 10130116 ~ 10131651 (+)
G2294452 LOC106570648 other upstream 1421296 9335335 ~ 9337755 (+)
G2294081 NA other upstream 1655865 9094792 ~ 9103186 (+)
G2296150 LOC106570575 other downstream 476094 11285493 ~ 11290303 (+)
G2296278 NA other downstream 754148 11563547 ~ 11564590 (+)
LOC110487932 LOC106570557 other downstream 1097308 11906205 ~ 11910366 (+)
G2296450 NA other downstream 1105797 11915196 ~ 11977297 (+)
G2298390 NA other downstream 2820663 13630062 ~ 13630795 (+)

Expression


Co-expression Network