Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110487914 |
| gene name | cpne4 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_050572.1 |
| NCBI id | CM025859.1 |
| chromosome length | 41837469 |
| location | 11106026 ~ 11192970 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| cpne4 | Predicted to enable calcium-dependent phospholipid binding activity. Predicted to be involved in cellular response to calcium ion. Located in extracellular exosome. |
| description |
|---|
| PREDICTED: copine-4 isoform X1 |
| id | description |
|---|---|
| K24525 | CPNE4_6_7; copine 4/6/7 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036970664.1 | False | 1982 | mRNA | 0.49 | 18 | 11106026 | 11153352 |
| XM_036970665.1 | True | 1896 | mRNA | 0.48 | 18 | 11106026 | 11192970 |
11,040,000
11,050,000
11,060,000
11,070,000
11,080,000
11,090,000
11,100,000
11,110,000
11,120,000
11,130,000
11,130,000
11,140,000
11,150,000
11,160,000
11,170,000
11,180,000
11,190,000
11,200,000
11,210,000
11,220,000
NC_050572.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110487917 | LOC106570580 | coding | downstream | 64815 | 11009131 ~ 11041211 (-) |
| LOC110487912 | LOC106588797 | coding | downstream | 153551 | 10868295 ~ 10952475 (-) |
| LOC110487913 | LOC106570587 | coding | downstream | 238885 | 10843932 ~ 10867141 (-) |
| LOC110489378 | LOC106570586 | coding | downstream | 268635 | 10815696 ~ 10837391 (-) |
| LOC110487911 | LOC106570591 | coding | downstream | 414213 | 10682548 ~ 10691813 (-) |
| LOC110487919 | LOC106570575 | coding | upstream | 81285 | 11274255 ~ 11455993 (-) |
| fabph | fabph | coding | upstream | 349230 | 11542200 ~ 11543609 (-) |
| LOC110487921 | mrpl53 | coding | upstream | 352269 | 11545239 ~ 11548738 (-) |
| LOC110487928 | LOC106590894 | coding | upstream | 574324 | 11765257 ~ 11811708 (-) |
| LOC110487933 | LOC106570558 | coding | upstream | 723998 | 11916968 ~ 11929892 (-) |
| G2296034 | NA | non-coding | downstream | 4915 | 11100691 ~ 11101111 (-) |
| G2295997 | NA | non-coding | downstream | 20587 | 11033924 ~ 11085439 (-) |
| G2295989 | NA | non-coding | downstream | 45982 | 11017425 ~ 11060044 (-) |
| G2295960 | NA | non-coding | downstream | 97300 | 11004168 ~ 11008726 (-) |
| G2295973 | NA | non-coding | downstream | 128424 | 10976509 ~ 10977602 (-) |
| G2296529 | NA | non-coding | upstream | 43417 | 11236387 ~ 11236698 (-) |
| G2296531 | NA | non-coding | upstream | 46090 | 11239060 ~ 11239434 (-) |
| G2296532 | NA | non-coding | upstream | 47409 | 11240379 ~ 11240618 (-) |
| G2296535 | NA | non-coding | upstream | 54961 | 11247931 ~ 11248208 (-) |
| G2296536 | NA | non-coding | upstream | 62953 | 11255923 ~ 11256191 (-) |
| G2295895 | NA | other | downstream | 317467 | 10788107 ~ 10788559 (-) |
| LOC110489370 | clasp2 | other | downstream | 896201 | 10205530 ~ 10316136 (-) |
| LOC110487895 | LOC106570596 | other | downstream | 1067377 | 10014678 ~ 10038693 (-) |
| LOC110487885 | LOC106570639 | other | downstream | 1434466 | 9667465 ~ 9705713 (-) |
| G2294565 | NA | other | downstream | 1662286 | 9443280 ~ 9443740 (-) |
| G2296582 | NA | other | upstream | 288635 | 11481605 ~ 11488380 (-) |
| LOC110487923 | LOC106588825 | other | upstream | 939648 | 12130756 ~ 12146683 (-) |
| G2298681 | NA | other | upstream | 2457731 | 13650701 ~ 13651184 (-) |
| G2298700 | NA | other | upstream | 2509731 | 13702701 ~ 13702996 (-) |
