LOC110487935 (LOC106570554)


Basic Information

Item Value
gene id LOC110487935
gene name LOC106570554
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 11193050 ~ 11234468 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559855.2
TGGCAGGTTTGTGGCTGAGAATATGCTAAACGCTCTGTCATTGGCTGCTTCCGAGTAAACAGTGCTTTGGCATAGCAATTGATATCCTACAGCTGGAAGGTAGTGTTTGTCACACAAAGTGAGAGGGCTCAGAAAGTGTACGAAAGCTTAATGTAGGGTCTCAAAAGGAGGGATACCGaggttgtttatttttttaaagagagGTATAGACCAAAGCTAAACTATTAGATTGCCAAAATGCTTTGCCATGTTACCCGGCCGGATTCGGTGGTTATGGAAGTGGAAGTTGATACGAAGGCGAATGGTGAAGACTGTCTGAATAAGGTGTGTAGGAAGTTGGGAATCCTAGAGGTGGACTACTTTGGCCTGCAGTTCTCAGGCAATAAAGGAGAGAACCTGTGGCTCAACCTCAGGAACAGAATCTGTCAGCAGGTGGACAATCTGACTCCCTGCCGACTCCGGCTTCGAGTCAAGTTCTTTGTGGAACCACATCTCATACTCCAGGAACAGACGAGACATGTGTTCTTCATGCAGGTCAAGGAGAACCTCCACAGCGGCCACCTGAGGATGTGTTCGGAGCAGGCTGAGGAGCTGAGTGCCCTGCTGGCCCAAGCTGAGTTCAGAGACTACAACCAGAACACAGCCAAGTACTGGTACTTTGAGCTGTGTGGGAGCGAACCCTGCCCGGCAACAGTCAACAGTATCATCTCTAAGCACAAGGCGTTGGAGGGTCAGAGCCCGGGGTCGGTGGAGTACCAGGCCCTGCAGCTGGTGTCCAGTCTGGAGCACTACGGGGTGGAGTGGCACTGGGCCAGGGACGCAGAGGGACAGAGGCTGGCCATAGGGGTTGGCCCTGAAGGTATCGCTGTCTGTAAAGAGGACTTCAGCCTGGTCAACAGGATCAGCTATCCCATAATACAAACAGCCACCCAGTCAGGGAAGAGTGTTTACCTGACGGTGACCAAGGATACCAGCGACAGTGTGGTTCTGCTATTCAAGCTGATCAGCAACCGGGCAGCAAGCGGACTGTACCGGGCCATCACTGAGACACACGCCTTCTACAGgtgTGACACGGTAACCAGCGCGGTGATGATGCAGTACAGCCGTGACTTCAAGGGTCACCTGGCGTCTCTCTTCCTCAATGAGAACATCAACCTGGGCAAGAAGTACGTCTTCGACATCCGACGCACCTCCAAGGAGGTCTACGACTACGCACGCCGGACGCTCTACAACGCCGGAATCATGGCGGCGGTTGGCGAGAGGACGCCATCGGGGCTCAGTCCACTGCGTGGCCAGGAGGAGGGGCTGGGAGAGGACTGTGGGAGCTGTCAGCAGAGCAGGGCGCTGCTGGAGAGACTAGATAAACTCAGAGAAGCTCTGCTGTGTATGTTGTGCTGTGTGGAGGAGATCGACTCAGCCTTCTGCCCCTGTGGACACATGGTGTGCTGCCAGACCTGCGCCAACCAACTACAGTCGTGTCCGGTGTGTCGGTCGGAGGTGGAACACGTGCAGCATGTCTACCTTCCCACCTGCACCAGTCTCCTGAACTTCACCACCACCTCTCACCATGGCGACGACAGCCCCGGTCCCATCCACAGAGCTATGTGTGGTCTAGGACACACCTGCCACACCAAGGACTACTGCAACACCAACACCCgacacgactccaacaacatcTACCACACAGAGACATAGAACCACTTCACCACTACCAGGCTGTGTACCAAATGTCTCCCTGGCACTACATGGGGAATCGGGTGCAATTTGGGAAGCAGCCCAGTCCAGTTCCAACACCATTGGGTTCTGTTGGGTTGTTTTCACCGTGCCACTCTCCCTGACGATGGTATTTTCTCCACTCCCCACTGTAAATGATATGGATTATTTAAACCAATGATGGACTTGGGATTTtttttaataacctcccctcccTTTTAGATTTAGGTTTATTGCATATTATTTAGTTTTAATCTAATTTCATCAGTTGATCTGATCTGAATTAGTGGCGttatttttgatttatttcaccattttttggttgtgttgttgtttttctccaTATTGGTCTACAGAACGTGAATTATGTATTGGGCTCATAACCTGCAGCGTTTGTACAAGACGAGGACATTCTGTGTTCTAGGAGAGTACTAGGCAACGTAGAGTCATTCAGTTTTAAATGGTTCTTTTTAAGCTTTGAGAACCTCATTTCATGGTTCTAATGGAGTGAAATGCGTTTCATTTTTGTTGTTCGTTTCCTGTTTAGGTGTTTGTTTCCCATGTAGTTCCTATGGTTTCCATGCCAATGAGAAGGTATCTGACGGGTAGGAAGCTGATggaatgcgtcccaaatgacatgCTATTCCTTATATGTTGTGCACTactttgggctctggtcaaaagtagtgcactatatagggaatagcatgTCATTTGGGATACCGTTGTGGGTAAGCCTTGACGATAAGCCCAGTATTATTCTCTTCATGGGTTCTGGAACCAAACAAGAACTTTGACAGGGAAAGAGAAATGGTTGAATGACCCTCAGAAAAAAGACCAGATTCAAACAGAACTCCATGAGCTCCGTCCATTCATTATTTCATCCCATATGAACAGGAACCCACAGAAATGCAGGTCCCCAAAATAAGATGTTTTAATTATTCCCTGATTTTTATTTATTGCtaaggctgtttttttttttctccaattttttTTCTAGCCttatcccagatctgtttgtgttgcatCACTAACCCAGACCATAGGAGTTAGTTAtataacacaaacagatctgggatcagccaCTACTGTGTATTCTGTGatcagtatttctgttttttatgtgGTCAACTAGTGAGTTCCTTATGATTTCATTATTAAAGGGTACTAGTCTTATCAGTGCAATACTAGCTGCTTTTTGAAAAGCCTTTCTACGTATTTTTAgggcaaaatattttttttctatcTACATTCACTTTACCAAGGAATCTCCCCAAGTGAATTATCTGTAGGGTTTTGCCTTATTAATGTAGCAACATGGGGTTTgtcttccaaatggcaccctattccttacgtagtgcactacttttgaccagggcccataggattctggtcaacagtagtgcactgaatagggaataggctgccattttggTATGCGTTCGTTCTTTGCACAGACTTTATTTGTTTTGAAAGATGATGATGAATGTTTTCTTTATGGCTGGAACCATTTGGCACATTGTCACTGCAGGGGATTGATGCTTTTATTCACTTTGTACAAGTAGGATTTGTTTCTGTTTTTTTGAAGCAAAAACCTATGCTCTGTAAATGTAGAAAGAAATTACTTTGGATCTTTTGTATGTTATTTCTTTGAATGAGAAAAGTGTTAATaaagttgttttt

Function

NR:

description
E3 ubiquitin-protein ligase MYLIP-A-like

GO:

id name namespace
GO:0030178 negative regulation of Wnt signaling pathway biological_process
GO:0016567 protein ubiquitination biological_process
GO:0007369 gastrulation biological_process
GO:0005829 cytosol cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005515 protein binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
K10637 MYLIP, MIR; E3 ubiquitin-protein ligase MYLIP

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559855.2 True 3396 mRNA 0.46 7 11193050 11234468

Neighbor

gene id symbol gene type direction distance location
il6 il-6 coding upstream 188614 11002048 ~ 11004436 (+)
LOC110489377 LOC106588728 coding upstream 383651 10759051 ~ 10809399 (+)
polr1f twistnb coding upstream 517450 10670248 ~ 10675600 (+)
LOC110487909 LOC106570592 coding upstream 523998 10666690 ~ 10669052 (+)
btd LOC106570600 coding upstream 606613 10578406 ~ 10586437 (+)
LOC118946500 LOC106570575 coding downstream 29064 11262547 ~ 11278404 (+)
LOC110487925 LOC106570566 coding downstream 318881 11553349 ~ 11656524 (+)
LOC110487927 LOC106588816 coding downstream 429532 11664000 ~ 11742813 (+)
LOC110487931 LOC106570561 coding downstream 580639 11815107 ~ 11841142 (+)
LOC110487932 LOC106570557 coding downstream 671737 11906205 ~ 11910366 (+)
G2296114 NA non-coding upstream 7953 11184808 ~ 11185097 (+)
G2296107 NA non-coding upstream 12070 11180756 ~ 11180980 (+)
G2296097 NA non-coding upstream 23596 11169255 ~ 11169454 (+)
G2296069 NA non-coding upstream 36365 11156389 ~ 11156685 (+)
G2296068 NA non-coding upstream 36933 11155726 ~ 11156117 (+)
G2296139 NA non-coding downstream 1219 11235687 ~ 11236407 (+)
G2296142 NA non-coding downstream 11145 11245613 ~ 11245818 (+)
G2296143 NA non-coding downstream 12615 11247083 ~ 11247416 (+)
G2296178 NA non-coding downstream 98105 11332573 ~ 11387113 (+)
LOC110487904 snrpd1 other upstream 671743 10509464 ~ 10521398 (+)
LOC118946540 NA other upstream 869462 10318805 ~ 10323588 (+)
G2294925 NA other upstream 1061399 10130116 ~ 10131651 (+)
G2294452 LOC106570648 other upstream 1855295 9335335 ~ 9337755 (+)
G2294081 NA other upstream 2089864 9094792 ~ 9103186 (+)
G2296150 LOC106570575 other downstream 51025 11285493 ~ 11290303 (+)
G2296278 NA other downstream 329079 11563547 ~ 11564590 (+)
G2296450 NA other downstream 680728 11915196 ~ 11977297 (+)
G2298390 NA other downstream 2395594 13630062 ~ 13630795 (+)

Expression


Co-expression Network