LOC118946500 (LOC106570575)


Basic Information

Item Value
gene id LOC118946500
gene name LOC106570575
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 11262547 ~ 11278404 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005041365.1
CTTACATCCACATTGAATCGAGGTGAAACTTAACCATTGGGTTTGTGGACGTGTTTACGTTTTGTCTGCCTGAGTTGGTTATCCAGCGGTACGGGCTTCTATTGACAAGACGTCCAACAACAGTCACGTTTCAACAAAGGAATCCTGATTGAATTCTGTTCATTTTAAAACCAAAAAGGTGCCAAAAATGTTTTTGCCAAGAAAGAAACAAAAGTAAAACAACAACATggcaaaaaaacaataaaaacaacaacacattactTTTCATTTTGAAACGCTGAAGCTCAAACCAACATTCATTTTATTAGTTGTTTGTGCAAGAAGTAAATAAGCCAATAAAAACAGACAAGGTCAGCTGGGTGTCCTCCTCCAATGAGGAGGCTTGTCAGAAAGTCACATGACACATTCCCTAAACAGACGTCCAATCTCGAGTGTTACAAAGGAGACCAACACAAGGAAATGGTGGTTGTCAAtagttaccacagtcacaaagtcataaaccccaccTATTTCAACAAATTCTCTTCTTAAAATGGgatttaaacctaaccctaaccgtaatcacactgctaaccgtatgcctaaccttaaagtAAGCTAATTTGTGTTTACATGCATTTTAATCATGTAGCCAatttttactttgtggctgtggtaattaGTGGAAACCGGAAGAGGTCCTATAGACGGGtaggttgtttagcaacaaaaagCACGAgtgcgcaactatggggcaaaacagacggggttggcttagattgttgataacatgtaaactatatttcgtGCCTATTGTTTTTTGAAAACGTAAAtatatttgcacaatgagcacttgctGTCTCTCAaatacagttgttggttagctagctagcaatttgtTTTACCATATTAGCATAGCtgtgacatcagtcaaaacaagacATTGTATCAAGAACAAGTTAAAActtgctgaaacaagccacctaCGATTCCCTACATGACattgtcttgtcattgttgctcgCTGgtcatccagaaccacaacacatGGACTTCTGTCCCTTTGAAGCCCGTAGTGTTCAAGACGTTGTCAGCTAAGCCATCTATTCCGGAAAAGAACCACGGAACCAAGAAACCGCCTCGCGTCTCAACATGTTGGACCCAAGAACGTGCCGGACGCTAGGTGAAATGGAGCAAAGAGTGGAAACACTACGGTTTTCCAAGCAGGCcatatgcaaataaattaatCTGAACaggc
>TU2626613
GGCCACAGTAAGCAGGCGTGGTGTCATGTCACTGGGCAGACACTAGGAGGAGCTCCTGTTTTCTGTGTTTCCAGAACTCAGCGATACAAACACAGGGGCCGGTGTATCCTGGAGAAAGCGTGTCCTGTCTTGGTGCTGAAACCATGACAACGTCTTTGTTTTTGGTTGGCTCCCTCTTTTATTAAACATTGTCTGTTGGGTTGAGGAGTGGGGGATGTATGGGCTATGTATATTTGTTTGAAATATTATATTACAGAAGTAGCCTACAATATTTTATAGATTATTAATTGGCAACATTTTAAAACTTTAAGCACATTAATTTGCCCATTTCTTGAAGATATTTCAaggtttattttcttttttttcttcttaagaGTTGTGTTCTTACAGATCTCTAATACACTGACCATTTGGTTTGCTATTGAAGACAGTGACAGACACTGGGGTAGGTGCTGTTTTAATACAgcatctttacaacaggagttgGTTGTTGGATGGTTCTGGCCTGCTATGGTTATCATGTCTTTCCTTGCCTGCCTTAACAGTCCTTGTGTTGTGTCTCAGTTCTTTCCCCGAGTGACTGGCGGTCAGCCATGCGAATGTCCCCACAGGTCCAGTTTGACCCAGAGTCCCACTCCCAGGTGTGTGTTTAACCACTAGGCTGTGTGTTGTGACCAGTAGACAGACAACATTTAATGAACCCCAGCTGACAGAAGACCCATCCCTGGCCCTTCAGTGTGTAGGGGTCAAAGGTGAGAGGTCAGAGGGAGTGACCGTATGTTTGTCTGTCAGCTGGTCATTGTAGATAGATGATGCTACTTCACTGCAGGACCAGAACAACCCCTTTATCCTTACTCAACCTCGATTTTGAGGGCATGCAGCCATCTCCAGCATATACaaatatcagaataataatcCATACCatacattatatttatatatttattatataaatataatcAGTCAAAATAGTAATAATCCATTTCTTACATCCACATTGAATCGAGGTGAAACTTAACCATTGGGTTTGTGGACGTGTTTACGTTTTGTCTGCCTGAGTTGGTTATCCAGCGGTACGGGCTTCTATTGACAAGACGTCCAACAACAGTCACGTTTCAACAAAGGAATCCTGATTGAATTCTGTTCATTTTAAAACCAAAAAGGTGCCAAAAATGTTTTTGCCAAGAAAGAAACAAAAGTAAAACAACAACATggcaaaaaaacaataaaaacaacaacacattactTTTCATTTTGAAACGCTGAAGCTCAAACCAACATTCATTTTATTAGTTGTTTGTGCAAGAAGTAAATAAGCCAATAAAAACAGACAAGGTCAGCTGGGTGTCCTCCTCCAATGAGGAGGCTTGTCAGAAAGTCACATGACACATTCCCTAAACAGACGTCCAATCTCGAGTGTTACAAAGGAGACCAACACAAGGAAATGGTGGTTGTCAAtagttaccacagtcacaaagtcataaaccccaccTATTTCAACAAATTCTCTTCTTAAAATGGgatttaaacctaaccctaaccgtaatcacactgctaaccgtatgcctaaccttaaagtAAGCTAATTTGTGTTTACATGCATTTTAATCATGTAGCCAatttttactttgtggctgtggtaattaGTGGAAACCGGAAGAGGTCCTATAGACGGaaccacaacacatGGACTTCTGTCCCTTTGAAGCCCGTAGTGTTCAAGACGTTGTCAGCTAAGCCATCTATTCCGGAAAAGGGTGTCTACTCACTccccaccaccgccaccaccatcCATCTGTCCATCACCACGGCAATCACCCGCACCCGCCCTCCAGGTCAAGTGACTTGGTGACCCCATGACATCATCATTCCTCTATGACATCATCACGACCCCTTCACTGTTCTAAAGTCCTGCTGTCACagagttctacttcttcctcaaggtaaaataacaaaaacatacAGTACTGTGTTAATGAAGAGAGaccaacaataacaataacgataataataataatagttgtGTTATCATCAGTTGGTGAGTGTGACAGGTGTGCAAACGCAAGTGCTTCAAGACAACATGCTGTCTCTCTCTAAAGACTCAACAGTGACTCTCTGACTGCGTTccaaatggcccctattcccgatacagtgcaccacttttgactagggcccataaggATAGGAGCCTTagtaaaagaagtgcactatatagggtataagGGACCATTTGAGACATAAGCTCTTTCTTTCTGCCATAAAAATGTAAAGGAAAAGGTTGCACCAAGTAAACATCATCTTCCTCTGAATAATCCCATAGTTCATCAACTCAGTGTGAATGTAAATGTATGTAGGGTATAAAGGAATAACATAAACATTTTACTTAACCACCCTGGATCaaattatacatacagtatgtgacccCTGACCTCGAAAGTTTTAGACAATCAtttaaatatatcattatcaacTCAGAACGCTTCAAGAATAATAACAAAATGACTCCACTGTCACCCAAACAAAGGAAGGAAGAGTTCTCTTTTTATGGTGGCCCAGTGGCGCGGCCTGATGACCTCGCCTGGCTGGTCTGGCCCTGCTGGGTGACATCACCTAGCTGAGTGGTCTAGGTGGATGAGTGTCGAGGCATCTGGTGACCCCTTGTTTAGGATTAGATGTGTAGCTCTAACCTTCTGTCAGAGACACATAAAGGTGTTATTATACATCCTTATTCTATTCACGAGGGTTTGAATTTGTTAAAGTCCTTTTTTTTACTGTGTTTTATTTAAAGACGTCTTGAGTCGCTCGGGATAGATGACATCATATCAACTCAGTCTGCCACCACGGCAACGGGTGGCGTGGAGAGTGATTCCGTCCAGACATCCTGAACACTCTCGTCAGTAGTGCCCTCTACCAGGAAGTGATATCACTCAGCGGTCTACATTATGGCAGCTTAGTCATCTCCTAGGCCCTATAGGAAAGCTAACGTTACATATTTAATTCAGTTGTCCACCTGCAGCCATCTAATGACCAGAGAGGTATCAAGCAGCGCTCTTGTATGCCACAAACCCTCCAATAAAACACGTACTATACTTCACAAAACCCCTTGCCCAGAGACTTGTTGACAAATCCAATTGCACCGTTTGCTCGTTTACATAATGCCGAACGCATCAACTACAATGTTATTTTAACATGGACTTAATGTAAGGTGATAACATGGGTCAAATTTAGCCTACAGTAATCCGGATAGAAAATATAAAGAAGAAAAACATCTAAAACAAAGTcgttaaaataaaacatttacgagggcatttatttttttccatctctcctccaatCCCTATATGAATTAACAGTCTTGTTTTAATCTCCTGCCTTCACTACTTGCCTATATTTGACCTGCCTTCGATGCTGATTTTTACCTCCTGAGTGATAAAGGAAGGTTTGGGTAGAGTCAACTGGGGCACCTCCTCGCTCCTCTCCACCTGACGGCCCTCGGGGGCCGACCACCTCCTCTTGCGGCTTGCCGGCTTGGCGGCGCCCCTACTGGATTCTGAATCTCCAGGCTGGCCTCCTTTCAAGTTGACCCCCCCTCCGACGCCGAACCTCAGTTCCCCATTCTCTGAGGCGAACTGAACACCTTCAACCACCATTCCCCCACTGGAGCCTCTATGGCCCACCCCGTTCTCCTGCTCCCCGTGCCTGGCTGACCCCCTTCCACCCCGGGAAGACCTGGAGGGTTTGAGGGGCCCGTGGATGGAGCCCATGTTGCAGCTAGTAGTGATTTCCATGGCCTGGttctgggtctgctgggtcttcTTCAGGGAGCCGTTCCTCAGGTTCTTCAGGGTGAGGGAGATGCAGACGTCCCCCACTGAGAGCTTGGTGCAGGGTAGTTCTAACAGCTGAGTGGTCCGGTCCGGGCAGCACGACGACCAGCCCTGGCCGAATACGAAGAAGGGATACTCCACC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005041365.1 False 1237 mRNA 0.40 2 11263532 11264866
TU2626613 True 3969 lncRNA 0.44 4 11262547 11278404

Neighbor

gene id symbol gene type direction distance location
LOC110487935 LOC106570554 coding upstream 29064 11193050 ~ 11234468 (+)
il6 il-6 coding upstream 259096 11002048 ~ 11004436 (+)
LOC110489377 LOC106588728 coding upstream 454133 10759051 ~ 10809399 (+)
polr1f twistnb coding upstream 587932 10670248 ~ 10675600 (+)
LOC110487909 LOC106570592 coding upstream 594480 10666690 ~ 10669052 (+)
LOC110487925 LOC106570566 coding downstream 288483 11553349 ~ 11656524 (+)
LOC110487927 LOC106588816 coding downstream 399134 11664000 ~ 11742813 (+)
LOC110487931 LOC106570561 coding downstream 550241 11815107 ~ 11841142 (+)
LOC110487932 LOC106570557 coding downstream 641339 11906205 ~ 11910366 (+)
LOC110487934 LOC106570559 coding downstream 666692 11931558 ~ 11959079 (+)
G2296143 NA non-coding upstream 16116 11247083 ~ 11247416 (+)
G2296142 NA non-coding upstream 17714 11245613 ~ 11245818 (+)
G2296139 NA non-coding upstream 27125 11235687 ~ 11236407 (+)
G2296114 NA non-coding upstream 78435 11184808 ~ 11185097 (+)
G2296107 NA non-coding upstream 82552 11180756 ~ 11180980 (+)
G2296178 NA non-coding downstream 67707 11332573 ~ 11387113 (+)
G2296204 NA non-coding downstream 127320 11392186 ~ 11392574 (+)
G2296205 NA non-coding downstream 128946 11393812 ~ 11394057 (+)
G2296230 NA non-coding downstream 168561 11433427 ~ 11435423 (+)
G2296241 NA non-coding downstream 192132 11456998 ~ 11457422 (+)
LOC110487904 snrpd1 other upstream 742225 10509464 ~ 10521398 (+)
LOC118946540 NA other upstream 939944 10318805 ~ 10323588 (+)
G2294925 NA other upstream 1131881 10130116 ~ 10131651 (+)
G2294452 LOC106570648 other upstream 1925777 9335335 ~ 9337755 (+)
G2294081 NA other upstream 2160346 9094792 ~ 9103186 (+)
G2296150 LOC106570575 other downstream 20627 11285493 ~ 11290303 (+)
G2296278 NA other downstream 298681 11563547 ~ 11564590 (+)
G2296450 NA other downstream 650330 11915196 ~ 11977297 (+)
G2298390 NA other downstream 2365196 13630062 ~ 13630795 (+)

Expression


Co-expression Network