LOC110487925 (LOC106570566)


Basic Information

Item Value
gene id LOC110487925
gene name LOC106570566
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 11553349 ~ 11656524 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036971459.1
ATGAGAGCTGTCACTCCTCCCCAACGTTTTGCCGGAGAATAGGAAAGGAGTAGGCTTGGTCTGCGTGCAGAGGCAGAATTGCACCGTACTACGTCTGGGAATATTCGTGCACGGTGGAGAACGCGCCTCACAGCTCCTCTGCTTTGAATAGTGGTGGAGCCTCGCTTAACAAATCCAACGAGTTTCAATTCAACAGTAGCCTAACCGAATGCTATTCATGGATAATCTTCTCCGgcaAGGACGAGCTACTGAATAACCACAGCCTGAGTCAACAGGGTATCAAGTTACCATCCTAGGGTGTCTGTGTGATGCCCCCTGCTAGCGGGTCCCCTCCCAGTGTGTGATGCATCATGGCTCCGGTGCTGAGTGGCTTGTGGGAACTGGGGGTCGTGGGGTCAGGGGACGCCACGGCGACATCCTTAGGCAATGTGCAGCTGATGACCATCTCTGTCTTCTTGCTGCTCTCAATGCTACTGCTGCTGTGTGCAGGCTGCCAGGGGCCAAAGAAATCAAATTGCCGCCCAGTGGCCCACGAGAACCTCATGAATGGAgtgtctgagagagagacatttacCGGTAGTCAGTCTGTGGACAGCCCAGGGACTGACCTATTGGTGAGCAGCTCACACAACGGCCCACTAACCAGTggtacagTGTTGACAGACACCCAGGACAGCAGTCCCCAGCCCTCTGAGGAGATGCTGTCCAGTCAGTCTGAGCTGCGGAGCTCCAAGTGTCCCCAGGACCGCGAGCTGCCCAGCATCCCACCCAACAGCACCCTGGAGGGGATGGGATCTTCCAGCggaccccttctccctccctctggagACGGCACCTACGAGgtggtgaaggagagaggcGGCGACTTGACGGCGTCCCGTGACGTGAGCGTTGAAGACTCCCTGTACGAGACGGTCAAAGAGCTGAAGGACCATCCAGGGAGCCTGGCTGCAGGTCTCCTCAACGGAGACGGTACTATGTCCCCCCTCAGCCCTGATGACAATGAAAtttcccaccaccaccaccaccacaaccacctcCCACCTCCCAACAACCCTCCAGCCCTCCACAACGGCCACCTCAGCCCTGGCTCCCCAGAGCGGGGGCCCCTGTGCGCGGGAGTGGAGTACGCCTCGGTGGATCTCAACAAGAAGAGCCGTTACAGTGCAGACCTGGAGGCCAGGCGCTCAGCCACCATCACTGCTGCTGTGAGCCCCACAGAGGAGCCCGAGGAGGAGGACAGACCCCCGCCTGTACCTGACAAGGTGCTGGATGAGAACGACAACCAGCCTACCATGATGGAcgcaggagcggtggtggtacTGGGGGCCGCGCTGCAAAACGGAGAGctgtcaGACATGTACTCCACGGTGGGGAAGCCAGGTCTAgatgtggaggagaaggagagtgactACAGCAGCATTGCTGATATCAAGGGTCTGGTCCCCGAGTATTCCTCCAGTGATCTCTACGCTACCGTCAGGGACATCCACCCCCAGCCCAGAGAGGGGGAGTCAGACCCCCAGGGACCCCCCACAGAGAGCATCGAGCCTGGCTACGAGATCATCCACATCCCTAAGACTGGCAGTGGAGAGGACTTGGGGCTGGGGAACCAGGTTCAGGAGCCAGACTATGAGAGTGTAGGTGAGCTGGCCCTGGGGTTGAACAGGGAGAGCTCCCGTCTCTGACTGCCTATGGACCCTAAAGCCTGAGTTTCTGGGGCCTCACCCTCCACCCCAGCCATTAACCTCACTCCTAGCCTCACCCTCAACCCCAGCCATTAACCTCACTCCTAGCCTCACCCTCAACCCCAGCCATTAACCTCACTCCTAGCCTCACCCTCAACCCCAGCCATTAACCTCACTCCTAGCCTCACCCTCCACCCCAGCCATTAATCTCACTCCTAGCCTCACCCTCCACCCAAGCCATTAACCTCACTCCTAGCCTCACCCTCAACCCCAGCCATTAACCTCACTCCTAGCCTCACCCTCAACCCCAGCCATTAACCTCACTCCTAGCCTCACCCTCA
>XM_036971460.1
ATGAGAGCTGTCACTCCTCCCCAACGTTTTGCCGGAGAATAGGAAAGGAGTAGGCTTGGTCTGCGTGCAGAGGCAGAATTGCACCGTACTACGTCTGGGAATATTCGTGCACGGTGGAGAACGCGCCTCACAGCTCCTCTGCTTTGAATAGTGGTGGAGCCTCGCTTAACAAATCCAACGAGTTTCAATTCAACAGTAGCCTAACCGAATGCTATTCATGGATAATCTTCTCCGTTACCATCCTAGGGTGTCTGTGTGATGCCCCCTGCTAGCGGGTCCCCTCCCAGTGTGTGATGCATCATGGCTCCGGTGCTGAGTGGCTTGTGGGAACTGGGGGTCGTGGGGTCAGGGGACGCCACGGCGACATCCTTAGGCAATGTGCAGCTGATGACCATCTCTGTCTTCTTGCTGCTCTCAATGCTACTGCTGCTGTGTGCAGGCTGCCAGGGGCCAAAGAAATCAAATTGCCGCCCAGTGGCCCACGAGAACCTCATGAATGGAgtgtctgagagagagacatttacCGGTAGTCAGTCTGTGGACAGCCCAGGGACTGACCTATTGGTGAGCAGCTCACACAACGGCCCACTAACCAGTggtacagTGTTGACAGACACCCAGGACAGCAGTCCCCAGCCCTCTGAGGAGATGCTGTCCAGTCAGTCTGAGCTGCGGAGCTCCAAGTGTCCCCAGGACCGCGAGCTGCCCAGCATCCCACCCAACAGCACCCTGGAGGGGATGGGATCTTCCAGCggaccccttctccctccctctggagACGGCACCTACGAGgtggtgaaggagagaggcGGCGACTTGACGGCGTCCCGTGACGTGAGCGTTGAAGACTCCCTGTACGAGACGGTCAAAGAGCTGAAGGACCATCCAGGGAGCCTGGCTGCAGGTCTCCTCAACGGAGACGGTACTATGTCCCCCCTCAGCCCTGATGACAATGAAAtttcccaccaccaccaccaccacaaccacctcCCACCTCCCAACAACCCTCCAGCCCTCCACAACGGCCACCTCAGCCCTGGCTCCCCAGAGCGGGGGCCCCTGTGCGCGGGAGTGGAGTACGCCTCGGTGGATCTCAACAAGAAGAGCCGTTACAGTGCAGACCTGGAGGCCAGGCGCTCAGCCACCATCACTGCTGCTGTGAGCCCCACAGAGGAGCCCGAGGAGGAGGACAGACCCCCGCCTGTACCTGACAAGGTGCTGGATGAGAACGACAACCAGCCTACCATGATGGAcgcaggagcggtggtggtacTGGGGGCCGCGCTGCAAAACGGAGAGctgtcaGACATGTACTCCACGGTGGGGAAGCCAGGTCTAgatgtggaggagaaggagagtgactACAGCAGCATTGCTGATATCAAGGGTCTGGTCCCCGAGTATTCCTCCAGTGATCTCTACGCTACCGTCAGGGACATCCACCCCCAGCCCAGAGAGGGGGAGTCAGACCCCCAGGGACCCCCCACAGAGAGCATCGAGCCTGGCTACGAGATCATCCACATCCCTAAGACTGGCAGTGGAGAGGACTTGGGGCTGGGGAACCAGGTTCAGGAGCCAGACTATGAGAGTGTAGGTGAGCTGGCCCTGGGGTTGAACAGGGAGAGCTCCCGTCTCTGACTGCCTATGGACCCTAAAGCCTGAGTTTCTGGGGCCTCACCCTCCACCCCAGCCATTAACCTCACTCCTAGCCTCACCCTCAACCCCAGCCATTAACCTCACTCCTAGCCTCACCCTCAACCCCAGCCATTAACCTCACTCCTAGCCTCACCCTCAACCCCAGCCATTAACCTCACTCCTAGCCTCACCCTCCACCCCAGCCATTAATCTCACTCCTAGCCTCACCCTCCACCCAAGCCATTAACCTCACTCCTAGCCTCACCCTCAACCCCAGCCATTAACCTCACTCCTAGCCTCACCCTCAACCCCAGCCATTAACCTCACTCCTAGCCTCACCCTCA
>XM_036971462.1
ATGAGAGCTGTCACTCCTCCCCAACGTTTTGCCGGAGAATAGGAAAGGAGTAGGCTTGGTCTGCGTGCAGAGGCAGAATTGCACCGTACTACGTCTGGGAATATTCGTGCACGGTGGAGAACGCGCCTCACAGCTCCTCTGCTTTGAATAGTAGGTTTGTATAAGGGTTTACTAATACTTATCAGTTTTATGTTAATCATTTAATAAATGCGGTTTTTTTTTAGGTGGTGGAGCCTCGCTTAACAAATCCAACGAGTTTCAATTCAACAGTAGCCTAACCGAATGCTATTCATGGATAATCTTCTCCGTTACCATCCTAGGGTGTCTGTGTGATGCCCCCTGCTAGCGGGTCCCCTCCCAGTGTGTGATGCATCATGGCTCCGGTGCTGAGTGGCTTGTGGGAACTGGGGGTCGTGGGGTCAGGGGACGCCACGGCGACATCCTTAGGCAATGTGCAGCTGATGACCATCTCTGTCTTCTTGCTGCTCTCAATGCTACTGCTGCTGTGTGCAGGCTGCCAGGGGCCAAAGAAATCAAATTGCCGCCCAGTGGCCCACGAGAACCTCATGAATGGAgtgtctgagagagagacatttacCGGTAGTCAGTCTGTGGACAGCCCAGGGACTGACCTATTGGTGAGCAGCTCACACAACGGCCCACTAACCAGTggtacagTGTTGACAGACACCCAGGACAGCAGTCCCCAGCCCTCTGAGGAGATGCTGTCCAGTCAGTCTGAGCTGCGGAGCTCCAAGTGTCCCCAGGACCGCGAGCTGCCCAGCATCCCACCCAACAGCACCCTGGAGGGGATGGGATCTTCCAGCggaccccttctccctccctctggagACGGCACCTACGAGgtggtgaaggagagaggcGGCGACTTGACGGCGTCCCGTGACGTGAGCGTTGAAGACTCCCTGTACGAGACGGTCAAAGAGCTGAAGGACCATCCAGGGAGCCTGGCTGCAGGTCTCCTCAACGGAGACGGTACTATGTCCCCCCTCAGCCCTGATGACAATGAAAtttcccaccaccaccaccaccacaaccacctcCCACCTCCCAACAACCCTCCAGCCCTCCACAACGGCCACCTCAGCCCTGGCTCCCCAGAGCGGGGGCCCCTGTGCGCGGGAGTGGAGTACGCCTCGGTGGATCTCAACAAGAAGAGCCGTTACAGTGCAGACCTGGAGGCCAGGCGCTCAGCCACCATCACTGCTGCTGTGAGCCCCACAGAGGAGCCCGAGGAGGAGGACAGACCCCCGCCTGTACCTGACAAGGTGCTGGATGAGAACGACAACCAGCCTACCATGATGGAcgcaggagcggtggtggtacTGGGGGCCGCGCTGCAAAACGGAGAGctgtcaGACATGTACTCCACGGTGGGGAAGCCAGGTCTAgatgtggaggagaaggagagtgactACAGCAGCATTGCTGATATCAAGGGTCTGGTCCCCGAGTATTCCTCCAGTGATCTCTACGCTACCGTCAGGGACATCCACCCCCAGCCCAGAGAGGGGGAGTCAGACCCCCAGGGACCCCCCACAGAGAGCATCGAGCCTGGCTACGAGATCATCCACATCCCTAAGACTGGCAGTGGAGAGGACTTGGGGCTGGGGAACCAGGTTCAGGAGCCAGACTATGAGAGTGTAGGTGAGCTGGCCCTGGGGTTGAACAGGGAGAGCTCCCGTCTCTGACTGCCTATGGACCCTAAAGCCTGAGTTTCTGGGGCCTCACCCTCCACCCCAGCCATTAACCTCACTCCTAGCCTCACCCTCAACCCCAGCCATTAACCTCACTCCTAGCCTCACCCTCAACCCCAGCCATTAACCTCACTCCTAGCCTCACCCTCAACCCCAGCCATTAACCTCACTCCTAGCCTCACCCTCCACCCCAGCCATTAATCTCACTCCTAGCCTCACCCTCCACCCAAGCCATTAACCTCACTCCTAGCCTCACCCTCAACCCCAGCCATTAACCTCACTCCTAGCCTCACCCTCAACCCCAGCCATTAACCTCACTCCTAGCCTCACCCTCA

Function

NR:

description
PREDICTED: phosphoprotein associated with glycosphingolipid-enriched microdomains 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036971459.1 False 2029 mRNA 0.58 9 11553349 11656524
XM_036971460.1 False 1979 mRNA 0.59 8 11553349 11656524
XM_036971462.1 True 2053 mRNA 0.57 7 11553349 11656524

Neighbor

gene id symbol gene type direction distance location
LOC118946500 LOC106570575 coding upstream 288483 11262547 ~ 11278404 (+)
LOC110487935 LOC106570554 coding upstream 318881 11193050 ~ 11234468 (+)
il6 il-6 coding upstream 548913 11002048 ~ 11004436 (+)
LOC110489377 LOC106588728 coding upstream 743950 10759051 ~ 10809399 (+)
polr1f twistnb coding upstream 877749 10670248 ~ 10675600 (+)
LOC110487927 LOC106588816 coding downstream 7476 11664000 ~ 11742813 (+)
LOC110487931 LOC106570561 coding downstream 158583 11815107 ~ 11841142 (+)
LOC110487932 LOC106570557 coding downstream 249681 11906205 ~ 11910366 (+)
LOC110487934 LOC106570559 coding downstream 275034 11931558 ~ 11959079 (+)
LOC110489380 LOC106570560 coding downstream 326767 11983291 ~ 12112461 (+)
G2296282 mrpl53 non-coding upstream 4729 11545314 ~ 11548620 (+)
G2296259 NA non-coding upstream 9655 11542011 ~ 11543694 (+)
G2296256 NA non-coding upstream 52536 11500566 ~ 11500813 (+)
G2296253 NA non-coding upstream 59832 11493248 ~ 11493517 (+)
G2296249 NA non-coding upstream 72566 11480480 ~ 11480783 (+)
G2296334 NA non-coding downstream 87061 11743585 ~ 11747039 (+)
G2296335 NA non-coding downstream 103152 11759676 ~ 11761155 (+)
G2296374 NA non-coding downstream 106387 11762911 ~ 11763220 (+)
G2296376 NA non-coding downstream 108733 11765257 ~ 11767609 (+)
G2296150 LOC106570575 other upstream 263046 11285493 ~ 11290303 (+)
LOC110487904 snrpd1 other upstream 1032042 10509464 ~ 10521398 (+)
LOC118946540 NA other upstream 1229761 10318805 ~ 10323588 (+)
G2294925 NA other upstream 1421698 10130116 ~ 10131651 (+)
G2294452 LOC106570648 other upstream 2215594 9335335 ~ 9337755 (+)
G2296450 NA other downstream 258672 11915196 ~ 11977297 (+)
G2298390 NA other downstream 1973538 13630062 ~ 13630795 (+)
G2298739 NA other downstream 2096743 13753267 ~ 13753517 (+)
G2298884 NA other downstream 2357708 14014232 ~ 14015587 (+)

Expression


Co-expression Network