LOC110487927 (LOC106588816)


Basic Information

Item Value
gene id LOC110487927
gene name LOC106588816
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 11664000 ~ 11742813 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021559844.2
ATCTGGATCCGGAGTCACTTTACGCGGCTATTTCAGCAAATTTCATCCTGTCAGACGGAAAACCAGTGTacaatatgtgtgaaatttgaaTTATATTTCGGGTAGACCAACATTTATCGCTTTGTTTGTATATTGGCAAAGCCATTTTGTTGggtttaaagattgctgtacaaaTGTCATTGTCGGTCCGAGAATGTTTGGCTGTTCCGTCTTTTTGTGCTTTCTCGTGAGTTTAGCGGGGACAGTCAGGAAAACAAACAGATCGAACGAAGAAAGATCGAAAGCCGGTCGGTTGAAGAGGTTATTTTGGCGGGGAATGATTCGCTTTCATGCATTCCTTAATCGGTGCTTGTTGCTTTTCCTACACATATTCGTGCTTTCGAATATCATTCGTTTTGAACCGTGGTAGCAGCAGAGTATAGTCTATCCGCTTCGGTGTTGTGTTTTAATGTCCGTGTTTACAGTATCAATTTTAGCTAATTCGACGTCCATCGATAGATATTTACCGCTTCTAATTCGGTGTTAAACATTTACCGCTATGCATACGAGGCGTTTGGTAAAGCGTTCGATCCTGGGGAGCCGGGTGTTTACGCCGAGTCCGACAGGGGACGGGGCTCCGTTGTCAGGACTGGTTCAGGCTGTCAAGCAGCAGGAAAACAGAGACGTTTCAACCGGACCCCGGCGTAATGTCTACATGGTGTTAATGCAAGACGGAAGTCTGAAAGAATTCTCAGAGGACGAGATAGCGGTGGGCTTCAACCAAACGACTGCGAAAGGACCGCTCAGATCGAGCTTGAAGcagagcgtCTGGAACGGCCGGGGGAACGGGGCTCCTCTGCAGAGCCAGACCATGGAGGCCCAGAAGGGGGAGGCCAACTCCCTGAGCCCAGAGGCGTTGAAGGGGGAGCGGGGAGCAGACGGTAGGAGGACGGGGCGCCCCCTTGAGGGTCCAGAGAGGGACCACACCCGCTCTGTCTCCCTGCTGGAGCAGAAACGCAACGTAGTGTCATCCAGCATCGATGTGCCCAACGTCAGGAagtcagaggaggaagtggacatGGAGAAGGTGACAGCTGCCATGGTTCTGACCAGTCTGTCCAGCAGTCCGCTGGTCAGGAGTCCTCCCGTCAAAGTCAGTGaGTGTCTGAATGGTTCGTGGAAGGACAGAGGTGGGGGCTTCACCCCCTCCAGTTACAGCAGCAGTGGCTATTGGAGCTGGAGCGGCCCTAGTGACCAGTCCAACCCGTCCACCCCCTCCCCGCCGCTCTCCGCAGACAGCTTCAAGCCTTTCCGTATGCCCAGCATCAACGGCCCGCCCCCCGACGACGCCATCGACGAACAGGACGGCAGCAGCCTGCTCTTTGACGAGCCAATCCCACGCAAGCGCAAGAACTCCATGAAGGTGATGTTCAAGTGTCTGTGGAAGAACTGTGGGAAGGTTCTGAGCTCGGCTGCTGGGATACAGAGACACATCCGGACCGTTCACCtggggcGTAACTGTGACTCTGACTGCAGTGATGGAGAGGAGGATTTCTACTACTCAGAGATCAAACTCAACACAGACTCAGTGGCTGACGGTCTGAGCAGCCtgtcccctgtctccccctctgtgcTGTCCCCCGTCCCTCCCTCCAATGACCGCCACAGACGACCTCCCGCAGAGGGCAGCAACGGGTCCAGTGGGAACAAGGAGAACCACAGCCACGCCCACTCTAACACCACGCCCCTCAGTCGCTCCGCCCCCAGCGCCCTCTACCTCATCCACACTGACCACGCCTACCAGGCCACATCTCCAGTTACCATCCCCTCCACTGGGTCAGGCTCTGCTGCCTCCACCTCCTTCACCCCCAGCAGCAGCTCCAATTTCAGCATCTCCTGGCAGTCACCTCCTGTCACCTTCACTGGCACCGCTGTCTCTCCCACTCACAGTCGGACTCAGAGCTTTGTAGAGCAGCGGCCCCAGACCATAgcagtcctctcctcccctcccagagCCACTGGCTCACTCAGCCGTAAGTCCCGTGGCGAGGGTAAGAAGTGTCGCAAAGTGTACGGGATGGAGAACAGGGACATGTGGTGCACTGCCTGCCGATGGAAGAAAGCCTGCCAGAGATTTACTGACTGATTTACTGACTGATTTACTGACTGAACCAACCAAGTAACCAACCGACCAACCGCTGAGGCTGCAGGCCCTTCGCCATGGAAATCAGGGGTGTTTCTTTCTGTTCCCTTCCTAATGTGTTATGTGTTAACGTCACTCCAAAACCAATGATCGGTCTACTCCATTCCAACccgacccctccctaacccgacTGTCTATCAGAACCAACCGGATGGAGCCTACAGCTGTCCTGAGTAAATCCCAAGTTAACTCTAGCTCCCTCCCACTTCCAACCTCGGAAGCAACAACCAACACGCAGCTCCAGCTCTAAAGATGACGACGACATCAAAATAACTCTGCTTTTTATATGTTGAGTTTGTTGTCTCTCTTCTTTCTATGTTTTGAAAAACAGGAACATTCGTCAGGTTAGAAGGGACCAGAAAACAGGCTTCCTTTGTCCATAAAATTCTTATTTTTTTTCAGAGAAGACTGGCCATTTTGTTTTATCTTTGGGAGAATCAAAAGAGAGGCGGGGAAAGATCCTTCTTTCCTCAgtccctttctctctgttctaTCCTGTACAGTCTGgatctctactccctctctcctccgttGTCACCCCAGGGAATGGATCTCGTGTCTGGACTCGGGAGGGGTCGATAGCACCCCCTGGTGGGGGAAAATGGATCAATTCCAAAACAAATATAAATACCCAGTATTTAAATCCCCAGGGTGCTGAACAGACTAACATTGCCAGCAGCAACAAGCCCCACACCACAACGCCGTAAACAATtcaacacacagcaacacaggacaacacagttTTCTATCTTAAATGTAatgtatatctatctatctatctatccctccatctatcctatctatcagatatgtctatctgtctgtctctgtctgtctctgtccctgtccctctgtctgtctatctctccagTTTACTGAAGCTATTAAGGGACATTTTCTTTCAGGGATTGTCGATCAACAGAAAGCCAGCAGCTCACATTTAAATATAGTTATTTACAATGAGGGTTTTGGTCACATGATATCTACTTGCAACcaaaaggtttgttttgttggtGGGTTTTTTTATATGCCATTTTCTTTAATGTTGTTGTTTCTCGATATCTATTCTTCTTGGTGTTTTGAAACTCCAATGTTACAGCTCTCCGACCCGCTTTGGGCTGAAACAACCAAGCAGCCGACGGCTAGTCCAGCCGTAAAGCGGGGACACCCTCCTCCACACCCCATCTTCCATCAGGAATTTTAATTAATGTTTTGTTTATGGGCGCTATACTTTACCAAAGCCCCAAGATGGAGGGTCTGCTCAATACCAAAATTGAGTGAGGTGAATGAGCACTTGTAAAGGCAGTCTCAGTGGACGATCTTGTGTTGAGGTGGggttaacatctctctctctcacgctacTCTGTCCTGTGTTGACCTTCCAGGTTGATGGGAGAAATGATGGTAAAGTAGTGGTAGTAACACCATGCTGTGGCCGGGCCAGCCTAGACCTGCCCACTAGGCCCTGGGCTGTTACACCTAGAGGTGGGAAAAGGCTGAGGGAATATATATAtctccaatatctctctctctctctctctctctctctctctctctctctctctctctctctctct

Function

NR:

description
zinc finger protein 704-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021559844.2 True 3759 mRNA 0.51 9 11664000 11742813

Neighbor

gene id symbol gene type direction distance location
LOC110487925 LOC106570566 coding upstream 7476 11553349 ~ 11656524 (+)
LOC118946500 LOC106570575 coding upstream 399134 11262547 ~ 11278404 (+)
LOC110487935 LOC106570554 coding upstream 429532 11193050 ~ 11234468 (+)
il6 il-6 coding upstream 659564 11002048 ~ 11004436 (+)
LOC110489377 LOC106588728 coding upstream 854601 10759051 ~ 10809399 (+)
LOC110487931 LOC106570561 coding downstream 72294 11815107 ~ 11841142 (+)
LOC110487932 LOC106570557 coding downstream 163392 11906205 ~ 11910366 (+)
LOC110487934 LOC106570559 coding downstream 188745 11931558 ~ 11959079 (+)
LOC110489380 LOC106570560 coding downstream 240478 11983291 ~ 12112461 (+)
LOC110487924 LOC106570549 coding downstream 403865 12146678 ~ 12153737 (+)
G2296321 NA non-coding upstream 29580 11633948 ~ 11634420 (+)
G2296304 NA non-coding upstream 68632 11594703 ~ 11595368 (+)
G2296302 NA non-coding upstream 69681 11593523 ~ 11594319 (+)
G2296297 NA non-coding upstream 75787 11586775 ~ 11588213 (+)
G2296282 mrpl53 non-coding upstream 115380 11545314 ~ 11548620 (+)
G2296334 NA non-coding downstream 772 11743585 ~ 11747039 (+)
G2296335 NA non-coding downstream 16863 11759676 ~ 11761155 (+)
G2296374 NA non-coding downstream 20098 11762911 ~ 11763220 (+)
G2296376 NA non-coding downstream 22444 11765257 ~ 11767609 (+)
G2296278 NA other upstream 99410 11563547 ~ 11564590 (+)
G2296150 LOC106570575 other upstream 373697 11285493 ~ 11290303 (+)
LOC110487904 snrpd1 other upstream 1142693 10509464 ~ 10521398 (+)
LOC118946540 NA other upstream 1340412 10318805 ~ 10323588 (+)
G2294925 NA other upstream 1532349 10130116 ~ 10131651 (+)
G2296450 NA other downstream 172383 11915196 ~ 11977297 (+)
G2298390 NA other downstream 1887249 13630062 ~ 13630795 (+)
G2298739 NA other downstream 2010454 13753267 ~ 13753517 (+)
G2298884 NA other downstream 2271419 14014232 ~ 14015587 (+)

Expression


Co-expression Network